Rw6G036720

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0017078
Physical Location & Seq
Forward (+)
61143945 .. 61145814
1870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G036720.1

Sequence Viewer

Length: 867 bp
ATGGATCATCATCATCTCGCTCTCCTCTCTCTTTTCTCTTCCTATCCTCCGCTGCCGCGTCCGCCCCAGGAGGAGCACGACTACAGGTTCGGAGTCTTCAAGGCCAACCTCCGCCGAGCCAAAATACATCAAGGGCTGGACCCCACCGCCTTCCACGGTGTCACCAAGTTCTCCGATCTCACTCCCAAGGAGTTTCGCCGGAATTTTCTCGGGCTCAAGAAGGGTCTCCGGCTACCGGAGGACGCCCACACGGCTCCGATCCTTCCGACCAATGATCTTCCCACCGACTTCGACTGGCGCGAGAAAGGTGCCGTCACGCCGGTCAAGGACCAGGGTTCGTGTGGATCATGCTGGTCGTTTAGTGCGGCCGGAGCACTGGAAGGAGCTCATTATTTGGCAACAGGGGAGCTCGTGAGTCTCAGCAGTCAGCAGCTTGTGGACTGTGATCATGAGTGTGATCCAGAAGAATATGGTTCATGTGACTCAGGCTGTAGTGGTGGACTGATGACCAATGCCTTTGAGTACGCACTCAAGGCTGGGGGTTTGGAGCAAGAGAAGGACTACCCTTACACTGGGACTGATCGCGGTACCTGCAAATTTGACAAGAGCAAAGTTGTTGCTACTGTCTCCAACTTCATCTCGTGCCCTTACATCTGCGCAAAACATCGTCTGGATCACGGGGTGCTTCTGGTGGGTTACGGCTCCTCTGGGTTTGCTCCGATACGCTTCAAGGAGAAGCCTTACTGGATCATAAAGAATTCATGGGGACAGAGTTGGGGAGAGGAAGGTTATTACAAGATCTGCAGGGGTCATAATGTTTGTGGGGTGGATAGTATGGTCTCTACCGTTGCTGCTATGCACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

288

Amino Acids

31.83

Weight (kDa)

