RLG00000011201

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017078
Physical Location & Seq
Reverse (-)
7605704 .. 7607914
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011201

Sequence Viewer

Length: 1098 bp
ATGGATCATCATCATCATCTCGCTCTCCTCTCTCTTTTTCTCTTCCTATCCTCCGCTGCCGCGTCCGCCGTAAGCGACGGTGGCGATCCTTTCATCCGACAAGTCGTGCCGGAGGCGGAGGAGGATCCACTCCTCCACGCGGAGCATCACTTCTCAAACTTCAAAGCCACCTTCGGAAAGACCTACGCGAGCCAGGAGGAGCACGACTACAGGTTCGGCGTCTTCAAGGCCAACCTCCGCCGAGCCAAAATACACCAGGGGCTGGACCCCACCGCCGTCCACGGTGTCACCAAGTTCTCCGATCTCACTCCCAAGGAGTTTCGCCGGAATTTTCTCGGGCTCAAGAAGGGTCTCCGGCTACCGGAGGACGCCCACACGGCTCCGATCCTTCCGACCAATGATCTTCCCACCGACTTCGACTGGCGCGAGAAAGGTGCCGTCACGCCGGTCAAGGACCAGGGTTCGTGTGGATCATGCTGGTCGTTTAGTGCGGCCGGAGCACTGGAAGGAGCTCATTATTTGGCAACAGGGGAGCTCGTGAGTCTCAGCAGTCAGCAGCTTGTGGACTGTGATCATGAGTGTGATCCAGAAGAATATGGTTCATGTGACTCAGGCTGTAGTGGTGGACTGATGACGAATGCCTTTGAGTACGCACTCAAGGCTGGGGGTTTGGAGCAAGAGAAGGACTACCCTTACACTGGGACTGATCGCGGTACCTGCAAATTTGACAAGAGCAAAGTTGTTGCTACTGTCTCCAACTTCAGTGTTGTTTCCCTTGACGAAGATCAAATTGCTGCAAATTTGGTCCACAATGGCCCTCTTGCAATTGGCATCAATGCGGTGTTCATGCAAACATACGTGGGGGGAGTCTCATGCCCTTACGTCTGCGCAAAACATCGTCTGGATCACGGGGTGCTTCTGGTGGGTTACGGCTCCTCTGGGTTTGCTCCGATACGCTTCAAGGAGAAGCCTTACTGGATCATAAAGAATTCATGGGGACAGAGTTGGGGAGAGGAAGGGTATTACAAGATCTGCAGGGGTCATAATGTTTGTGGGGTGGATAGCATGGTCTCAACCGTTGCTGCTATGCACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

366

Amino Acids

39.85

Weight (kDa)

