Rroxscaffold_7G00166170

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017078
Physical Location & Seq
Reverse (-)
7723997 .. 7726254
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00166170.1

Sequence Viewer

Length: 735 bp
ATGCACCAGGGGCTGGACCCCACTGCCGTCCACGGTGTCACCAAGTTCTCCGATCTCACTCCCAAGGAGTTTCGCCGGAATTTTCTCGGGCTCAAGAAGGGTCTCCGGCTACCGGAGGACGCCCACACGGCTCCGATCCTTCCGACCAATGATCTTCCCACCGACTTCGACTGGCGCGAGAAAGGTGCCGTCACGCCGGTCAAGGACCAGGGTTCGTGTGGATCATGCTGGTCGTTTAGTGCGGCCGGAGCACTGGAAGGAGCTCATTATTTGGCAACAGGGGAGCTCGTGAGTCTCAGCAGTCAGCAGCTTGTGGACTGTGATCATGAGTGTGATCCAGAAGAATATGGTTCATGTGACTCAGGCTGTAGTGGTGGACTGATGACCAATGCCTTTGAGTACGCACTCAAGGCTGGGGGTTTGGAGCAAGAGAAGGACTACCCTTACACTGGGACTGATCGCGGTACCTGCAAATTTGACAAGAGCAAAGTTGTTGCTACTGTCTCCAACTTCAGTGTTGTTTCCCTTGACGAAGATCAAATTGCTGCAAATTTGGTCCACAATGGCCCTCTTGCAATTGGCATCAATGCGGTGTTTATGCAAACATACGTGGGGGAGTCTCATGCCCTTACATCTGCGCAAAACATCGTCTGGATCACGGGGTGCTTCTGGTGGGTTACGGCTCCTCTGGGTTCGCTCCGATACGCTTCAAGGAGAAGCCTTACTGGATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

244

Amino Acids

26.31

Weight (kDa)

