Protein TIC 55, chloroplastic-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G24820 |
| fragaria_vesca | FvH4_2g41330 |
| malus_domestica | MD08G1051400.v1.1 |
| prunus_persica | Prupe.1G397100_v2.0.a1 Prupe.1G397200_v2.0.a1 Prupe.1G397200_v2.0.a1 Prupe.1G397200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0299151 |
| rosa_laevigata | RLG00000011459 RLG00000028023 |
| rosa_multiflora | Rmu_sc0001434.1_g000017 |
| rosa_roxburghii | Rroxscaffold_4G00298790 Rroxscaffold_7G00168970 |
| rosa_rugosa | Rorug06G0285700 Rorug06G0285800 |
| rosa_samantha | Rh6AG396700 Rh6BG405200 Rh6CG411200 Rh6DG397900 |
| rosa_wichuraiana | Rw6G034730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 914 |
| Acc65I | GGTACC | 1 cut(s) | 363 |
| AccB1I | GGYRCC | 1 cut(s) | 363 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 496 |
| AccBSI | CCGCTC | 1 cut(s) | 328 |
| AccIII | TCCGGA | 1 cut(s) | 391 |
| AciI | CCGC | 2 cut(s) | 328, 881 |
| AclWI | GGATC | 7 cut(s) | 285, 583, 809, 822, 941, 1437, 1450 |
| AcoI | YGGCCR | 2 cut(s) | 740, 1464 |
| AcsI | RAATTY | 1 cut(s) | 615 |
| AcuI | CTGAAG | 1 cut(s) | 1251 |
| AcvI | CACGTG | 1 cut(s) | 1486 |
| AfaI | GTAC | 6 cut(s) | 365, 374, 443, 1215, 1233, 1250 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 382, 496, 1430, 1644 |
| AflII | CTTAAG | 1 cut(s) | 967 |
| AflIII | ACRYGT | 1 cut(s) | 1483 |
| AgeI | ACCGGT | 1 cut(s) | 1470 |
| AgsI | TTSAA | 8 cut(s) | 566, 637, 711, 752, 977, 995, 1261, 1678 |
| AjiI | CACGTC | 1 cut(s) | 84 |
| AjnI | CCWGG | 2 cut(s) | 381, 742 |
| AluBI | AGCT | 8 cut(s) | 196, 463, 598, 605, 629, 775, 963, 1523 |
| AluI | AGCT | 8 cut(s) | 196, 463, 598, 605, 629, 775, 963, 1523 |
| Alw21I | GWGCWC | 2 cut(s) | 465, 777 |
| Alw26I | GTCTC | 5 cut(s) | 90, 163, 690, 1122, 1594 |
| AlwI | GGATC | 7 cut(s) | 285, 583, 809, 822, 941, 1437, 1450 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 883 |
| Aor13HI | TCCGGA | 1 cut(s) | 391 |
| AoxI | GGCC | 6 cut(s) | 514, 740, 1061, 1464, 1542, 1608 |
| ApeKI | GCWGC | 6 cut(s) | 193, 483, 883, 906, 1628, 1664 |
| ApoI | RAATTY | 1 cut(s) | 615 |
| AsiGI | ACCGGT | 1 cut(s) | 1470 |
| Asp718I | GGTACC | 1 cut(s) | 363 |
| AspLEI | GCGC | 3 cut(s) | 888, 906, 1387 |
| AspS9I | GGNCC | 4 cut(s) | 296, 1543, 1609, 1698 |
| AsuC2I | CCSGG | 1 cut(s) | 1645 |
| AsuHPI | GGTGA | 3 cut(s) | 370, 661, 889 |
| AvaII | GGWCC | 2 cut(s) | 296, 1698 |
| BaeGI | GKGCMC | 1 cut(s) | 1341 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 707, 740, 1263, 1296 |
