Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007079

Physical Location & Seq

Genomic Coordinates Reverse (-)

21493173 .. 21499760

Gene Structure 6588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G017410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGGAGAAGCCGTCGTTGAAGAGAGTCAAGTCAGAGGACGACCACGTGACGAAGGAGGTGAAGACGGAGGAGGACCATTACGGTAGCAAACGCTTGGATACTGCGAAAGCCGATAAGCTGGTGTGGCTGATGAAGCTACCGCAGACGGTGGCCAAGTCTTGGAACTTGCACCCTTCCTCCGATCCTCACCCCTTCGCCAAAGTATCCCTCTCCCTCGATCCGCTCGAAAGCGATAAGACCTCCTCTGTGCAGTTCAAAATGGAGGTTGCTACGACTGAGGCTAGGATGAAGCCGAAGAGTTATTCTATGAACACGTCAAAAGACTTTATTCCCATGTATTGTCGTGGAAGGGAAAGTAGAGCACAGTTTGACATGAAGCCCCATGGTACAAACTTTGAGGAACCAAAAGAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

139

Amino Acids

16.02

Weight (kDa)

7.83

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52270
rosa_chinensis	RchiOBHm_Chr1g0318621 RchiOBHm_Chr2g0111291 RchiOBHm_Chr6g0302021
rosa_laevigata	RLG00000011202 RLG00000017882
rosa_multiflora	Rmu_co8206050.1_g000001 Rmu_sc0005033.1_g000009 Rmu_sc0040640.1_g000001 Rmu_sc0040770.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166180
rosa_rugosa	Rorug05G0494200 Rorug05G0591000.1 Rorug06G0311100
rosa_samantha	Rh1AG035400 Rh1DG171200 Rh2CG228600 Rh2DG233100 Rh6AG423800 Rh6BG478500 Rh6CG436800 Rh6DG423900
rosa_wichuraiana	Rw2G009110 Rw2G017410 Rw6G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	162
AccBSI	CCGCTC	1 cut(s)	226
AciI	CCGC	2 cut(s)	143, 224
AclWI	GGATC	2 cut(s)	179, 215
AcoI	YGGCCR	1 cut(s)	153
AcvI	CACGTG	1 cut(s)	49
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	2 cut(s)	22, 259
AjiI	CACGTC	1 cut(s)	318
AluBI	AGCT	2 cut(s)	121, 139
AluI	AGCT	2 cut(s)	121, 139
Alw21I	GWGCWC	1 cut(s)	367
AlwI	GGATC	2 cut(s)	179, 215
AoxI	GGCC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	73, 182
AvaII	GGWCC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	155
BbrPI	CACGTG	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	367
BciVI	GTATCC	2 cut(s)	94, 217
BfaI	CTAG	1 cut(s)	285
BfuI	GTATCC	2 cut(s)	94, 217
Bme18I	GGWCC	1 cut(s)	76
BmgBI	CACGTC	1 cut(s)	318
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	405
BpiI	GAAGAC	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	385
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 164, 194
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	385
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	3 cut(s)	20, 86, 235
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	162
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	184, 220
Bsp19I	CCATGG	1 cut(s)	385
BspACI	CCGC	2 cut(s)	143, 224
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	405
BspPI	GGATC	2 cut(s)	179, 215
BsrBI	CCGCTC	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	2 cut(s)	184, 220
BssT1I	CCWWGG	1 cut(s)	385
Bst4CI	ACNGT	3 cut(s)	86, 151, 369
Bst6I	CTCTTC	2 cut(s)	17, 293
BstBAI	YACGTR	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	1 cut(s)	294
BstKTI	GATC	2 cut(s)	187, 223
BstMBI	GATC	2 cut(s)	184, 220
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 136
BstV2I	GAAGAC	1 cut(s)	71
BsuI	GTATCC	2 cut(s)	94, 217
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	385
BtrI	CACGTC	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	3 cut(s)	337, 376, 386
CviJI	RGCY	9 cut(s)	13, 113, 121, 130, 139, 155, 284, 295, 382
CviKI_1	RGCY	9 cut(s)	13, 113, 121, 130, 139, 155, 284, 295, 382
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	2 cut(s)	186, 222
DpnII	GATC	2 cut(s)	184, 220
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	17, 293
EarI	CTCTTC	2 cut(s)	17, 293
Eco130I	CCWWGG	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	76
Eco72I	CACGTG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	3 cut(s)	340, 379, 389
FaiI	YATR	4 cut(s)	311, 338, 377, 387
FatI	CATG	3 cut(s)	336, 375, 385
FokI	GGATG	1 cut(s)	301
FspBI	CTAG	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	155
Hin1II	CATG	3 cut(s)	340, 379, 389
HinfI	GANTC	1 cut(s)	27
HphI	GGTGA	2 cut(s)	73, 182
Hpy188I	TCNGA	2 cut(s)	37, 184
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	4 cut(s)	49, 186, 205, 345
HpyCH4III	ACNGT	3 cut(s)	86, 151, 369
HpyCH4IV	ACGT	2 cut(s)	48, 317
HpyCH4V	TGCA	2 cut(s)	172, 253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 136
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	2 cut(s)	48, 317
Hsp92II	CATG	3 cut(s)	340, 379, 389
Kzo9I	GATC	2 cut(s)	184, 220
LpnPI	CCDG	1 cut(s)	107
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	2 cut(s)	48, 317
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	186, 222
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	2 cut(s)	184, 220
MboII	GAAGA	3 cut(s)	34, 76, 310
MhlI	GDGCHC	1 cut(s)	367
MlsI	TGGCCA	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	36
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	127, 136
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	2 cut(s)	184, 220
NlaIII	CATG	3 cut(s)	340, 379, 389
NlaIV	GGNNCC	1 cut(s)	405
NmuCI	GTSAC	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PflMI	CCANNNNNTGG	1 cut(s)	162
PleI	GAGTC	1 cut(s)	35
PmaCI	CACGTG	1 cut(s)	49
PmlI	CACGTG	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	49
PspCI	CACGTG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
Sau3AI	GATC	2 cut(s)	184, 220
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	7 cut(s)	51, 63, 123, 141, 245, 270, 320
SinI	GGWCC	1 cut(s)	76
SsiI	CCGC	2 cut(s)	143, 224
SspMI	CTAG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	3 cut(s)	86, 151, 369
TaiI	ACGT	2 cut(s)	51, 320
TaqI	TCGA	2 cut(s)	219, 228
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	4 cut(s)	149, 305, 326, 392
TspGWI	ACGGA	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	76
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.