5.09

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 52 - 203 1.3e-47 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16190
fragaria_vesca FvH4_2g38940
malus_domestica MD08G1021600.v1.1 MD15G1019300.v1.1
prunus_persica Prupe.1G371600_v2.0.a1
pyrus_communis pycom08g01710
rosa_chinensis RchiOBHm_Chr6g0302031
rosa_laevigata RLG00000011201
rosa_roxburghii Rroxscaffold_7G00166170
rosa_rugosa Rorug06G0311100
rosa_samantha Rh6BG478400 Rh6DG424000
rosa_wichuraiana Rw6G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 639
Acc36I ACCTGC 1 cut(s) 476
Acc65I GGTACC 1 cut(s) 464
AccB1I GGYRCC 2 cut(s) 185, 464
AccB7I CCANNNNNTGG 1 cut(s) 13
AccII CGCG 2 cut(s) 177, 462
AciI CCGC 3 cut(s) 242, 462, 590
AclWI GGATC 4 cut(s) 130, 229, 329, 662
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 3 cut(s) 79, 473, 550
AcuI CTGAAG 1 cut(s) 496
AcyI GRCGYC 1 cut(s) 120
AdeI CACNNNGTG 1 cut(s) 663
AfaI GTAC 2 cut(s) 401, 466
AfiI CCNNNNNNNGG 3 cut(s) 13, 112, 449
AgsI TTSAA 1 cut(s) 711
AjnI CCWGG 2 cut(s) 6, 207
AluBI AGCT 3 cut(s) 263, 286, 310
AluI AGCT 3 cut(s) 263, 286, 310
Alw21I GWGCWC 3 cut(s) 253, 265, 288
Alw26I GTCTC 4 cut(s) 107, 299, 508, 624
AlwI GGATC 4 cut(s) 130, 229, 329, 662
AlwNI CAGNNNCTG 1 cut(s) 13
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 2 cut(s) 243, 565
ApeKI GCWGC 2 cut(s) 307, 545
ApoI RAATTY 3 cut(s) 79, 473, 550
Asp718I GGTACC 1 cut(s) 464
AspLEI GCGC 2 cut(s) 177, 640
AspS9I GGNCC 4 cut(s) 16, 205, 556, 566
AsuHPI GGTGA 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 3 cut(s) 16, 205, 556
BanI GGYRCC 2 cut(s) 185, 464
BanII GRGCYC 3 cut(s) 93, 265, 288
BauI CACGAG 1 cut(s) 287
Bbv12I GWGCWC 3 cut(s) 253, 265, 288
BbvI GCAGC 2 cut(s) 319, 532
BceAI ACGGC 4 cut(s) 11, 144, 173, 696
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 2 cut(s) 8, 209
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 4 cut(s) 107, 299, 508, 624
BfmI CTRYAG 1 cut(s) 367
BfuAI ACCTGC 1 cut(s) 476
BglI GCCNNNNNGGC 1 cut(s) 128
BisI GCNGC 3 cut(s) 243, 308, 546
BlsI GCNGC 3 cut(s) 244, 309, 547
Bme1390I CCNGG 2 cut(s) 8, 209
Bme18I GGWCC 3 cut(s) 16, 205, 556
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 4 cut(s) 16, 205, 556, 566
BmiI GGNNCC 5 cut(s) 18, 132, 187, 466, 684
BmrFI CCNGG 2 cut(s) 8, 209
BmrI ACTGGG 1 cut(s) 459
BmsI GCATC 1 cut(s) 591
BmuI ACTGGG 1 cut(s) 459
BpuEI CTTGAG 2 cut(s) 77, 392
BsaAI YACGTR 1 cut(s) 610
BsaHI GRCGYC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 4 cut(s) 7, 31, 63, 208
BsaWI WCCGGW 1 cut(s) 112
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 112, 449
Bse118I RCCGGY 1 cut(s) 196
Bse1I ACTGG 4 cut(s) 176, 258, 454, 730
BseBI CCWGG 2 cut(s) 8, 209
BseDI CCNNGG 4 cut(s) 7, 31, 63, 208
BseLI CCNNNNNNNGG 3 cut(s) 13, 112, 449
BseMII CTCAG 2 cut(s) 310, 375
BseNI ACTGG 4 cut(s) 176, 258, 454, 730
BseRI GAGGAG 1 cut(s) 675
BseX3I CGGCCG 1 cut(s) 243
BseXI GCAGC 2 cut(s) 319, 532
BseYI CCCAGC 1 cut(s) 413
Bsh1236I CGCG 2 cut(s) 177, 462
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 2 cut(s) 245, 567
BshNI GGYRCC 2 cut(s) 185, 464
BsiEI CGRYCG 1 cut(s) 246
BsiHKAI GWGCWC 3 cut(s) 253, 265, 288
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 5 cut(s) 76, 106, 113, 197, 246