| BalI | TGGCCA | 1 cut(s) | 1466 |
| BamHI | GGATCC | 2 cut(s) | 814, 1442 |
| BanI | GGYRCC | 1 cut(s) | 363 |
| BanII | GRGCYC | 2 cut(s) | 465, 777 |
| BbrPI | CACGTG | 1 cut(s) | 1486 |
| BbsI | GAAGAC | 2 cut(s) | 538, 644 |
| Bbv12I | GWGCWC | 2 cut(s) | 465, 777 |
| BbvCI | CCTCAGC | 2 cut(s) | 594, 1639 |
| BbvI | GCAGC | 6 cut(s) | 205, 470, 870, 918, 1640, 1651 |
| BccI | CCATC | 7 cut(s) | 212, 521, 549, 958, 1016, 1290, 1294 |
| BceAI | ACGGC | 1 cut(s) | 466 |
| BciT130I | CCWGG | 2 cut(s) | 383, 744 |
| BcnI | CCSGG | 1 cut(s) | 1645 |
| BcoDI | GTCTC | 5 cut(s) | 90, 163, 690, 1122, 1594 |
| BfaI | CTAG | 2 cut(s) | 536, 1586 |
| BfmI | CTRYAG | 3 cut(s) | 1057, 1504, 1626 |
| BfrI | CTTAAG | 1 cut(s) | 967 |
| BfuAI | ACCTGC | 1 cut(s) | 914 |
| BisI | GCNGC | 7 cut(s) | 194, 484, 881, 884, 907, 1629, 1665 |
| BlpI | GCTNAGC | 2 cut(s) | 197, 876 |
| BlsI | GCNGC | 7 cut(s) | 195, 485, 882, 885, 908, 1630, 1666 |
| Bme1390I | CCNGG | 3 cut(s) | 383, 744, 1645 |
| Bme18I | GGWCC | 2 cut(s) | 296, 1698 |
| BmgBI | CACGTC | 1 cut(s) | 84 |
| BmgT120I | GGNCC | 4 cut(s) | 296, 1543, 1609, 1698 |
| BmiI | GGNNCC | 6 cut(s) | 297, 298, 365, 816, 1444, 1700 |
| BmrFI | CCNGG | 3 cut(s) | 383, 744, 1645 |
| BmsI | GCATC | 5 cut(s) | 598, 862, 1311, 1424, 1574 |
| BpiI | GAAGAC | 2 cut(s) | 538, 644 |
| BpmI | CTGGAG | 2 cut(s) | 449, 874 |
| Bpu10I | CCTNAGC | 2 cut(s) | 594, 1639 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 197, 876 |
| BpuMI | CCSGG | 1 cut(s) | 1645 |
| BsaAI | YACGTR | 1 cut(s) | 1486 |
| BsaBI | GATNNNNATC | 1 cut(s) | 258 |
| BsaI | GGTCTC | 2 cut(s) | 163, 1122 |
| BsaJI | CCNNGG | 5 cut(s) | 381, 571, 719, 743, 1644 |
| BsaWI | WCCGGW | 2 cut(s) | 391, 1470 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 315, 345 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 382, 496, 1430, 1644 |
| Bse118I | RCCGGY | 2 cut(s) | 1403, 1470 |
| Bse1I | ACTGG | 5 cut(s) | 466, 517, 857, 1072, 1128 |
| Bse3DI | GCAATG | 2 cut(s) | 1352, 1492 |
| Bse8I | GATNNNNATC | 1 cut(s) | 258 |
| BseAI | TCCGGA | 1 cut(s) | 391 |
| BseBI | CCWGG | 2 cut(s) | 383, 744 |
| BseDI | CCNNGG | 5 cut(s) | 381, 571, 719, 743, 1644 |
| BseGI | GGATG | 7 cut(s) | 61, 560, 687, 1027, 1305, 1326, 1415 |
| BseJI | GATNNNNATC | 1 cut(s) | 258 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 382, 496, 1430, 1644 |
| BseMI | GCAATG | 2 cut(s) | 1352, 1492 |
| BseMII | CTCAG | 6 cut(s) | 158, 608, 701, 890, 1605, 1653 |