5.81

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 51 - 107 9.2e-15 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 135 - 359 1.8e-75 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16190
fragaria_vesca FvH4_2g38940
malus_domestica MD08G1021600.v1.1 MD15G1019300.v1.1
prunus_persica Prupe.1G371600_v2.0.a1
pyrus_communis pycom08g01710
rosa_chinensis RchiOBHm_Chr6g0302031
rosa_laevigata RLG00000011201
rosa_roxburghii Rroxscaffold_7G00166170
rosa_rugosa Rorug06G0311100
rosa_samantha Rh6BG478400 Rh6DG424000
rosa_wichuraiana Rw6G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 889
Acc36I ACCTGC 1 cut(s) 725
Acc65I GGTACC 1 cut(s) 713
AccB1I GGYRCC 2 cut(s) 434, 713
AccB7I CCANNNNNTGG 1 cut(s) 262
AccII CGCG 5 cut(s) 62, 140, 188, 426, 711
AclWI GGATC 9 cut(s) 12, 80, 119, 132, 379, 478, 578, 912, 986
AcoI YGGCCR 1 cut(s) 492
AcsI RAATTY 4 cut(s) 328, 722, 799, 988
AcuI CTGAAG 1 cut(s) 745
AcyI GRCGYC 2 cut(s) 219, 369
AdeI CACNNNGTG 1 cut(s) 913
AfaI GTAC 2 cut(s) 650, 715
AfiI CCNNNNNNNGG 4 cut(s) 139, 262, 361, 698
AgsI TTSAA 3 cut(s) 163, 226, 961
AjnI CCWGG 3 cut(s) 192, 255, 456
AluBI AGCT 3 cut(s) 512, 535, 559
AluI AGCT 3 cut(s) 512, 535, 559
Alw21I GWGCWC 4 cut(s) 204, 502, 514, 537
Alw26I GTCTC 5 cut(s) 356, 548, 757, 874, 1075
AlwI GGATC 9 cut(s) 12, 80, 119, 132, 379, 478, 578, 912, 986
AlwNI CAGNNNCTG 1 cut(s) 262
Ama87I CYCGRG 1 cut(s) 335
AoxI GGCC 3 cut(s) 228, 492, 814
ApeKI GCWGC 4 cut(s) 56, 556, 794, 1082
ApoI RAATTY 4 cut(s) 328, 722, 799, 988
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
Asp718I GGTACC 1 cut(s) 713
AspLEI GCGC 2 cut(s) 426, 890
AspS9I GGNCC 4 cut(s) 265, 454, 805, 815
AsuHPI GGTGA 1 cut(s) 280
AvaI CYCGRG 1 cut(s) 335
AvaII GGWCC 3 cut(s) 265, 454, 805
BamHI GGATCC 1 cut(s) 124
BanI GGYRCC 2 cut(s) 434, 713
BanII GRGCYC 3 cut(s) 342, 514, 537
BauI CACGAG 1 cut(s) 536
BbsI GAAGAC 1 cut(s) 214
Bbv12I GWGCWC 4 cut(s) 204, 502, 514, 537
BbvI GCAGC 4 cut(s) 43, 568, 781, 1069
BceAI ACGGC 5 cut(s) 53, 260, 393, 422, 946
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BciT130I CCWGG 3 cut(s) 194, 257, 458
BclI TGATCA 1 cut(s) 571
BcoDI GTCTC 5 cut(s) 356, 548, 757, 874, 1075
BfmI CTRYAG 3 cut(s) 208, 616, 1033
BfuAI ACCTGC 1 cut(s) 725
BglI GCCNNNNNGGC 1 cut(s) 377
BglII AGATCT 1 cut(s) 1029
BisI GCNGC 6 cut(s) 57, 60, 492, 557, 795, 1083
BlsI GCNGC 6 cut(s) 58, 61, 493, 558, 796, 1084
Bme1390I CCNGG 3 cut(s) 194, 257, 458
Bme18I GGWCC 3 cut(s) 265, 454, 805
BmeT110I CYCGRG 1 cut(s) 335
BmgT120I GGNCC 4 cut(s) 265, 454, 805, 815
BmiI GGNNCC 6 cut(s) 126, 267, 381, 436, 715, 934
BmrFI CCNGG 3 cut(s) 194, 257, 458
BmrI ACTGGG 1 cut(s) 708
BmsI GCATC 2 cut(s) 154, 840
BmuI ACTGGG 1 cut(s) 708
BpiI GAAGAC 1 cut(s) 214
BpuEI CTTGAG 2 cut(s) 326, 641
BsaAI YACGTR 1 cut(s) 859
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 2 cut(s) 219, 369
