Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007079

Physical Location & Seq

Genomic Coordinates Forward (+)

6201098 .. 6202407

Gene Structure 1310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGGAGAAGCCGTCGTCGAAGAGAATCAAGTCAGAGGACGACCACGTGGCGAAGAAGGTGAAGACGGAGGAGGACCATTGCCGTAGCAAAAGCTTGGATACTGCGAAAGTCGATAAGTTGGTGTGGCTGATGAAGCTGTCGCAGGCAGTGGCCAAGTCTTGGAACTCACACCCTTCCTCTGATCTTCACCCCGTCGCCAAAGTCATCCTCTCCCTCGATCCAACCGATGAGACCTCCGCTGTGCAGTTCAAAATGGAGGGGTCTGCGACTGAGGTTGGTATGAAGCCGAAGAGTTATTCTATGAACACGTCGAAAGACTTTATTCCCATGTGCGTTTTTCCTGAGGCAAATCAAGGCAAGATTGTTGTGGAAGGGAAAGTAGAGCACTATGAAGCCCCATGGTACAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

138

Amino Acids

15.54

Weight (kDa)

6.96

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52270
rosa_chinensis	RchiOBHm_Chr1g0318621 RchiOBHm_Chr2g0111291 RchiOBHm_Chr6g0302021
rosa_laevigata	RLG00000011202 RLG00000017882
rosa_multiflora	Rmu_co8206050.1_g000001 Rmu_sc0005033.1_g000009 Rmu_sc0040640.1_g000001 Rmu_sc0040770.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166180
rosa_rugosa	Rorug05G0494200 Rorug05G0591000.1 Rorug06G0311100
rosa_samantha	Rh1AG035400 Rh1DG171200 Rh2CG228600 Rh2DG233100 Rh6AG423800 Rh6BG478500 Rh6CG436800 Rh6DG423900
rosa_wichuraiana	Rw2G009110 Rw2G017410 Rw6G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	162
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	153
AcvI	CACGTG	1 cut(s)	49
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	253
AjiI	CACGTC	1 cut(s)	312
AluBI	AGCT	2 cut(s)	96, 139
AluI	AGCT	2 cut(s)	96, 139
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	73, 182
AvaII	GGWCC	1 cut(s)	76
AxyI	CCTNAGG	1 cut(s)	345
BalI	TGGCCA	1 cut(s)	155
BbrPI	CACGTG	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	390
BceAI	ACGGC	1 cut(s)	69
BciVI	GTATCC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	227
BfuI	GTATCC	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	76
BmgBI	CACGTC	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	49
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	401
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	264, 336
BseRI	GAGGAG	2 cut(s)	20, 86
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	155
Bso31I	GGTCTC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	184, 220
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	265, 337
BspPI	GGATC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	2 cut(s)	184, 220
BssT1I	CCWWGG	1 cut(s)	401
Bst6I	CTCTTC	2 cut(s)	17, 287
BstBAI	YACGTR	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	273, 345
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	187, 223
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	2 cut(s)	184, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	71
Bsu36I	CCTNAGG	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	401
BtrI	CACGTC	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	2 cut(s)	331, 402
CviJI	RGCY	7 cut(s)	13, 96, 130, 139, 155, 289, 398
CviKI_1	RGCY	7 cut(s)	13, 96, 130, 139, 155, 289, 398
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	2 cut(s)	273, 345
DpnI	GATC	2 cut(s)	186, 222
DpnII	GATC	2 cut(s)	184, 220
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	17, 287
EarI	CTCTTC	2 cut(s)	17, 287
Eco130I	CCWWGG	1 cut(s)	401
Eco31I	GGTCTC	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	76
Eco72I	CACGTG	1 cut(s)	49
Eco81I	CCTNAGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	2 cut(s)	334, 405
FaiI	YATR	5 cut(s)	284, 305, 332, 393, 403
FatI	CATG	2 cut(s)	330, 401
FokI	GGATG	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	334, 405
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	1 cut(s)	27
HphI	GGTGA	2 cut(s)	73, 182
Hpy188I	TCNGA	2 cut(s)	37, 184
Hpy188III	TCNNGA	1 cut(s)	344
Hpy99I	CGWCG	4 cut(s)	19, 22, 200, 316
HpyAV	CCTTC	3 cut(s)	52, 186, 368
HpyCH4IV	ACGT	2 cut(s)	48, 311
HpyCH4V	TGCA	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	2 cut(s)	273, 345
HpySE526I	ACGT	2 cut(s)	48, 311
Hsp92II	CATG	2 cut(s)	334, 405
Kzo9I	GATC	2 cut(s)	184, 220
LpnPI	CCDG	2 cut(s)	131, 357
MaeII	ACGT	2 cut(s)	48, 311
MalI	GATC	2 cut(s)	186, 222
MboI	GATC	2 cut(s)	184, 220
MboII	GAAGA	5 cut(s)	34, 67, 76, 179, 304
MhlI	GDGCHC	1 cut(s)	390
MlsI	TGGCCA	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	248
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	136
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	2 cut(s)	184, 220
NlaIII	CATG	2 cut(s)	334, 405
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	27
PflMI	CCANNNNNTGG	1 cut(s)	162
PmaCI	CACGTG	1 cut(s)	49
PmlI	CACGTG	1 cut(s)	49
Ppu21I	YACGTR	1 cut(s)	49
PspCI	CACGTG	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
Sau3AI	GATC	2 cut(s)	184, 220
Sau96I	GGNCC	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	7 cut(s)	51, 63, 98, 141, 239, 279, 314
SinI	GGWCC	1 cut(s)	76
SsiI	CCGC	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	401
TaiI	ACGT	2 cut(s)	51, 314
TaqI	TCGA	4 cut(s)	20, 114, 219, 314
TfiI	GAWTC	1 cut(s)	27
TscAI	CASTG	1 cut(s)	156
TspDTI	ATGAA	4 cut(s)	149, 299, 320, 408
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.