| BseNI | ACTGG | 5 cut(s) | 466, 517, 857, 1072, 1128 |
| BseRI | GAGGAG | 5 cut(s) | 139, 281, 284, 287, 336 |
| BseSI | GKGCMC | 1 cut(s) | 1341 |
| BseXI | GCAGC | 6 cut(s) | 205, 470, 870, 918, 1640, 1651 |
| BsgI | GTGCAG | 1 cut(s) | 237 |
| BshFI | GGCC | 6 cut(s) | 516, 742, 1063, 1466, 1544, 1610 |
| BshNI | GGYRCC | 1 cut(s) | 363 |
| BshTI | ACCGGT | 1 cut(s) | 1470 |
| BsiHKAI | GWGCWC | 2 cut(s) | 465, 777 |
| BsiSI | CCGG | 4 cut(s) | 392, 1404, 1471, 1644 |
| BslFI | GGGAC | 2 cut(s) | 282, 668 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 382, 496, 1430, 1644 |
| BsmAI | GTCTC | 5 cut(s) | 90, 163, 690, 1122, 1594 |
| BsmBI | CGTCTC | 1 cut(s) | 90 |
| BsmFI | GGGAC | 2 cut(s) | 282, 668 |
| BsmI | GAATGC | 1 cut(s) | 1165 |
| BsnI | GGCC | 6 cut(s) | 516, 742, 1063, 1466, 1544, 1610 |
| Bso31I | GGTCTC | 2 cut(s) | 163, 1122 |
| Bsp1286I | GDGCHC | 3 cut(s) | 465, 777, 1341 |
| Bsp13I | TCCGGA | 1 cut(s) | 391 |
| Bsp1407I | TGTACA | 1 cut(s) | 441 |
| Bsp143I | GATC | 6 cut(s) | 277, 478, 588, 814, 946, 1442 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 197, 876 |
| BspACI | CCGC | 2 cut(s) | 328, 881 |
| BspANI | GGCC | 6 cut(s) | 516, 742, 1063, 1466, 1544, 1610 |
| BspCNI | CTCAG | 6 cut(s) | 159, 607, 700, 889, 1604, 1652 |
| BspEI | TCCGGA | 1 cut(s) | 391 |
| BspHI | TCATGA | 1 cut(s) | 1218 |
| BspLI | GGNNCC | 6 cut(s) | 297, 298, 365, 816, 1444, 1700 |
| BspMAI | CTGCAG | 2 cut(s) | 1508, 1630 |
| BspMI | ACCTGC | 1 cut(s) | 914 |
| BspPI | GGATC | 7 cut(s) | 285, 583, 809, 822, 941, 1437, 1450 |
| BspT107I | GGYRCC | 1 cut(s) | 363 |
| BspTI | CTTAAG | 1 cut(s) | 967 |
| BspTNI | GGTCTC | 2 cut(s) | 163, 1122 |
| BsrBI | CCGCTC | 1 cut(s) | 328 |
| BsrDI | GCAATG | 2 cut(s) | 1352, 1492 |
| BsrFI | RCCGGY | 2 cut(s) | 1403, 1470 |
| BsrGI | TGTACA | 1 cut(s) | 441 |
| BsrI | ACTGG | 5 cut(s) | 466, 517, 857, 1072, 1128 |
| BssAI | RCCGGY | 2 cut(s) | 1403, 1470 |
| BssECI | CCNNGG | 5 cut(s) | 381, 571, 719, 743, 1644 |
| BssMI | GATC | 6 cut(s) | 277, 478, 588, 814, 946, 1442 |
| BssT1I | CCWWGG | 2 cut(s) | 571, 719 |
| Bst2UI | CCWGG | 2 cut(s) | 383, 744 |
| Bst4CI | ACNGT | 1 cut(s) | 418 |
| Bst6I | CTCTTC | 2 cut(s) | 22, 996 |
| BstAFI | CTTAAG | 1 cut(s) | 967 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 436, 1321, 1503, 1571 |
| BstAUI | TGTACA | 1 cut(s) | 441 |
| BstBAI | YACGTR | 1 cut(s) | 1486 |
| BstC8I | GCNNGC | 6 cut(s) | 1165, 1368, 1389, 1425, 1452, 1657 |
| BstDEI | CTNAG | 7 cut(s) | 167, 197, 594, 687, 876, 1591, 1639 |
