Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040770.1

Orthogroup ID

OG0007079

Physical Location & Seq

Genomic Coordinates Forward (+)

3032 .. 3759

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040770.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggaggagaagccgtcggcgaggagagtcaagtcggaggaagaccacgtggcgaagaaggtgaagacggaggaggaccatggcggtaccaaaagcttggatactgcgaaagccgataagctggtgtggctgatgaagctgccgcaggcggtggccaagtcttggaactcgcacccttcctccgatcctcaccccgtcgccaaagtcgtcctctcccttgatccactcgaaaccgatgagacctctgcggtgcagttcaaaatggaggttgctcccactgaggctgggatgaagccaaagaattattctatgaacatgtcgaaagactttattcctatgtgcgttttctctgagggaaatcaaggtaaggatcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

125

Amino Acids

13.87

Weight (kDa)

6.08

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52270
rosa_chinensis	RchiOBHm_Chr1g0318621 RchiOBHm_Chr2g0111291 RchiOBHm_Chr6g0302021
rosa_laevigata	RLG00000011202 RLG00000017882
rosa_multiflora	Rmu_co8206050.1_g000001 Rmu_sc0005033.1_g000009 Rmu_sc0040640.1_g000001 Rmu_sc0040770.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166180
rosa_rugosa	Rorug05G0494200 Rorug05G0591000.1 Rorug06G0311100
rosa_samantha	Rh1AG035400 Rh1DG171200 Rh2CG228600 Rh2DG233100 Rh6AG423800 Rh6BG478500 Rh6CG436800 Rh6DG423900
rosa_wichuraiana	Rw2G009110 Rw2G017410 Rw6G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	86
AccB7I	CCANNNNNTGG	1 cut(s)	162
AciI	CCGC	4 cut(s)	84, 143, 149, 248
AclWI	GGATC	2 cut(s)	179, 215
AcoI	YGGCCR	1 cut(s)	153
AcvI	CACGTG	1 cut(s)	49
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	259
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AluBI	AGCT	3 cut(s)	96, 121, 139
AluI	AGCT	3 cut(s)	96, 121, 139
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	2 cut(s)	179, 215
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	139
Asp718I	GGTACC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	73, 182
AvaII	GGWCC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	86
BbrPI	CACGTG	1 cut(s)	49
BbsI	GAAGAC	2 cut(s)	48, 71
BbvI	GCAGC	1 cut(s)	126
BciVI	GTATCC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	94
BisI	GCNGC	2 cut(s)	140, 143
BlsI	GCNGC	2 cut(s)	141, 144
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	88
BpiI	GAAGAC	2 cut(s)	48, 71
BsaAI	YACGTR	1 cut(s)	49
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	79
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 164, 194
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	270, 342
BseRI	GAGGAG	3 cut(s)	20, 37, 86
BseXI	GCAGC	1 cut(s)	126
BseYI	CCCAGC	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	155
Bso31I	GGTCTC	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	184, 220, 370
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	4 cut(s)	84, 143, 149, 248
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	271, 343
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	2 cut(s)	179, 215
BspT107I	GGYRCC	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	3 cut(s)	184, 220, 370
BssT1I	CCWWGG	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	279, 351
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	294
BstKTI	GATC	3 cut(s)	187, 223, 373
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	3 cut(s)	184, 220, 370
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 136
BstNSI	RCATGY	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	126
BstV2I	GAAGAC	2 cut(s)	48, 71
BstXI	CCANNNNNNTGG	1 cut(s)	97
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	2 cut(s)	80, 316
CviJI	RGCY	9 cut(s)	13, 96, 113, 121, 130, 139, 155, 284, 295
CviKI_1	RGCY	9 cut(s)	13, 96, 113, 121, 130, 139, 155, 284, 295
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	2 cut(s)	279, 351
DpnI	GATC	3 cut(s)	186, 222, 372
DpnII	GATC	3 cut(s)	184, 220, 370
EaeI	YGGCCR	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	76
Eco72I	CACGTG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	2 cut(s)	83, 319
FaiI	YATR	4 cut(s)	81, 311, 317, 338
FatI	CATG	2 cut(s)	79, 315
Fnu4HI	GCNGC	2 cut(s)	140, 143
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	140, 143
GluI	GCNGC	2 cut(s)	140, 143
GsaI	CCCAGC	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	83, 319
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	1 cut(s)	27
HphI	GGTGA	2 cut(s)	73, 182
Hpy188I	TCNGA	3 cut(s)	37, 184, 352
Hpy99I	CGWCG	2 cut(s)	19, 200
HpyAV	CCTTC	2 cut(s)	52, 186
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 136
HpyF3I	CTNAG	2 cut(s)	279, 351
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	83, 319
KpnI	GGTACC	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	184, 220, 370
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	3 cut(s)	107, 131, 270
Lsp1109I	GCAGC	1 cut(s)	126
MaeII	ACGT	1 cut(s)	48
MalI	GATC	3 cut(s)	186, 222, 372
MboI	GATC	3 cut(s)	184, 220, 370
MboII	GAAGA	3 cut(s)	53, 67, 76
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	1 cut(s)	301
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	15
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	127, 136
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	3 cut(s)	184, 220, 370
NlaIII	CATG	2 cut(s)	83, 319
NlaIV	GGNNCC	1 cut(s)	88
NspI	RCATGY	1 cut(s)	319
PciI	ACATGT	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PflMI	CCANNNNNTGG	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	141, 144
PleI	GAGTC	1 cut(s)	35
PmaCI	CACGTG	1 cut(s)	49
PmlI	CACGTG	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	49
PscI	ACATGT	1 cut(s)	315
PspCI	CACGTG	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SatI	GCNGC	2 cut(s)	140, 143
Sau3AI	GATC	3 cut(s)	184, 220, 370
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	36
SetI	ASST	8 cut(s)	51, 63, 98, 123, 141, 245, 270, 367
SinI	GGWCC	1 cut(s)	76
Sse9I	AATT	1 cut(s)	301
SsiI	CCGC	4 cut(s)	84, 143, 149, 248
StyI	CCWWGG	1 cut(s)	79
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	2 cut(s)	228, 320
TasI	AATT	1 cut(s)	301
TauI	GCSGC	1 cut(s)	145
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	1 cut(s)	139
TspDTI	ATGAA	3 cut(s)	149, 305, 326
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	76
XceI	RCATGY	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.