RchiOBHm_Chr6g0302031

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017078
Physical Location & Seq
Forward (+)
62214604 .. 62216970
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27130

Sequence Viewer

Length: 1164 bp
ATGTGTACGTTAGAACGAAGTTCCTTTCATCATTTCCTTTCCCACACTCCTAACTCGCTCGCTCCACCAATGGATCATCATCATCTCGCTCTCCTCTCTCTTTTTCTCTTCCTATCCTCCGCTGCCGCGTCCGCCGTAAGCGACGGTGGCGATCCTTTCATCCGACAAGTCGTGCCGGAGGCGGAGGAGGATCCACTCCTCCGCGCGGAGCATCACTTCTCAAACTTCAAAGCCACCTTCCGAAAGACCTACGCGAGCCAGGAGGAGCACGACTACAGGTTCGGCGTCTTCAAGGCCAACCTCCGCCGAGCCAAAATACACCAGGGGCTGGACCCCACCGCCGTCCACGGTGTCACCAAGTTCTCCGATCTCACTCCCAAGGAGTTTCGCCGGAATTTTCTCGGGCTCAAGAAGGGTCTCCGGCTACCGGAGGACGCCCACACGGCTCCGATCCTTCCGACCAATGATCTTCCCACCGACTTCGACTGGCGCGAGAAAGGTGCCGTCACGCCGGTCAAGGACCAGGGTTCGTGTGGATCATGCTGGTCGTTTAGTGCGGCCGGAGCACTGGAAGGAGCTCATTATTTGGCAACAGGGGAGCTCGTGAGTCTCAGCAGTCAGCAGCTTGTGGACTGTGATCATGAGTGTGATCCAGAAGAATATGGTTCATGTGACTCGGGCTGTAGTGGTGGACTGATGACCAATGCCTTTGAGTACGCACTCAAGGCTGGGGGTTTGGAGCAAGAGAAGGACTACCCTTACACTGGGACTGATCGCGGTACCTGCAAATTTGACAAGAGCAAAGTTGTCGCTACTGTCTCCAACTTCAGTGTTGTTTCCCTTGACGAAGATCAAATTGCTGCAAATTTGGTCCACAATGGCCCTCTTGCAATTGGCATCAATGCGGTGTTCATGCAAACATACGTGGGGGGAGTCTCGTGCCCTTACATCTGCGCAAAACATCGTCTGGATCACGGGGTGCTTCTGGTGGGTTACGGCTCCTCTGGGTTTGCTCCGATACGCTTCAAGGAGAAGCCTTACTGGATCATAAAGAATTCATGGGGACAGAGTTGGGGAGAGGAAGGGTATTACAAGATCTGCAGGGGTCATAATGTTTGTGGGGTGGATAGCATGGTCTCTACCGTTGCTGCTATGCACGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

387

Amino Acids

42.4

Weight (kDa)