6.35

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 23 - 65 2.5e-08 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 93 - 214 9.8e-41 Papain family cysteine protease
Peptidase_C1 PF00112 217 - 282 7.2e-20 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16190
fragaria_vesca FvH4_2g38940
malus_domestica MD08G1021600.v1.1 MD15G1019300.v1.1
prunus_persica Prupe.1G371600_v2.0.a1
pyrus_communis pycom08g01710
rosa_chinensis RchiOBHm_Chr6g0302031
rosa_laevigata RLG00000011201
rosa_roxburghii Rroxscaffold_7G00166170
rosa_rugosa Rorug06G0311100
rosa_samantha Rh6BG478400 Rh6DG424000
rosa_wichuraiana Rw6G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 658
Acc36I ACCTGC 1 cut(s) 599
Acc65I GGTACC 1 cut(s) 587
AccB1I GGYRCC 2 cut(s) 308, 587
AccII CGCG 3 cut(s) 58, 300, 585
AciI CCGC 7 cut(s) 50, 56, 62, 112, 147, 365, 585
AclWI GGATC 6 cut(s) 12, 253, 352, 452, 681, 755
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 3 cut(s) 202, 596, 757
AcyI GRCGYC 1 cut(s) 243
AdeI CACNNNGTG 1 cut(s) 682
AfaI GTAC 2 cut(s) 524, 589
AfiI CCNNNNNNNGG 2 cut(s) 235, 572
AgsI TTSAA 2 cut(s) 100, 730
AjnI CCWGG 2 cut(s) 66, 330
AluBI AGCT 3 cut(s) 386, 409, 433
AluI AGCT 3 cut(s) 386, 409, 433
Alw21I GWGCWC 4 cut(s) 78, 376, 388, 411
Alw26I GTCTC 4 cut(s) 230, 422, 631, 844
AlwI GGATC 6 cut(s) 12, 253, 352, 452, 681, 755
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 102, 366
ApeKI GCWGC 3 cut(s) 52, 430, 851
ApoI RAATTY 3 cut(s) 202, 596, 757
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
Asp718I GGTACC 1 cut(s) 587
AspLEI GCGC 2 cut(s) 300, 659
AspS9I GGNCC 2 cut(s) 139, 328
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 2 cut(s) 139, 328
BaeGI GKGCMC 1 cut(s) 647
BanI GGYRCC 2 cut(s) 308, 587
BanII GRGCYC 3 cut(s) 216, 388, 411
BauI CACGAG 2 cut(s) 410, 640
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 4 cut(s) 78, 376, 388, 411
BbvI GCAGC 3 cut(s) 39, 442, 838
BceAI ACGGC 3 cut(s) 267, 296, 715
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciT130I CCWGG 2 cut(s) 68, 332
BclI TGATCA 1 cut(s) 445
BcoDI GTCTC 4 cut(s) 230, 422, 631, 844
BfmI CTRYAG 3 cut(s) 82, 490, 802
BfuAI ACCTGC 1 cut(s) 599
BglI GCCNNNNNGGC 1 cut(s) 251
BglII AGATCT 1 cut(s) 798
BisI GCNGC 5 cut(s) 53, 56, 366, 431, 852
BlsI GCNGC 5 cut(s) 54, 57, 367, 432, 853
Bme1390I CCNGG 2 cut(s) 68, 332
Bme18I GGWCC 2 cut(s) 139, 328
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 2 cut(s) 139, 328
BmiI GGNNCC 5 cut(s) 141, 255, 310, 589, 703
BmrFI CCNGG 2 cut(s) 68, 332
BmrI ACTGGG 1 cut(s) 582
BmuI ACTGGG 1 cut(s) 582
BpiI GAAGAC 1 cut(s) 88
BpuEI CTTGAG 2 cut(s) 200, 515
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 243
BsaI GGTCTC 2 cut(s) 230, 844
BsaJI CCNNGG 4 cut(s) 66, 154, 186, 331
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 572
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 4 cut(s) 299, 381, 577, 749
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 2 cut(s) 68, 332
BseDI CCNNGG 4 cut(s) 66, 154, 186, 331
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 2 cut(s) 235, 572
BseMII CTCAG 2 cut(s) 433, 498
BseNI ACTGG 4 cut(s) 299, 381, 577, 749
BseRI GAGGAG 3 cut(s) 14, 86, 694
BseSI GKGCMC 1 cut(s) 647
BseX3I CGGCCG 1 cut(s) 366
BseXI GCAGC 3 cut(s) 39, 442, 838
BseYI CCCAGC 1 cut(s) 536
Bsh1236I CGCG 3 cut(s) 58, 300, 585