BsaI GGTCTC 2 cut(s) 356, 1075
BsaJI CCNNGG 4 cut(s) 256, 280, 312, 457
BsaWI WCCGGW 1 cut(s) 361
Bsc4I CCNNNNNNNGG 4 cut(s) 139, 262, 361, 698
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 4 cut(s) 425, 507, 703, 980
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 3 cut(s) 194, 257, 458
BseDI CCNNGG 4 cut(s) 256, 280, 312, 457
BseGI GGATG 1 cut(s) 93
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 4 cut(s) 139, 262, 361, 698
BseMII CTCAG 2 cut(s) 559, 624
BseNI ACTGG 4 cut(s) 425, 507, 703, 980
BseRI GAGGAG 5 cut(s) 17, 122, 134, 212, 925
BseX3I CGGCCG 1 cut(s) 492
BseXI GCAGC 4 cut(s) 43, 568, 781, 1069
BseYI CCCAGC 1 cut(s) 662
Bsh1236I CGCG 5 cut(s) 62, 140, 188, 426, 711
Bsh1285I CGRYCG 1 cut(s) 495
BshFI GGCC 3 cut(s) 230, 494, 816
BshNI GGYRCC 2 cut(s) 434, 713
BsiEI CGRYCG 1 cut(s) 495
BsiHKAI GWGCWC 4 cut(s) 204, 502, 514, 537
BsiHKCI CYCGRG 1 cut(s) 335
BsiSI CCGG 6 cut(s) 110, 325, 355, 362, 446, 495
BslFI GGGAC 2 cut(s) 715, 1011
BslI CCNNNNNNNGG 4 cut(s) 139, 262, 361, 698
BsmAI GTCTC 5 cut(s) 356, 548, 757, 874, 1075
BsmFI GGGAC 2 cut(s) 715, 1011
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 3 cut(s) 230, 494, 816
Bso31I GGTCTC 2 cut(s) 356, 1075
BsoBI CYCGRG 1 cut(s) 335
Bsp1286I GDGCHC 5 cut(s) 204, 342, 502, 514, 537
BspANI GGCC 3 cut(s) 230, 494, 816
BspCNI CTCAG 2 cut(s) 558, 623
BspFNI CGCG 5 cut(s) 62, 140, 188, 426, 711
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 6 cut(s) 126, 267, 381, 436, 715, 934
BspMAI CTGCAG 1 cut(s) 1037
BspMI ACCTGC 1 cut(s) 725
BspPI GGATC 9 cut(s) 12, 80, 119, 132, 379, 478, 578, 912, 986
BspT107I GGYRCC 2 cut(s) 434, 713
BspTNI GGTCTC 2 cut(s) 356, 1075
BsrFI RCCGGY 1 cut(s) 445
BsrI ACTGG 4 cut(s) 425, 507, 703, 980
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 4 cut(s) 256, 280, 312, 457
BssNI GRCGYC 2 cut(s) 219, 369
BssSI CACGAG 1 cut(s) 536
BssT1I CCWWGG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 536
Bst2UI CCWGG 3 cut(s) 194, 257, 458
Bst4CI ACNGT 5 cut(s) 80, 284, 569, 751, 1078
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 2 cut(s) 219, 369
BstBAI YACGTR 1 cut(s) 859
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 545, 610
BstDSI CCRYGG 1 cut(s) 280
BstF5I GGATG 1 cut(s) 93
BstFNI CGCG 5 cut(s) 62, 140, 188, 426, 711
BstHHI GCGC 2 cut(s) 426, 890
BstMAI GTCTC 5 cut(s) 356, 548, 757, 874, 1075
BstMCI CGRYCG 1 cut(s) 495
BstMWI GCNNNNNNNGC 6 cut(s) 65, 81, 377, 497, 659, 717
BstNI CCWGG 3 cut(s) 194, 257, 458
BstSCI CCNGG 3 cut(s) 192, 255, 456
BstSFI CTRYAG 3 cut(s) 208, 616, 1033
BstUI CGCG 5 cut(s) 62, 140, 188, 426, 711
BstV1I GCAGC 4 cut(s) 43, 568, 781, 1069
BstV2I GAAGAC 1 cut(s) 214
BstX2I RGATCY 2 cut(s) 124, 1029
BstYI RGATCY 2 cut(s) 124, 1029
BstZI CGGCCG 1 cut(s) 492
BsuRI GGCC 3 cut(s) 230, 494, 816
