Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007079

Physical Location & Seq

Genomic Coordinates Reverse (-)

23170380 .. 23177168

Gene Structure 6789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG228600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAGGAGAAGCCGTCGTCGAAGAGAGTCAAGTCAGAGGACGACCACGTGGCGAAGGAGGTGAAGACGGAGGAGGACCATTACGGTAGCAAAAGCTTGGATACTGCGAAAGCCGATAAGCTGGTGTGGCTGATGAAGCTACCGCAGACGGTGGCCAAGTCTTGGAACTCGCACCCTTCCTCCGATCCTCACCCCTTCGCCAAAGTAGCCCTCTCCCTTGATCCGCTCGAAACCGATAAGACCTCCTCTGTGCAGCAAAACACTAATTTGCATTGCAATTTGATCTGTCGAAGCAAATCAAGGCAAGATTGCCGTGGAAGGGAAAGGTCTGTACAAAGTTATATGAAGCAGGGTTTAGTATATGATAGTTTGATAGGAGAGAGAATTTTAGAATATGTATATGTAACTGAATGTTTAAAGCTTAGAGGCAATCTTAGACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

147

Amino Acids

16.79

Weight (kDa)

8.63

Isoelectric Point (pI)

56.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52270
rosa_chinensis	RchiOBHm_Chr1g0318621 RchiOBHm_Chr2g0111291 RchiOBHm_Chr6g0302021
rosa_laevigata	RLG00000011202 RLG00000017882
rosa_multiflora	Rmu_co8206050.1_g000001 Rmu_sc0005033.1_g000009 Rmu_sc0040640.1_g000001 Rmu_sc0040770.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166180
rosa_rugosa	Rorug05G0494200 Rorug05G0591000.1 Rorug06G0311100
rosa_samantha	Rh1AG035400 Rh1DG171200 Rh2CG228600 Rh2DG233100 Rh6AG423800 Rh6BG478500 Rh6CG436800 Rh6DG423900
rosa_wichuraiana	Rw2G009110 Rw2G017410 Rw6G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	162
AccBSI	CCGCTC	1 cut(s)	226
AciI	CCGC	2 cut(s)	143, 224
AclWI	GGATC	2 cut(s)	179, 215
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	384
AcvI	CACGTG	1 cut(s)	49
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	2 cut(s)	162, 319
AluBI	AGCT	4 cut(s)	96, 121, 139, 421
AluI	AGCT	4 cut(s)	96, 121, 139, 421
AlwI	GGATC	2 cut(s)	179, 215
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	73, 182
AvaII	GGWCC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	155
BbrPI	CACGTG	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	265
BceAI	ACGGC	1 cut(s)	297
BciVI	GTATCC	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	94
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	313
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 164, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 319
Bse3DI	GCAATG	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	313
BseLI	CCNNNNNNNGG	2 cut(s)	162, 319
BseMI	GCAATG	1 cut(s)	271
BseRI	GAGGAG	3 cut(s)	20, 86, 235
BseXI	GCAGC	1 cut(s)	265
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	162, 319
BsnI	GGCC	1 cut(s)	155
Bsp1407I	TGTACA	1 cut(s)	331
Bsp143I	GATC	3 cut(s)	184, 220, 282
BspACI	CCGC	2 cut(s)	143, 224
BspANI	GGCC	1 cut(s)	155
BspPI	GGATC	2 cut(s)	179, 215
BsrBI	CCGCTC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	271
BsrGI	TGTACA	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	3 cut(s)	184, 220, 282
Bst4CI	ACNGT	2 cut(s)	86, 151
Bst6I	CTCTTC	1 cut(s)	17
BstAUI	TGTACA	1 cut(s)	331
BstBAI	YACGTR	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	422, 434
BstDSI	CCRYGG	1 cut(s)	313
BstKTI	GATC	3 cut(s)	187, 223, 285
BstMBI	GATC	3 cut(s)	184, 220, 282
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 136, 206
BstV1I	GCAGC	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	332
CviJI	RGCY	9 cut(s)	13, 96, 113, 121, 130, 139, 155, 209, 421
CviKI_1	RGCY	9 cut(s)	13, 96, 113, 121, 130, 139, 155, 209, 421
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	2 cut(s)	422, 434
DpnI	GATC	3 cut(s)	186, 222, 284
DpnII	GATC	3 cut(s)	184, 220, 282
DraI	TTTAAA	1 cut(s)	417
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	76
Eco72I	CACGTG	1 cut(s)	49
FaiI	YATR	8 cut(s)	342, 344, 361, 363, 396, 400, 402, 442
Fnu4HI	GCNGC	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	254
GluI	GCNGC	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	155
HindIII	AAGCTT	2 cut(s)	94, 419
HinfI	GANTC	1 cut(s)	27
HphI	GGTGA	2 cut(s)	73, 182
Hpy188I	TCNGA	2 cut(s)	37, 184
Hpy99I	CGWCG	2 cut(s)	19, 22
HpyAV	CCTTC	4 cut(s)	49, 186, 205, 312
HpyCH4III	ACNGT	2 cut(s)	86, 151
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	253, 271, 276
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 136, 206
HpyF3I	CTNAG	2 cut(s)	422, 434
HpySE526I	ACGT	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	184, 220, 282
LpnPI	CCDG	2 cut(s)	107, 335
Lsp1109I	GCAGC	1 cut(s)	265
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	3 cut(s)	186, 222, 284
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	3 cut(s)	184, 220, 282
MboII	GAAGA	2 cut(s)	34, 76
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	3 cut(s)	265, 277, 384
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	36
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	155
MwoI	GCNNNNNNNGC	3 cut(s)	127, 136, 206
NdeII	GATC	3 cut(s)	184, 220, 282
PflMI	CCANNNNNTGG	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	255
PleI	GAGTC	1 cut(s)	35
PmaCI	CACGTG	1 cut(s)	49
PmlI	CACGTG	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	49
PspCI	CACGTG	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	3 cut(s)	184, 220, 282
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	36
SetI	ASST	8 cut(s)	51, 63, 98, 123, 141, 245, 329, 423
SinI	GGWCC	1 cut(s)	76
Sse9I	AATT	3 cut(s)	265, 277, 384
SsiI	CCGC	2 cut(s)	143, 224
TaaI	ACNGT	2 cut(s)	86, 151
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	3 cut(s)	20, 228, 289
TasI	AATT	3 cut(s)	265, 277, 384
TatI	WGTACW	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TseI	GCWGC	1 cut(s)	253
TspDTI	ATGAA	2 cut(s)	149, 359
TspGWI	ACGGA	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.