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 2 cut(s) 104, 368
BshNI GGYRCC 2 cut(s) 308, 587
BsiEI CGRYCG 1 cut(s) 369
BsiHKAI GWGCWC 4 cut(s) 78, 376, 388, 411
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 5 cut(s) 199, 229, 236, 320, 369
BslFI GGGAC 2 cut(s) 589, 780
BslI CCNNNNNNNGG 2 cut(s) 235, 572
BsmAI GTCTC 4 cut(s) 230, 422, 631, 844
BsmFI GGGAC 2 cut(s) 589, 780
BsnI GGCC 2 cut(s) 104, 368
Bso31I GGTCTC 2 cut(s) 230, 844
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 6 cut(s) 78, 216, 376, 388, 411, 647
BspACI CCGC 7 cut(s) 50, 56, 62, 112, 147, 365, 585
BspANI GGCC 2 cut(s) 104, 368
BspCNI CTCAG 2 cut(s) 432, 497
BspFNI CGCG 3 cut(s) 58, 300, 585
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 5 cut(s) 141, 255, 310, 589, 703
BspMAI CTGCAG 1 cut(s) 806
BspMI ACCTGC 1 cut(s) 599
BspPI GGATC 6 cut(s) 12, 253, 352, 452, 681, 755
BspT107I GGYRCC 2 cut(s) 308, 587
BspTNI GGTCTC 2 cut(s) 230, 844
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 4 cut(s) 299, 381, 577, 749
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 4 cut(s) 66, 154, 186, 331
BssNI GRCGYC 1 cut(s) 243
BssSI CACGAG 2 cut(s) 410, 640
BssT1I CCWWGG 1 cut(s) 186
Bst2BI CACGAG 2 cut(s) 410, 640
Bst2UI CCWGG 2 cut(s) 68, 332
Bst4CI ACNGT 4 cut(s) 158, 443, 625, 847
Bst6I CTCTTC 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 419, 484
BstDSI CCRYGG 1 cut(s) 154
BstFNI CGCG 3 cut(s) 58, 300, 585
BstHHI GCGC 2 cut(s) 300, 659
BstMAI GTCTC 4 cut(s) 230, 422, 631, 844
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 5 cut(s) 61, 251, 371, 533, 591
BstNI CCWGG 2 cut(s) 68, 332
BstSCI CCNGG 2 cut(s) 66, 330
BstSFI CTRYAG 3 cut(s) 82, 490, 802
BstSLI GKGCMC 1 cut(s) 647
BstUI CGCG 3 cut(s) 58, 300, 585
BstV1I GCAGC 3 cut(s) 39, 442, 838
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 798
BstYI RGATCY 1 cut(s) 798
BstZI CGGCCG 1 cut(s) 366
BsuRI GGCC 2 cut(s) 104, 368
BtgI CCRYGG 1 cut(s) 154
BtsIMutI CAGTG 2 cut(s) 374, 570
BveI ACCTGC 1 cut(s) 599
CciI TCATGA 1 cut(s) 448
CfoI GCGC 2 cut(s) 300, 659
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 139, 328
CseI GACGC 2 cut(s) 47, 251
Csp6I GTAC 2 cut(s) 523, 588
CviAII CATG 5 cut(s) 348, 449, 477, 762, 864
CviQI GTAC 2 cut(s) 523, 588
DdeI CTNAG 2 cut(s) 419, 484
DraIII CACNNNGTG 1 cut(s) 682
EaeI YGGCCR 1 cut(s) 366
EagI CGGCCG 1 cut(s) 366
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
EciI GGCGGA 2 cut(s) 51, 101
Ecl136II GAGCTC 2 cut(s) 386, 409
EclXI CGGCCG 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 3 cut(s) 216, 388, 411
Eco31I GGTCTC 2 cut(s) 230, 844
Eco47I GGWCC 2 cut(s) 139, 328
Eco52I CGGCCG 1 cut(s) 366
Eco53kI GAGCTC 2 cut(s) 386, 409
Eco88I CYCGRG 1 cut(s) 209
EcoICRI GAGCTC 2 cut(s) 386, 409
EcoRI GAATTC 1 cut(s) 757
EcoRII CCWGG 2 cut(s) 66, 330
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 3 cut(s) 216, 388, 411
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 5 cut(s) 351, 452, 480, 765, 867
FaqI GGGAC 2 cut(s) 589, 780
FatI CATG 5 cut(s) 347, 448, 476, 761, 863
FbaI TGATCA 1 cut(s) 445
Fnu4HI GCNGC 5 cut(s) 53, 56, 366, 431, 852
FriOI GRGCYC 3 cut(s) 216, 388, 411
Fsp4HI GCNGC 5 cut(s) 53, 56, 366, 431, 852
FspI TGCGCA 1 cut(s) 658
GlaI GCGC 2 cut(s) 299, 658
GluI GCNGC 5 cut(s) 53, 56, 366, 431, 852
GsaI CCCAGC 1 cut(s) 540
HaeIII GGCC 2 cut(s) 104, 368