BtgI CCRYGG 1 cut(s) 280
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 3 cut(s) 500, 696, 769
BveI ACCTGC 1 cut(s) 725
Cac8I GCNNGC 1 cut(s) 190
CaiI CAGNNNCTG 1 cut(s) 262
CciI TCATGA 1 cut(s) 574
CfoI GCGC 2 cut(s) 426, 890
Cfr10I RCCGGY 1 cut(s) 445
Cfr13I GGNCC 4 cut(s) 265, 454, 805, 815
CseI GACGC 3 cut(s) 51, 208, 377
Csp6I GTAC 2 cut(s) 649, 714
CviAII CATG 8 cut(s) 474, 575, 603, 847, 873, 993, 1066, 1095
CviQI GTAC 2 cut(s) 649, 714
DdeI CTNAG 2 cut(s) 545, 610
DraIII CACNNNGTG 1 cut(s) 913
EaeI YGGCCR 1 cut(s) 492
EagI CGGCCG 1 cut(s) 492
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 3 cut(s) 55, 131, 227
Ecl136II GAGCTC 2 cut(s) 512, 535
EclXI CGGCCG 1 cut(s) 492
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 3 cut(s) 342, 514, 537
Eco31I GGTCTC 2 cut(s) 356, 1075
Eco47I GGWCC 3 cut(s) 265, 454, 805
Eco52I CGGCCG 1 cut(s) 492
Eco53kI GAGCTC 2 cut(s) 512, 535
Eco57I CTGAAG 1 cut(s) 745
Eco88I CYCGRG 1 cut(s) 335
EcoICRI GAGCTC 2 cut(s) 512, 535
EcoRI GAATTC 1 cut(s) 988
EcoRII CCWGG 3 cut(s) 192, 255, 456
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 3 cut(s) 342, 514, 537
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 8 cut(s) 477, 578, 606, 850, 876, 996, 1069, 1098
FaqI GGGAC 2 cut(s) 715, 1011
FatI CATG 8 cut(s) 473, 574, 602, 846, 872, 992, 1065, 1094
FbaI TGATCA 1 cut(s) 571
Fnu4HI GCNGC 6 cut(s) 57, 60, 492, 557, 795, 1083
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 3 cut(s) 342, 514, 537
Fsp4HI GCNGC 6 cut(s) 57, 60, 492, 557, 795, 1083
FspI TGCGCA 1 cut(s) 889
GlaI GCGC 2 cut(s) 425, 889
GluI GCNGC 6 cut(s) 57, 60, 492, 557, 795, 1083
GsaI CCCAGC 1 cut(s) 666
HaeIII GGCC 3 cut(s) 230, 494, 816
HapII CCGG 6 cut(s) 110, 325, 355, 362, 446, 495
HgaI GACGC 3 cut(s) 51, 208, 377
HhaI GCGC 2 cut(s) 426, 890
Hin1I GRCGYC 2 cut(s) 219, 369
Hin1II CATG 8 cut(s) 477, 578, 606, 850, 876, 996, 1069, 1098
Hin6I GCGC 2 cut(s) 424, 888
HinP1I GCGC 2 cut(s) 424, 888
HinfI GANTC 3 cut(s) 541, 608, 867
HpaII CCGG 6 cut(s) 110, 325, 355, 362, 446, 495
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 4 cut(s) 280, 565, 626, 808
Hpy188I TCNGA 6 cut(s) 98, 176, 301, 384, 393, 951
Hpy188III TCNNGA 5 cut(s) 343, 538, 575, 587, 902
Hpy8I GTNNAC 4 cut(s) 280, 565, 626, 808
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 6 cut(s) 181, 340, 398, 500, 676, 1010
HpyCH4III ACNGT 5 cut(s) 80, 284, 569, 751, 1078
HpyCH4IV ACGT 2 cut(s) 858, 882
HpyCH4V TGCA 6 cut(s) 720, 797, 824, 850, 1035, 1090
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 81, 377, 497, 659, 717
HpyF3I CTNAG 2 cut(s) 545, 610
HpySE526I ACGT 2 cut(s) 858, 882
Hsp92I GRCGYC 2 cut(s) 219, 369
Hsp92II CATG 8 cut(s) 477, 578, 606, 850, 876, 996, 1069, 1098
HspAI GCGC 2 cut(s) 424, 888
KpnI GGTACC 1 cut(s) 717
Ksp22I TGATCA 1 cut(s) 571