6.0

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 73 - 129 3.1e-14 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 157 - 381 1.8e-75 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16190
fragaria_vesca FvH4_2g38940
malus_domestica MD08G1021600.v1.1 MD15G1019300.v1.1
prunus_persica Prupe.1G371600_v2.0.a1
pyrus_communis pycom08g01710
rosa_chinensis RchiOBHm_Chr6g0302031
rosa_laevigata RLG00000011201
rosa_roxburghii Rroxscaffold_7G00166170
rosa_rugosa Rorug06G0311100
rosa_samantha Rh6BG478400 Rh6DG424000
rosa_wichuraiana Rw6G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 955
Acc36I ACCTGC 1 cut(s) 791
Acc65I GGTACC 1 cut(s) 779
AccB1I GGYRCC 2 cut(s) 500, 779
AccB7I CCANNNNNTGG 1 cut(s) 328
AccII CGCG 6 cut(s) 128, 204, 206, 254, 492, 777
AclWI GGATC 9 cut(s) 81, 146, 185, 198, 445, 544, 644, 978, 1052
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 4 cut(s) 394, 788, 865, 1054
AcuI CTGAAG 1 cut(s) 811
AcyI GRCGYC 2 cut(s) 285, 435
AdeI CACNNNGTG 1 cut(s) 979
AfaI GTAC 3 cut(s) 7, 716, 781
AfiI CCNNNNNNNGG 4 cut(s) 205, 328, 427, 764
AgsI TTSAA 3 cut(s) 229, 292, 1027
AjnI CCWGG 3 cut(s) 258, 321, 522
AluBI AGCT 3 cut(s) 578, 601, 625
AluI AGCT 3 cut(s) 578, 601, 625
Alw21I GWGCWC 4 cut(s) 270, 568, 580, 603
Alw26I GTCTC 5 cut(s) 422, 614, 823, 940, 1141
AlwI GGATC 9 cut(s) 81, 146, 185, 198, 445, 544, 644, 978, 1052
AlwNI CAGNNNCTG 1 cut(s) 328
Ama87I CYCGRG 2 cut(s) 401, 676
AoxI GGCC 3 cut(s) 294, 558, 880
ApeKI GCWGC 4 cut(s) 122, 622, 860, 1148
ApoI RAATTY 4 cut(s) 394, 788, 865, 1054
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
Asp718I GGTACC 1 cut(s) 779
AspLEI GCGC 3 cut(s) 206, 492, 956
AspS9I GGNCC 4 cut(s) 331, 520, 871, 881
AsuHPI GGTGA 1 cut(s) 346
AvaI CYCGRG 2 cut(s) 401, 676
AvaII GGWCC 3 cut(s) 331, 520, 871
BaeGI GKGCMC 1 cut(s) 944
BamHI GGATCC 1 cut(s) 190
BanI GGYRCC 2 cut(s) 500, 779
BanII GRGCYC 3 cut(s) 408, 580, 603
BauI CACGAG 2 cut(s) 602, 937
BbsI GAAGAC 1 cut(s) 280
Bbv12I GWGCWC 4 cut(s) 270, 568, 580, 603
BbvI GCAGC 4 cut(s) 109, 634, 847, 1135
BceAI ACGGC 5 cut(s) 119, 326, 459, 488, 1012
BcgI CGANNNNNNTGC 4 cut(s) 482, 516, 790, 824
BciT130I CCWGG 3 cut(s) 260, 323, 524
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 5 cut(s) 422, 614, 823, 940, 1141
BfmI CTRYAG 3 cut(s) 274, 682, 1099
BfuAI ACCTGC 1 cut(s) 791
BglI GCCNNNNNGGC 1 cut(s) 443
BglII AGATCT 1 cut(s) 1095
BisI GCNGC 6 cut(s) 123, 126, 558, 623, 861, 1149
BlsI GCNGC 6 cut(s) 124, 127, 559, 624, 862, 1150
Bme1390I CCNGG 3 cut(s) 260, 323, 524
Bme18I GGWCC 3 cut(s) 331, 520, 871
BmeT110I CYCGRG 2 cut(s) 401, 676
BmgT120I GGNCC 4 cut(s) 331, 520, 871, 881
BmiI GGNNCC 6 cut(s) 192, 333, 447, 502, 781, 1000
BmrFI CCNGG 3 cut(s) 260, 323, 524
BmrI ACTGGG 1 cut(s) 774
BmsI GCATC 2 cut(s) 220, 906
BmuI ACTGGG 1 cut(s) 774
BpiI GAAGAC 1 cut(s) 280