HapII CCGG 5 cut(s) 199, 229, 236, 320, 369
HgaI GACGC 2 cut(s) 47, 251
HhaI GCGC 2 cut(s) 300, 659
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 5 cut(s) 351, 452, 480, 765, 867
Hin6I GCGC 2 cut(s) 298, 657
HinP1I GCGC 2 cut(s) 298, 657
HinfI GANTC 3 cut(s) 93, 415, 482
HpaII CCGG 5 cut(s) 199, 229, 236, 320, 369
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 2 cut(s) 439, 500
Hpy188I TCNGA 5 cut(s) 92, 175, 258, 267, 720
Hpy188III TCNNGA 5 cut(s) 217, 412, 449, 461, 671
Hpy8I GTNNAC 2 cut(s) 439, 500
HpyAV CCTTC 6 cut(s) 160, 214, 272, 374, 550, 779
HpyCH4III ACNGT 4 cut(s) 158, 443, 625, 847
HpyCH4V TGCA 3 cut(s) 594, 804, 859
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 251, 371, 533, 591
HpyF3I CTNAG 2 cut(s) 419, 484
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 5 cut(s) 351, 452, 480, 765, 867
HspAI GCGC 2 cut(s) 298, 657
KpnI GGTACC 1 cut(s) 591
Ksp22I TGATCA 1 cut(s) 445
LmnI GCTCC 8 cut(s) 73, 259, 371, 383, 406, 547, 707, 721
Lsp1109I GCAGC 3 cut(s) 39, 442, 838
MaeIII GTNAC 4 cut(s) 160, 313, 479, 695
MboII GAAGA 4 cut(s) 30, 88, 269, 476
MflI RGATCY 1 cut(s) 798
MhlI GDGCHC 6 cut(s) 78, 216, 376, 388, 411, 647
MluCI AATT 3 cut(s) 202, 596, 757
MlyI GAGTC 3 cut(s) 102, 424, 476
MmeI TCCRAC 2 cut(s) 290, 654
MnlI CCTC 7 cut(s) 35, 57, 64, 119, 232, 715, 775
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 5 cut(s) 199, 229, 236, 320, 369
MspR9I CCNGG 2 cut(s) 68, 332
MvaI CCWGG 2 cut(s) 68, 332
MvnI CGCG 3 cut(s) 58, 300, 585
MwoI GCNNNNNNNGC 5 cut(s) 61, 251, 371, 533, 591
NlaIII CATG 5 cut(s) 351, 452, 480, 765, 867
NlaIV GGNNCC 5 cut(s) 141, 255, 310, 589, 703
NmeAIII GCCGAG 1 cut(s) 140
NmuCI GTSAC 3 cut(s) 160, 313, 479
NsbI TGCGCA 1 cut(s) 658
PagI TCATGA 1 cut(s) 448
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PkrI GCNGC 5 cut(s) 54, 57, 367, 432, 853
PleI GAGTC 3 cut(s) 101, 423, 476
PpsI GAGTC 3 cut(s) 101, 423, 476
Psp124BI GAGCTC 2 cut(s) 388, 411
Psp6I CCWGG 2 cut(s) 66, 330
PspFI CCCAGC 1 cut(s) 536
PspGI CCWGG 2 cut(s) 66, 330
PspN4I GGNNCC 5 cut(s) 141, 255, 310, 589, 703
PspPI GGNCC 2 cut(s) 139, 328
PstI CTGCAG 1 cut(s) 806
PsuI RGATCY 1 cut(s) 798
RsaI GTAC 2 cut(s) 524, 589
RsaNI GTAC 2 cut(s) 523, 588
RseI CAYNNNNRTG 1 cut(s) 453
SacI GAGCTC 2 cut(s) 388, 411
SatI GCNGC 5 cut(s) 53, 56, 366, 431, 852
Sau96I GGNCC 2 cut(s) 139, 328
SchI GAGTC 3 cut(s) 102, 424, 476
ScrFI CCNGG 2 cut(s) 68, 332
SduI GDGCHC 6 cut(s) 78, 216, 376, 388, 411, 647
SetI ASST 8 cut(s) 89, 111, 310, 388, 411, 435, 593, 790
SfcI CTRYAG 3 cut(s) 82, 490, 802
SinI GGWCC 2 cut(s) 139, 328
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 2 cut(s) 215, 530
SmoI CTYRAG 2 cut(s) 215, 530
Sse9I AATT 3 cut(s) 202, 596, 757
SsiI CCGC 7 cut(s) 50, 56, 62, 112, 147, 365, 585
SstI GAGCTC 2 cut(s) 388, 411
StyD4I CCNGG 2 cut(s) 66, 330
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 4 cut(s) 158, 443, 625, 847
TaqI TCGA 1 cut(s) 291
TasI AATT 3 cut(s) 202, 596, 757
TauI GCSGC 2 cut(s) 58, 368
TscAI CASTG 2 cut(s) 381, 577
TseFI GTSAC 3 cut(s) 160, 313, 479
TseI GCWGC 3 cut(s) 52, 430, 851
Tsp45I GTSAC 3 cut(s) 160, 313, 479
TspDTI ATGAA 3 cut(s) 465, 625, 750
TspRI CASTG 2 cut(s) 381, 577
VpaK11BI GGWCC 2 cut(s) 139, 328
XapI RAATTY 3 cut(s) 202, 596, 757
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.