| BstEII | GGTNACC | 1 cut(s) | 895 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 380 |
| BstF5I | GGATG | 7 cut(s) | 61, 560, 687, 1027, 1305, 1326, 1415 |
| BstHHI | GCGC | 3 cut(s) | 888, 906, 1387 |
| BstKTI | GATC | 6 cut(s) | 280, 481, 591, 817, 949, 1445 |
| BstMAI | GTCTC | 5 cut(s) | 90, 163, 690, 1122, 1594 |
| BstMBI | GATC | 6 cut(s) | 277, 478, 588, 814, 946, 1442 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 436, 1321, 1363, 1503, 1529, 1550, 1571, 1661, 1670 |
| BstNI | CCWGG | 2 cut(s) | 383, 744 |
| BstNSI | RCATGY | 3 cut(s) | 1385, 1454, 1659 |
| BstPI | GGTNACC | 1 cut(s) | 895 |
| BstSCI | CCNGG | 3 cut(s) | 381, 742, 1643 |
| BstSFI | CTRYAG | 3 cut(s) | 1057, 1504, 1626 |
| BstSLI | GKGCMC | 1 cut(s) | 1341 |
| BstV1I | GCAGC | 6 cut(s) | 205, 470, 870, 918, 1640, 1651 |
| BstV2I | GAAGAC | 2 cut(s) | 538, 644 |
| BstX2I | RGATCY | 3 cut(s) | 588, 814, 1442 |
| BstYI | RGATCY | 3 cut(s) | 588, 814, 1442 |
| BsuRI | GGCC | 6 cut(s) | 516, 742, 1063, 1466, 1544, 1610 |
| BtrI | CACGTC | 1 cut(s) | 84 |
| BtsCI | GGATG | 7 cut(s) | 61, 560, 687, 1027, 1305, 1326, 1415 |
| BtsI | GCAGTG | 2 cut(s) | 460, 1607 |
| BtsIMutI | CAGTG | 4 cut(s) | 460, 473, 1121, 1607 |
| BveI | ACCTGC | 1 cut(s) | 914 |
| Cac8I | GCNNGC | 6 cut(s) | 1165, 1368, 1389, 1425, 1452, 1657 |
| CaiI | CAGNNNCTG | 1 cut(s) | 883 |
| CciI | TCATGA | 1 cut(s) | 1218 |
| CfoI | GCGC | 3 cut(s) | 888, 906, 1387 |
| Cfr10I | RCCGGY | 2 cut(s) | 1403, 1470 |
| Cfr13I | GGNCC | 4 cut(s) | 296, 1543, 1609, 1698 |
| CseI | GACGC | 1 cut(s) | 407 |
| Csp6I | GTAC | 6 cut(s) | 364, 373, 442, 1214, 1232, 1249 |
| CspAI | ACCGGT | 1 cut(s) | 1470 |
| CviQI | GTAC | 6 cut(s) | 364, 373, 442, 1214, 1232, 1249 |
| DdeI | CTNAG | 7 cut(s) | 167, 197, 594, 687, 876, 1591, 1639 |
| DpnI | GATC | 6 cut(s) | 279, 480, 590, 816, 948, 1444 |
| DpnII | GATC | 6 cut(s) | 277, 478, 588, 814, 946, 1442 |
| EaeI | YGGCCR | 2 cut(s) | 740, 1464 |
| Eam1104I | CTCTTC | 2 cut(s) | 22, 996 |
| EarI | CTCTTC | 2 cut(s) | 22, 996 |
| Ecl136II | GAGCTC | 2 cut(s) | 463, 775 |
| Eco130I | CCWWGG | 2 cut(s) | 571, 719 |
| Eco24I | GRGCYC | 2 cut(s) | 465, 777 |
| Eco31I | GGTCTC | 2 cut(s) | 163, 1122 |
| Eco47I | GGWCC | 2 cut(s) | 296, 1698 |
| Eco53kI | GAGCTC | 2 cut(s) | 463, 775 |
| Eco57I | CTGAAG | 1 cut(s) | 1251 |
| Eco72I | CACGTG | 1 cut(s) | 1486 |
| Eco91I | GGTNACC | 1 cut(s) | 895 |
| EcoICRI | GAGCTC | 2 cut(s) | 463, 775 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 380 |