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 3 cut(s) 13, 112, 449
BsmAI GTCTC 4 cut(s) 107, 299, 508, 624
BsmFI GGGAC 1 cut(s) 466
BsnI GGCC 2 cut(s) 245, 567
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 4 cut(s) 93, 253, 265, 288
BspACI CCGC 3 cut(s) 242, 462, 590
BspANI GGCC 2 cut(s) 245, 567
BspCNI CTCAG 2 cut(s) 309, 374
BspFNI CGCG 2 cut(s) 177, 462
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 5 cut(s) 18, 132, 187, 466, 684
BspMI ACCTGC 1 cut(s) 476
BspPI GGATC 4 cut(s) 130, 229, 329, 662
BspT107I GGYRCC 2 cut(s) 185, 464
BspTNI GGTCTC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 196
BsrI ACTGG 4 cut(s) 176, 258, 454, 730
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 4 cut(s) 7, 31, 63, 208
BssNI GRCGYC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 287
BssT1I CCWWGG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 287
Bst2UI CCWGG 2 cut(s) 8, 209
Bst4CI ACNGT 3 cut(s) 35, 320, 502
BstACI GRCGYC 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 610
BstDEI CTNAG 2 cut(s) 296, 361
BstDSI CCRYGG 1 cut(s) 31
BstFNI CGCG 2 cut(s) 177, 462
BstHHI GCGC 2 cut(s) 177, 640
BstMAI GTCTC 4 cut(s) 107, 299, 508, 624
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 5 cut(s) 10, 128, 248, 410, 468
BstNI CCWGG 2 cut(s) 8, 209
BstSCI CCNGG 2 cut(s) 6, 207
BstSFI CTRYAG 1 cut(s) 367
BstUI CGCG 2 cut(s) 177, 462
BstV1I GCAGC 2 cut(s) 319, 532
BstZI CGGCCG 1 cut(s) 243
BsuRI GGCC 2 cut(s) 245, 567
BtgI CCRYGG 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 4 cut(s) 21, 251, 447, 520
BveI ACCTGC 1 cut(s) 476
CaiI CAGNNNCTG 1 cut(s) 13
CciI TCATGA 1 cut(s) 325
CfoI GCGC 2 cut(s) 177, 640
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 4 cut(s) 16, 205, 556, 566
CseI GACGC 1 cut(s) 128
Csp6I GTAC 2 cut(s) 400, 465
CviAII CATG 4 cut(s) 225, 326, 354, 623
CviQI GTAC 2 cut(s) 400, 465
DdeI CTNAG 2 cut(s) 296, 361
DraIII CACNNNGTG 1 cut(s) 663
EaeI YGGCCR 1 cut(s) 243
EagI CGGCCG 1 cut(s) 243
Ecl136II GAGCTC 2 cut(s) 263, 286
EclXI CGGCCG 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 63
Eco24I GRGCYC 3 cut(s) 93, 265, 288
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 3 cut(s) 16, 205, 556
Eco52I CGGCCG 1 cut(s) 243
Eco53kI GAGCTC 2 cut(s) 263, 286
Eco57I CTGAAG 1 cut(s) 496
Eco88I CYCGRG 1 cut(s) 86
EcoICRI GAGCTC 2 cut(s) 263, 286
EcoRII CCWGG 2 cut(s) 6, 207
EcoT14I CCWWGG 1 cut(s) 63
EcoT38I GRGCYC 3 cut(s) 93, 265, 288
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 4 cut(s) 228, 329, 357, 626
FaiI YATR 8 cut(s) 226, 327, 348, 355, 599, 607, 624, 733
FaqI GGGAC 1 cut(s) 466
FatI CATG 4 cut(s) 224, 325, 353, 622
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 243, 308, 546
FriOI GRGCYC 3 cut(s) 93, 265, 288
Fsp4HI GCNGC 3 cut(s) 243, 308, 546
FspI TGCGCA 1 cut(s) 639
GlaI GCGC 2 cut(s) 176, 639
GluI GCNGC 3 cut(s) 243, 308, 546
GsaI CCCAGC 1 cut(s) 417
HaeIII GGCC 2 cut(s) 245, 567
HapII CCGG 5 cut(s) 76, 106, 113, 197, 246
HgaI GACGC 1 cut(s) 128
HhaI GCGC 2 cut(s) 177, 640
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 4 cut(s) 228, 329, 357, 626
Hin6I GCGC 2 cut(s) 175, 638
HinP1I GCGC 2 cut(s) 175, 638