BpuEI CTTGAG 2 cut(s) 392, 707
BsaAI YACGTR 1 cut(s) 925
BsaBI GATNNNNATC 1 cut(s) 78
BsaHI GRCGYC 2 cut(s) 285, 435
BsaI GGTCTC 2 cut(s) 422, 1141
BsaJI CCNNGG 4 cut(s) 322, 346, 378, 523
BsaWI WCCGGW 1 cut(s) 427
Bsc4I CCNNNNNNNGG 4 cut(s) 205, 328, 427, 764
Bse118I RCCGGY 1 cut(s) 511
Bse1I ACTGG 4 cut(s) 491, 573, 769, 1046
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 3 cut(s) 260, 323, 524
BseDI CCNNGG 4 cut(s) 322, 346, 378, 523
BseGI GGATG 1 cut(s) 159
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 4 cut(s) 205, 328, 427, 764
BseMII CTCAG 1 cut(s) 625
BseNI ACTGG 4 cut(s) 491, 573, 769, 1046
BseRI GAGGAG 5 cut(s) 83, 188, 200, 278, 991
BseSI GKGCMC 1 cut(s) 944
BseX3I CGGCCG 1 cut(s) 558
BseXI GCAGC 4 cut(s) 109, 634, 847, 1135
BseYI CCCAGC 1 cut(s) 728
Bsh1236I CGCG 6 cut(s) 128, 204, 206, 254, 492, 777
Bsh1285I CGRYCG 1 cut(s) 561
BshFI GGCC 3 cut(s) 296, 560, 882
BshNI GGYRCC 2 cut(s) 500, 779
BsiEI CGRYCG 1 cut(s) 561
BsiHKAI GWGCWC 4 cut(s) 270, 568, 580, 603
BsiHKCI CYCGRG 2 cut(s) 401, 676
BsiSI CCGG 6 cut(s) 176, 391, 421, 428, 512, 561
BslFI GGGAC 2 cut(s) 781, 1077
BslI CCNNNNNNNGG 4 cut(s) 205, 328, 427, 764
BsmAI GTCTC 5 cut(s) 422, 614, 823, 940, 1141
BsmFI GGGAC 2 cut(s) 781, 1077
BsnI GGCC 3 cut(s) 296, 560, 882
Bso31I GGTCTC 2 cut(s) 422, 1141
BsoBI CYCGRG 2 cut(s) 401, 676
Bsp1286I GDGCHC 6 cut(s) 270, 408, 568, 580, 603, 944
BspANI GGCC 3 cut(s) 296, 560, 882
BspCNI CTCAG 1 cut(s) 624
BspFNI CGCG 6 cut(s) 128, 204, 206, 254, 492, 777
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 6 cut(s) 192, 333, 447, 502, 781, 1000
BspMAI CTGCAG 1 cut(s) 1103
BspMI ACCTGC 1 cut(s) 791
BspPI GGATC 9 cut(s) 81, 146, 185, 198, 445, 544, 644, 978, 1052
BspT107I GGYRCC 2 cut(s) 500, 779
BspTNI GGTCTC 2 cut(s) 422, 1141
BsrFI RCCGGY 1 cut(s) 511
BsrI ACTGG 4 cut(s) 491, 573, 769, 1046
BssAI RCCGGY 1 cut(s) 511
BssECI CCNNGG 4 cut(s) 322, 346, 378, 523
BssNI GRCGYC 2 cut(s) 285, 435
BssSI CACGAG 2 cut(s) 602, 937
BssT1I CCWWGG 1 cut(s) 378
Bst2BI CACGAG 2 cut(s) 602, 937
Bst2UI CCWGG 3 cut(s) 260, 323, 524
Bst4CI ACNGT 5 cut(s) 146, 350, 635, 817, 1144
Bst6I CTCTTC 1 cut(s) 113
BstACI GRCGYC 2 cut(s) 285, 435
BstBAI YACGTR 1 cut(s) 925
BstC8I GCNNGC 3 cut(s) 60, 256, 1158
BstDEI CTNAG 1 cut(s) 611
BstDSI CCRYGG 1 cut(s) 346
BstF5I GGATG 1 cut(s) 159
BstFNI CGCG 6 cut(s) 128, 204, 206, 254, 492, 777
BstHHI GCGC 3 cut(s) 206, 492, 956
BstMAI GTCTC 5 cut(s) 422, 614, 823, 940, 1141
BstMCI CGRYCG 1 cut(s) 561
BstMWI GCNNNNNNNGC 7 cut(s) 131, 147, 443, 563, 725, 783, 1157
BstNI CCWGG 3 cut(s) 260, 323, 524
BstSCI CCNGG 3 cut(s) 258, 321, 522
BstSFI CTRYAG 3 cut(s) 274, 682, 1099
BstSLI GKGCMC 1 cut(s) 944
BstUI CGCG 6 cut(s) 128, 204, 206, 254, 492, 777
BstV1I GCAGC 4 cut(s) 109, 634, 847, 1135
BstV2I GAAGAC 1 cut(s) 280
BstX2I RGATCY 2 cut(s) 190, 1095
BstYI RGATCY 2 cut(s) 190, 1095