| EcoO109I | RGGNCCY | 4 cut(s) | 296, 1543, 1609, 1698 |
| EcoO65I | GGTNACC | 1 cut(s) | 895 |
| EcoRII | CCWGG | 2 cut(s) | 381, 742 |
| EcoT14I | CCWWGG | 2 cut(s) | 571, 719 |
| EcoT22I | ATGCAT | 1 cut(s) | 1452 |
| EcoT38I | GRGCYC | 2 cut(s) | 465, 777 |
| ErhI | CCWWGG | 2 cut(s) | 571, 719 |
| Esp3I | CGTCTC | 1 cut(s) | 90 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1022, 1054 |
| FaqI | GGGAC | 2 cut(s) | 282, 668 |
| FauI | CCCGC | 1 cut(s) | 321 |
| FauNDI | CATATG | 1 cut(s) | 643 |
| Fnu4HI | GCNGC | 7 cut(s) | 194, 484, 881, 884, 907, 1629, 1665 |
| FokI | GGATG | 7 cut(s) | 48, 567, 694, 1034, 1312, 1333, 1402 |
| FriOI | GRGCYC | 2 cut(s) | 465, 777 |
| Fsp4HI | GCNGC | 7 cut(s) | 194, 484, 881, 884, 907, 1629, 1665 |
| FspBI | CTAG | 2 cut(s) | 536, 1586 |
| GlaI | GCGC | 3 cut(s) | 887, 905, 1386 |
| GluI | GCNGC | 7 cut(s) | 194, 484, 881, 884, 907, 1629, 1665 |
| GsuI | CTGGAG | 2 cut(s) | 449, 874 |
| HaeIII | GGCC | 6 cut(s) | 516, 742, 1063, 1466, 1544, 1610 |
| HapII | CCGG | 4 cut(s) | 392, 1404, 1471, 1644 |
| HgaI | GACGC | 1 cut(s) | 407 |
| HhaI | GCGC | 3 cut(s) | 888, 906, 1387 |
| Hin6I | GCGC | 3 cut(s) | 886, 904, 1385 |
| HinP1I | GCGC | 3 cut(s) | 886, 904, 1385 |
| HincII | GTYRAC | 1 cut(s) | 1015 |
| HindII | GTYRAC | 1 cut(s) | 1015 |
| HindIII | AAGCTT | 2 cut(s) | 961, 1521 |
| HinfI | GANTC | 3 cut(s) | 656, 805, 918 |
| HpaII | CCGG | 4 cut(s) | 392, 1404, 1471, 1644 |
| HphI | GGTGA | 3 cut(s) | 370, 661, 889 |
| Hpy166II | GTNNAC | 3 cut(s) | 340, 1015, 1651 |
| Hpy188I | TCNGA | 5 cut(s) | 168, 511, 690, 1158, 1270 |
| Hpy188III | TCNNGA | 5 cut(s) | 263, 392, 752, 1219, 1593 |
| Hpy8I | GTNNAC | 3 cut(s) | 340, 1015, 1651 |
| Hpy99I | CGWCG | 1 cut(s) | 401 |
| HpyAV | CCTTC | 4 cut(s) | 506, 717, 1590, 1600 |
| HpyCH4III | ACNGT | 1 cut(s) | 418 |
| HpyCH4IV | ACGT | 2 cut(s) | 83, 1485 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 436, 1321, 1363, 1503, 1529, 1550, 1571, 1661, 1670 |
| HpyF3I | CTNAG | 7 cut(s) | 167, 197, 594, 687, 876, 1591, 1639 |
| HpySE526I | ACGT | 2 cut(s) | 83, 1485 |
| HspAI | GCGC | 3 cut(s) | 886, 904, 1385 |
| KflI | GGGWCCC | 1 cut(s) | 296 |
| Kpn2I | TCCGGA | 1 cut(s) | 391 |
| KpnI | GGTACC | 1 cut(s) | 367 |
| Kzo9I | GATC | 6 cut(s) | 277, 478, 588, 814, 946, 1442 |
| LmnI | GCTCC | 4 cut(s) | 247, 468, 780, 1459 |
| Lsp1109I | GCAGC | 6 cut(s) | 205, 470, 870, 918, 1640, 1651 |
| LweI | GCATC | 5 cut(s) | 598, 862, 1311, 1424, 1574 |