LmnI GCTCC 9 cut(s) 142, 199, 385, 497, 509, 532, 673, 938, 952
Lsp1109I GCAGC 4 cut(s) 43, 568, 781, 1069
LweI GCATC 2 cut(s) 154, 840
MaeII ACGT 2 cut(s) 858, 882
MaeIII GTNAC 4 cut(s) 286, 439, 605, 926
MboII GAAGA 5 cut(s) 34, 214, 395, 602, 794
MfeI CAATTG 1 cut(s) 825
MflI RGATCY 2 cut(s) 124, 1029
MhlI GDGCHC 5 cut(s) 204, 342, 502, 514, 537
MluCI AATT 6 cut(s) 328, 722, 789, 799, 825, 988
MlyI GAGTC 3 cut(s) 550, 602, 876
MmeI TCCRAC 3 cut(s) 121, 416, 780
MslI CAYNNNNRTG 1 cut(s) 579
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 6 cut(s) 110, 325, 355, 362, 446, 495
MspR9I CCNGG 3 cut(s) 194, 257, 458
MunI CAATTG 1 cut(s) 825
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 3 cut(s) 194, 257, 458
MvnI CGCG 5 cut(s) 62, 140, 188, 426, 711
MwoI GCNNNNNNNGC 6 cut(s) 65, 81, 377, 497, 659, 717
NlaIII CATG 8 cut(s) 477, 578, 606, 850, 876, 996, 1069, 1098
NlaIV GGNNCC 6 cut(s) 126, 267, 381, 436, 715, 934
NmeAIII GCCGAG 1 cut(s) 266
NmuCI GTSAC 3 cut(s) 286, 439, 605
NsbI TGCGCA 1 cut(s) 889
PagI TCATGA 1 cut(s) 574
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PctI GAATGC 1 cut(s) 643
PflMI CCANNNNNTGG 1 cut(s) 262
PkrI GCNGC 6 cut(s) 58, 61, 493, 558, 796, 1084
PleI GAGTC 3 cut(s) 549, 602, 875
PpsI GAGTC 3 cut(s) 549, 602, 875
Ppu21I YACGTR 1 cut(s) 859
Psp124BI GAGCTC 2 cut(s) 514, 537
Psp6I CCWGG 3 cut(s) 192, 255, 456
PspFI CCCAGC 1 cut(s) 662
PspGI CCWGG 3 cut(s) 192, 255, 456
PspN4I GGNNCC 6 cut(s) 126, 267, 381, 436, 715, 934
PspPI GGNCC 4 cut(s) 265, 454, 805, 815
PstI CTGCAG 1 cut(s) 1037
PstNI CAGNNNCTG 1 cut(s) 262
PsuI RGATCY 2 cut(s) 124, 1029
RsaI GTAC 2 cut(s) 650, 715
RsaNI GTAC 2 cut(s) 649, 714
RseI CAYNNNNRTG 1 cut(s) 579
SacI GAGCTC 2 cut(s) 514, 537
SatI GCNGC 6 cut(s) 57, 60, 492, 557, 795, 1083
Sau96I GGNCC 4 cut(s) 265, 454, 805, 815
SchI GAGTC 3 cut(s) 550, 602, 876
ScrFI CCNGG 3 cut(s) 194, 257, 458
SduI GDGCHC 5 cut(s) 204, 342, 502, 514, 537
SfaNI GCATC 2 cut(s) 154, 840
SfcI CTRYAG 3 cut(s) 208, 616, 1033
SinI GGWCC 3 cut(s) 265, 454, 805
SmiMI CAYNNNNRTG 1 cut(s) 579
SmlI CTYRAG 2 cut(s) 341, 656
SmoI CTYRAG 2 cut(s) 341, 656
Sse9I AATT 6 cut(s) 328, 722, 789, 799, 825, 988
SstI GAGCTC 2 cut(s) 514, 537
StyD4I CCNGG 3 cut(s) 192, 255, 456
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 5 cut(s) 80, 284, 569, 751, 1078
TaiI ACGT 2 cut(s) 861, 885
TaqI TCGA 1 cut(s) 417
TasI AATT 6 cut(s) 328, 722, 789, 799, 825, 988
TauI GCSGC 2 cut(s) 62, 494
TscAI CASTG 3 cut(s) 507, 703, 769
TseFI GTSAC 3 cut(s) 286, 439, 605
TseI GCWGC 4 cut(s) 56, 556, 794, 1082
Tsp45I GTSAC 3 cut(s) 286, 439, 605
TspDTI ATGAA 4 cut(s) 82, 591, 835, 981
TspRI CASTG 3 cut(s) 507, 703, 769
Van91I CCANNNNNTGG 1 cut(s) 262
VpaK11BI GGWCC 3 cut(s) 265, 454, 805
XapI RAATTY 4 cut(s) 328, 722, 799, 988
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.