BstZI CGGCCG 1 cut(s) 558
BsuRI GGCC 3 cut(s) 296, 560, 882
BtgI CCRYGG 1 cut(s) 346
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 3 cut(s) 566, 762, 835
BveI ACCTGC 1 cut(s) 791
Cac8I GCNNGC 3 cut(s) 60, 256, 1158
CaiI CAGNNNCTG 1 cut(s) 328
CciI TCATGA 1 cut(s) 640
CfoI GCGC 3 cut(s) 206, 492, 956
Cfr10I RCCGGY 1 cut(s) 511
Cfr13I GGNCC 4 cut(s) 331, 520, 871, 881
CseI GACGC 3 cut(s) 117, 274, 443
Csp6I GTAC 3 cut(s) 6, 715, 780
CviAII CATG 7 cut(s) 540, 641, 669, 913, 1059, 1132, 1161
CviQI GTAC 3 cut(s) 6, 715, 780
DdeI CTNAG 1 cut(s) 611
DraIII CACNNNGTG 1 cut(s) 979
EaeI YGGCCR 1 cut(s) 558
EagI CGGCCG 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EciI GGCGGA 3 cut(s) 121, 197, 293
Ecl136II GAGCTC 2 cut(s) 578, 601
EclXI CGGCCG 1 cut(s) 558
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 3 cut(s) 408, 580, 603
Eco31I GGTCTC 2 cut(s) 422, 1141
Eco47I GGWCC 3 cut(s) 331, 520, 871
Eco52I CGGCCG 1 cut(s) 558
Eco53kI GAGCTC 2 cut(s) 578, 601
Eco57I CTGAAG 1 cut(s) 811
Eco88I CYCGRG 2 cut(s) 401, 676
EcoICRI GAGCTC 2 cut(s) 578, 601
EcoRI GAATTC 1 cut(s) 1054
EcoRII CCWGG 3 cut(s) 258, 321, 522
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 3 cut(s) 408, 580, 603
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 7 cut(s) 543, 644, 672, 916, 1062, 1135, 1164
FaqI GGGAC 2 cut(s) 781, 1077
FatI CATG 7 cut(s) 539, 640, 668, 912, 1058, 1131, 1160
FbaI TGATCA 1 cut(s) 637
Fnu4HI GCNGC 6 cut(s) 123, 126, 558, 623, 861, 1149
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 3 cut(s) 408, 580, 603
Fsp4HI GCNGC 6 cut(s) 123, 126, 558, 623, 861, 1149
FspI TGCGCA 1 cut(s) 955
GlaI GCGC 3 cut(s) 205, 491, 955
GluI GCNGC 6 cut(s) 123, 126, 558, 623, 861, 1149
GsaI CCCAGC 1 cut(s) 732
HaeIII GGCC 3 cut(s) 296, 560, 882
HapII CCGG 6 cut(s) 176, 391, 421, 428, 512, 561
HgaI GACGC 3 cut(s) 117, 274, 443
HhaI GCGC 3 cut(s) 206, 492, 956
Hin1I GRCGYC 2 cut(s) 285, 435
Hin1II CATG 7 cut(s) 543, 644, 672, 916, 1062, 1135, 1164
Hin6I GCGC 3 cut(s) 204, 490, 954
HinP1I GCGC 3 cut(s) 204, 490, 954
HinfI GANTC 3 cut(s) 607, 674, 933
HpaII CCGG 6 cut(s) 176, 391, 421, 428, 512, 561
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 5 cut(s) 6, 346, 631, 692, 874
Hpy188I TCNGA 6 cut(s) 164, 242, 367, 450, 459, 1017
Hpy188III TCNNGA 5 cut(s) 409, 604, 641, 653, 968
Hpy8I GTNNAC 5 cut(s) 6, 346, 631, 692, 874
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 6 cut(s) 247, 406, 464, 566, 742, 1076
HpyCH4III ACNGT 5 cut(s) 146, 350, 635, 817, 1144
HpyCH4IV ACGT 2 cut(s) 8, 924
HpyCH4V TGCA 6 cut(s) 786, 863, 890, 916, 1101, 1156
HpyF10VI GCNNNNNNNGC 7 cut(s) 131, 147, 443, 563, 725, 783, 1157
HpyF3I CTNAG 1 cut(s) 611
HpySE526I ACGT 2 cut(s) 8, 924
Hsp92I GRCGYC 2 cut(s) 285, 435
Hsp92II CATG 7 cut(s) 543, 644, 672, 916, 1062, 1135, 1164
HspAI GCGC 3 cut(s) 204, 490, 954