| MaeI | CTAG | 2 cut(s) | 536, 1586 |
| MaeII | ACGT | 2 cut(s) | 83, 1485 |
| MaeIII | GTNAC | 1 cut(s) | 895 |
| MalI | GATC | 6 cut(s) | 279, 480, 590, 816, 948, 1444 |
| MbiI | CCGCTC | 1 cut(s) | 328 |
| MboI | GATC | 6 cut(s) | 277, 478, 588, 814, 946, 1442 |
| MboII | GAAGA | 6 cut(s) | 9, 543, 649, 881, 983, 1257 |
| MflI | RGATCY | 3 cut(s) | 588, 814, 1442 |
| MhlI | GDGCHC | 3 cut(s) | 465, 777, 1341 |
| MlsI | TGGCCA | 1 cut(s) | 1466 |
| MluCI | AATT | 8 cut(s) | 177, 560, 615, 1008, 1089, 1130, 1459, 1581 |
| MluNI | TGGCCA | 1 cut(s) | 1466 |
| MlyI | GAGTC | 1 cut(s) | 650 |
| MmeI | TCCRAC | 1 cut(s) | 206 |
| Mox20I | TGGCCA | 1 cut(s) | 1466 |
| Mph1103I | ATGCAT | 1 cut(s) | 1452 |
| MroI | TCCGGA | 1 cut(s) | 391 |
| MscI | TGGCCA | 1 cut(s) | 1466 |
| MseI | TTAA | 3 cut(s) | 176, 968, 1254 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1158 |
| Msp20I | TGGCCA | 1 cut(s) | 1466 |
| MspA1I | CMGCKG | 2 cut(s) | 605, 883 |
| MspCI | CTTAAG | 1 cut(s) | 967 |
| MspI | CCGG | 4 cut(s) | 392, 1404, 1471, 1644 |
| MspR9I | CCNGG | 3 cut(s) | 383, 744, 1645 |
| Mva1269I | GAATGC | 1 cut(s) | 1165 |
| MvaI | CCWGG | 2 cut(s) | 383, 744 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 436, 1321, 1363, 1503, 1529, 1550, 1571, 1661, 1670 |
| NciI | CCSGG | 1 cut(s) | 1645 |
| NdeI | CATATG | 1 cut(s) | 643 |
| NdeII | GATC | 6 cut(s) | 277, 478, 588, 814, 946, 1442 |
| NlaIV | GGNNCC | 6 cut(s) | 297, 298, 365, 816, 1444, 1700 |
| NmeAIII | GCCGAG | 2 cut(s) | 718, 1640 |
| NmuCI | GTSAC | 1 cut(s) | 895 |
| NsiI | ATGCAT | 1 cut(s) | 1452 |
| NspI | RCATGY | 3 cut(s) | 1385, 1454, 1659 |
| PaeI | GCATGC | 2 cut(s) | 1454, 1659 |
| PagI | TCATGA | 1 cut(s) | 1218 |
| PctI | GAATGC | 1 cut(s) | 1165 |
| PfeI | GAWTC | 2 cut(s) | 805, 918 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 496 |
| PinAI | ACCGGT | 1 cut(s) | 1470 |
| PkrI | GCNGC | 7 cut(s) | 195, 485, 882, 885, 908, 1630, 1666 |
| PleI | GAGTC | 1 cut(s) | 650 |
| PmaCI | CACGTG | 1 cut(s) | 1486 |
| PmlI | CACGTG | 1 cut(s) | 1486 |
| PpsI | GAGTC | 1 cut(s) | 650 |
| Ppu21I | YACGTR | 1 cut(s) | 1486 |
| PpuMI | RGGWCCY | 2 cut(s) | 296, 1698 |
| Psp124BI | GAGCTC | 2 cut(s) | 465, 777 |
| Psp5II | RGGWCCY | 2 cut(s) | 296, 1698 |
| Psp6I | CCWGG | 2 cut(s) | 381, 742 |
| PspCI | CACGTG | 1 cut(s) | 1486 |
| PspEI | GGTNACC | 1 cut(s) | 895 |
| PspGI | CCWGG | 2 cut(s) | 381, 742 |
| PspN4I | GGNNCC | 6 cut(s) | 297, 298, 365, 816, 1444, 1700 |