HinfI GANTC 3 cut(s) 292, 359, 617
HpaII CCGG 5 cut(s) 76, 106, 113, 197, 246
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 4 cut(s) 31, 316, 377, 559
Hpy188I TCNGA 4 cut(s) 52, 135, 144, 701
Hpy188III TCNNGA 5 cut(s) 94, 289, 326, 338, 652
Hpy8I GTNNAC 4 cut(s) 31, 316, 377, 559
HpyAV CCTTC 4 cut(s) 91, 149, 251, 427
HpyCH4III ACNGT 3 cut(s) 35, 320, 502
HpyCH4IV ACGT 1 cut(s) 609
HpyCH4V TGCA 5 cut(s) 4, 471, 548, 575, 601
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 128, 248, 410, 468
HpyF3I CTNAG 2 cut(s) 296, 361
HpySE526I ACGT 1 cut(s) 609
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 4 cut(s) 228, 329, 357, 626
HspAI GCGC 2 cut(s) 175, 638
KpnI GGTACC 1 cut(s) 468
Ksp22I TGATCA 1 cut(s) 322
LmnI GCTCC 7 cut(s) 136, 248, 260, 283, 424, 688, 702
Lsp1109I GCAGC 2 cut(s) 319, 532
LweI GCATC 1 cut(s) 591
MaeII ACGT 1 cut(s) 609
MaeIII GTNAC 4 cut(s) 37, 190, 356, 676
MboII GAAGA 3 cut(s) 146, 353, 545
MfeI CAATTG 1 cut(s) 576
MhlI GDGCHC 4 cut(s) 93, 253, 265, 288
MluCI AATT 5 cut(s) 79, 473, 540, 550, 576
MlyI GAGTC 3 cut(s) 301, 353, 626
MmeI TCCRAC 2 cut(s) 167, 531
MnlI CCTC 3 cut(s) 109, 579, 696
MslI CAYNNNNRTG 1 cut(s) 330
MspI CCGG 5 cut(s) 76, 106, 113, 197, 246
MspR9I CCNGG 2 cut(s) 8, 209
MunI CAATTG 1 cut(s) 576
MvaI CCWGG 2 cut(s) 8, 209
MvnI CGCG 2 cut(s) 177, 462
MwoI GCNNNNNNNGC 5 cut(s) 10, 128, 248, 410, 468
NlaIII CATG 4 cut(s) 228, 329, 357, 626
NlaIV GGNNCC 5 cut(s) 18, 132, 187, 466, 684
NmuCI GTSAC 3 cut(s) 37, 190, 356
NsbI TGCGCA 1 cut(s) 639
PagI TCATGA 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PflMI CCANNNNNTGG 1 cut(s) 13
PkrI GCNGC 3 cut(s) 244, 309, 547
PleI GAGTC 3 cut(s) 300, 353, 625
PpsI GAGTC 3 cut(s) 300, 353, 625
Ppu21I YACGTR 1 cut(s) 610
Psp124BI GAGCTC 2 cut(s) 265, 288
Psp6I CCWGG 2 cut(s) 6, 207
PspFI CCCAGC 1 cut(s) 413
PspGI CCWGG 2 cut(s) 6, 207
PspN4I GGNNCC 5 cut(s) 18, 132, 187, 466, 684
PspPI GGNCC 4 cut(s) 16, 205, 556, 566
PstNI CAGNNNCTG 1 cut(s) 13
RsaI GTAC 2 cut(s) 401, 466
RsaNI GTAC 2 cut(s) 400, 465
RseI CAYNNNNRTG 1 cut(s) 330
SacI GAGCTC 2 cut(s) 265, 288
SatI GCNGC 3 cut(s) 243, 308, 546
Sau96I GGNCC 4 cut(s) 16, 205, 556, 566
SchI GAGTC 3 cut(s) 301, 353, 626
ScrFI CCNGG 2 cut(s) 8, 209
SduI GDGCHC 4 cut(s) 93, 253, 265, 288
SetI ASST 6 cut(s) 187, 265, 288, 312, 470, 612
SfaNI GCATC 1 cut(s) 591
SfcI CTRYAG 1 cut(s) 367
SinI GGWCC 3 cut(s) 16, 205, 556
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 2 cut(s) 92, 407
SmoI CTYRAG 2 cut(s) 92, 407
Sse9I AATT 5 cut(s) 79, 473, 540, 550, 576
SsiI CCGC 3 cut(s) 242, 462, 590
SstI GAGCTC 2 cut(s) 265, 288
StyD4I CCNGG 2 cut(s) 6, 207
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 3 cut(s) 35, 320, 502
TaiI ACGT 1 cut(s) 612
TaqI TCGA 1 cut(s) 168
TasI AATT 5 cut(s) 79, 473, 540, 550, 576
TauI GCSGC 1 cut(s) 245
TscAI CASTG 4 cut(s) 28, 258, 454, 520
TseFI GTSAC 3 cut(s) 37, 190, 356
TseI GCWGC 2 cut(s) 307, 545
Tsp45I GTSAC 3 cut(s) 37, 190, 356
TspDTI ATGAA 1 cut(s) 342
TspRI CASTG 4 cut(s) 28, 258, 454, 520
Van91I CCANNNNNTGG 1 cut(s) 13
VpaK11BI GGWCC 3 cut(s) 16, 205, 556
XapI RAATTY 3 cut(s) 79, 473, 550
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.