KpnI GGTACC 1 cut(s) 783
Ksp22I TGATCA 1 cut(s) 637
Lsp1109I GCAGC 4 cut(s) 109, 634, 847, 1135
LweI GCATC 2 cut(s) 220, 906
MaeII ACGT 2 cut(s) 8, 924
MaeIII GTNAC 4 cut(s) 352, 505, 671, 992
MboII GAAGA 5 cut(s) 100, 280, 461, 668, 860
MfeI CAATTG 1 cut(s) 891
MflI RGATCY 2 cut(s) 190, 1095
MhlI GDGCHC 6 cut(s) 270, 408, 568, 580, 603, 944
MluCI AATT 6 cut(s) 394, 788, 855, 865, 891, 1054
MlyI GAGTC 3 cut(s) 616, 668, 942
MmeI TCCRAC 3 cut(s) 187, 482, 846
MslI CAYNNNNRTG 1 cut(s) 645
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 6 cut(s) 176, 391, 421, 428, 512, 561
MspR9I CCNGG 3 cut(s) 260, 323, 524
MunI CAATTG 1 cut(s) 891
MvaI CCWGG 3 cut(s) 260, 323, 524
MvnI CGCG 6 cut(s) 128, 204, 206, 254, 492, 777
MwoI GCNNNNNNNGC 7 cut(s) 131, 147, 443, 563, 725, 783, 1157
NlaIII CATG 7 cut(s) 543, 644, 672, 916, 1062, 1135, 1164
NlaIV GGNNCC 6 cut(s) 192, 333, 447, 502, 781, 1000
NmeAIII GCCGAG 1 cut(s) 332
NmuCI GTSAC 3 cut(s) 352, 505, 671
NsbI TGCGCA 1 cut(s) 955
PagI TCATGA 1 cut(s) 640
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PflMI CCANNNNNTGG 1 cut(s) 328
PkrI GCNGC 6 cut(s) 124, 127, 559, 624, 862, 1150
PleI GAGTC 3 cut(s) 615, 668, 941
PpsI GAGTC 3 cut(s) 615, 668, 941
Ppu21I YACGTR 1 cut(s) 925
Psp124BI GAGCTC 2 cut(s) 580, 603
Psp6I CCWGG 3 cut(s) 258, 321, 522
PspFI CCCAGC 1 cut(s) 728
PspGI CCWGG 3 cut(s) 258, 321, 522
PspN4I GGNNCC 6 cut(s) 192, 333, 447, 502, 781, 1000
PspPI GGNCC 4 cut(s) 331, 520, 871, 881
PstI CTGCAG 1 cut(s) 1103
PstNI CAGNNNCTG 1 cut(s) 328
PsuI RGATCY 2 cut(s) 190, 1095
RsaI GTAC 3 cut(s) 7, 716, 781
RsaNI GTAC 3 cut(s) 6, 715, 780
RseI CAYNNNNRTG 1 cut(s) 645
SacI GAGCTC 2 cut(s) 580, 603
SatI GCNGC 6 cut(s) 123, 126, 558, 623, 861, 1149
Sau96I GGNCC 4 cut(s) 331, 520, 871, 881
SchI GAGTC 3 cut(s) 616, 668, 942
ScrFI CCNGG 3 cut(s) 260, 323, 524
SduI GDGCHC 6 cut(s) 270, 408, 568, 580, 603, 944
SfaNI GCATC 2 cut(s) 220, 906
SfcI CTRYAG 3 cut(s) 274, 682, 1099
SinI GGWCC 3 cut(s) 331, 520, 871
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 2 cut(s) 407, 722
SmoI CTYRAG 2 cut(s) 407, 722
Sse9I AATT 6 cut(s) 394, 788, 855, 865, 891, 1054
SstI GAGCTC 2 cut(s) 580, 603
StyD4I CCNGG 3 cut(s) 258, 321, 522
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 5 cut(s) 146, 350, 635, 817, 1144
TaiI ACGT 2 cut(s) 11, 927
TaqI TCGA 1 cut(s) 483
TasI AATT 6 cut(s) 394, 788, 855, 865, 891, 1054
TauI GCSGC 2 cut(s) 128, 560
TscAI CASTG 3 cut(s) 573, 769, 835
TseFI GTSAC 3 cut(s) 352, 505, 671
TseI GCWGC 4 cut(s) 122, 622, 860, 1148
Tsp45I GTSAC 3 cut(s) 352, 505, 671
TspDTI ATGAA 5 cut(s) 17, 148, 657, 901, 1047
TspRI CASTG 3 cut(s) 573, 769, 835
Van91I CCANNNNNTGG 1 cut(s) 328
VpaK11BI GGWCC 3 cut(s) 331, 520, 871
XapI RAATTY 4 cut(s) 394, 788, 865, 1054
XcmI CCANNNNNNNNNTGG 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.