| PspPI | GGNCC | 4 cut(s) | 296, 1543, 1609, 1698 |
| PspPPI | RGGWCCY | 2 cut(s) | 296, 1698 |
| PstI | CTGCAG | 2 cut(s) | 1508, 1630 |
| PstNI | CAGNNNCTG | 1 cut(s) | 883 |
| PsuI | RGATCY | 3 cut(s) | 588, 814, 1442 |
| PvuII | CAGCTG | 1 cut(s) | 605 |
| RsaI | GTAC | 6 cut(s) | 365, 374, 443, 1215, 1233, 1250 |
| RsaNI | GTAC | 6 cut(s) | 364, 373, 442, 1214, 1232, 1249 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1158 |
| SacI | GAGCTC | 2 cut(s) | 465, 777 |
| SaqAI | TTAA | 3 cut(s) | 176, 968, 1254 |
| SatI | GCNGC | 7 cut(s) | 194, 484, 881, 884, 907, 1629, 1665 |
| Sau3AI | GATC | 6 cut(s) | 277, 478, 588, 814, 946, 1442 |
| Sau96I | GGNCC | 4 cut(s) | 296, 1543, 1609, 1698 |
| SchI | GAGTC | 1 cut(s) | 650 |
| ScrFI | CCNGG | 3 cut(s) | 383, 744, 1645 |
| SduI | GDGCHC | 3 cut(s) | 465, 777, 1341 |
| SfaNI | GCATC | 5 cut(s) | 598, 862, 1311, 1424, 1574 |
| SfcI | CTRYAG | 3 cut(s) | 1057, 1504, 1626 |
| SinI | GGWCC | 2 cut(s) | 296, 1698 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1158 |
| SmlI | CTYRAG | 1 cut(s) | 967 |
| SmoI | CTYRAG | 1 cut(s) | 967 |
| SphI | GCATGC | 2 cut(s) | 1454, 1659 |
| Sse9I | AATT | 8 cut(s) | 177, 560, 615, 1008, 1089, 1130, 1459, 1581 |
| SsiI | CCGC | 2 cut(s) | 328, 881 |
| SspMI | CTAG | 2 cut(s) | 536, 1586 |
| SstI | GAGCTC | 2 cut(s) | 465, 777 |
| StyD4I | CCNGG | 3 cut(s) | 381, 742, 1643 |
| StyI | CCWWGG | 2 cut(s) | 571, 719 |
| TaaI | ACNGT | 1 cut(s) | 418 |
| TaiI | ACGT | 2 cut(s) | 86, 1488 |
| TaqI | TCGA | 2 cut(s) | 1480, 1568 |
| TasI | AATT | 8 cut(s) | 177, 560, 615, 1008, 1089, 1130, 1459, 1581 |
| TatI | WGTACW | 1 cut(s) | 441 |
| TauI | GCSGC | 1 cut(s) | 883 |
| TfiI | GAWTC | 2 cut(s) | 805, 918 |
| Tru1I | TTAA | 3 cut(s) | 176, 968, 1254 |
| Tru9I | TTAA | 3 cut(s) | 176, 968, 1254 |
| TscAI | CASTG | 4 cut(s) | 460, 473, 1128, 1607 |
| TseFI | GTSAC | 1 cut(s) | 895 |
| TseI | GCWGC | 6 cut(s) | 193, 483, 883, 906, 1628, 1664 |
| Tsp45I | GTSAC | 1 cut(s) | 895 |
| TspDTI | ATGAA | 7 cut(s) | 50, 270, 1142, 1188, 1235, 1481, 1681 |
| TspRI | CASTG | 4 cut(s) | 460, 473, 1128, 1607 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 496 |
| Vha464I | CTTAAG | 1 cut(s) | 967 |
| VpaK11BI | GGWCC | 2 cut(s) | 296, 1698 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 380 |
| XapI | RAATTY | 1 cut(s) | 615 |
| XceI | RCATGY | 3 cut(s) | 1385, 1454, 1659 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 524 |
| XspI | CTAG | 2 cut(s) | 536, 1586 |
| Zsp2I | ATGCAT | 1 cut(s) | 1452 |