Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011502

Physical Location & Seq

Genomic Coordinates Forward (+)

60343039 .. 60345307

Gene Structure 2269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26859

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1656 bp

ATGGCTTTGTTTCATCCATTTCTTTCACACTATTCCACCTCTCTCCTGTCCCCAGTAACCCACAAACAATTAGGAGCTACACAGCCACAGCCACTCAAACTAGTCCCGGTTGCACACAGACCGCCGTTCAACGTCCCAACACGAAAGACCAAGTGCGGTGCAGTCGCAGACATCAAACCTGGAGCACCAGCTCCACTAGAAGATGATGATGAAGATCACAAGGTCCTGGTAGGTCCTACCAGCGAGCAAGAGCGGAGAGGAGATAGGATCGTGGCGGACTATGATTGGACGGAGGAATGGTACCCTCTGTACCTCACCCAGGACATTCCAGAGGATGCACCTTTGGGTCTAACTGTGTTCGATAAGCAACTAGTTCTCTACAGAGACGGCAATGGTGTGCTTCAGTGTTACCAAGATCGCTGCCCCCACAGGTTGGCGAAATTATCAGAAGGCCAACTGATTGATGGGAGACTGGAATGTTTATATCATGGTTGGCAATTTGAAGGTGCAGGAAAATGTGTCAAGATCCCTCAGCTTCCAGCTGATGCCAAAATTCCTAGGTCGGCTTGTGTGAAAACATATGAGGTGAGGGACTCGCAAGGTGTTGTGTGGGTTTGGATGTCCCATAAGACACCACCAAACCCTGCTAAGGTTCCTTGGTTTGAGAACTTTGACAGGCCAGGGTTCCAAGATACTTCAACAACCCATGAGCTTCCTTATGATCACTCCATACTTTTGGAGAACCTCATGGATCCAGCCCATGTTCCAATCTCACATGACAGGACAGACTGGAGTGCTAAAAGGGAAGATGCTCAACCGCTGCGTTTTGAGGTCACTGAACGCACCGACCGAGGATTTGCAGGCTGGTGGGGGAAGACAACTGATCAGTCCGCCTCCAGCTTCTTGCGCTTTGAAGCACCGTGTTCTCTTCAAAACAATCGAGAAATTGTTGACGACAAGACTGGGGAAACGCACTACTTCTCAGGTCTCTTTCTTTGTAGACCAACTGGACAAGGGAAGTCCATGCTCATTGTGAGGTTTGGAGGAACAAAAAGGTCTCCTCTGGCAAAATTGTTTCCCAAATGGTACTTCCATCAGAATGCAGGAAAGGTGTTTGAGCAAGACATGGGATTCCTTTCTTCTCAGAATGAGATACTTATCAAAGAAAAAGTGCCCACCAAGAACCTCTACCTTAACTTGAAATCCTCAGATACATGGGTAGCTGAATACAGAAAATGGATGGACAAAGTTGGGCATGGGATGCCTTACCACTTTGGCCACAGCACAATATCATTGCCCAAAGAGCCTGCCGTGGTCGAACATGCTCCTGCTGGACTTGTTGCAGGTGTATCGGCATCTTTGCCGGCCAAGGGAGGCATTGGAACCATGCATGCTCCAAATTTGGCCAACCGGTATTTCCGGCATGTGGTTCATTGCAAAGAGTGCAGAAATGTTGTCAAAGCTTTCCAAGCTTGGAAAAATTACCTTTCTGCTATTGCTGTTGCATTGACCGCTTTGGCAATTCTAATCTCCGGAAGGCAATGGAAGGCTCTTCTGTTAGTATCAGCAGCCGTATGCTCCGGCGGAGTTTATGCATGCTCGGCTGCTGTTGCATTGAACACAACAAATTTCATTAGGACACATAGGAGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015031 GO:0015833 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

551

Amino Acids

61.79

Weight (kDa)

8.67

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rieske	PF00355	99 - 185	2.3e-24	Rieske [2Fe-2S] domain
PaO	PF08417	304 - 390	1.3e-22	Pheophorbide a oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24820
fragaria_vesca	FvH4_2g41330
malus_domestica	MD08G1051400.v1.1
prunus_persica	Prupe.1G397100_v2.0.a1 Prupe.1G397200_v2.0.a1 Prupe.1G397200_v2.0.a1 Prupe.1G397200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0299151
rosa_laevigata	RLG00000011459 RLG00000028023
rosa_multiflora	Rmu_sc0001434.1_g000017
rosa_roxburghii	Rroxscaffold_4G00298790 Rroxscaffold_7G00168970
rosa_rugosa	Rorug06G0285700 Rorug06G0285800
rosa_samantha	Rh6AG396700 Rh6BG405200 Rh6CG411200 Rh6DG397900
rosa_wichuraiana	Rw6G034730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1334
Acc36I	ACCTGC	1 cut(s)	1334
Acc65I	GGTACC	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	300
AccB7I	CCANNNNNTGG	1 cut(s)	433
AccBSI	CCGCTC	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	1000
AccIII	TCCGGA	1 cut(s)	1532
AciI	CCGC	8 cut(s)	122, 156, 253, 275, 818, 891, 1512, 1584
AclWI	GGATC	4 cut(s)	275, 520, 746, 759
AcoI	YGGCCR	3 cut(s)	1276, 1365, 1404
AcsI	RAATTY	3 cut(s)	552, 1399, 1627
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	3 cut(s)	302, 311, 1088
AfiI	CCNNNNNNNGG	5 cut(s)	319, 433, 649, 1370, 1426
AgeI	ACCGGT	1 cut(s)	1410
AgsI	TTSAA	7 cut(s)	130, 503, 699, 914, 932, 1201, 1618
AhlI	ACTAGT	2 cut(s)	100, 370
AjnI	CCWGG	4 cut(s)	178, 225, 318, 679
AjuI	GAANNNNNNNTTGG	4 cut(s)	1073, 1105, 1400, 1432
AluBI	AGCT	9 cut(s)	77, 191, 535, 542, 712, 900, 1223, 1463, 1472
AluI	AGCT	9 cut(s)	77, 191, 535, 542, 712, 900, 1223, 1463, 1472
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	4 cut(s)	378, 463, 992, 1062
AlwI	GGATC	4 cut(s)	275, 520, 746, 759
Aor13HI	TCCGGA	1 cut(s)	1532
AoxI	GGCC	5 cut(s)	451, 677, 1276, 1365, 1404
ApeKI	GCWGC	4 cut(s)	420, 820, 1568, 1604
ApoI	RAATTY	3 cut(s)	552, 1399, 1627
ArsI	GACNNNNNNTTYG	2 cut(s)	839, 871
AsiGI	ACCGGT	1 cut(s)	1410
Asp718I	GGTACC	1 cut(s)	300
AspA2I	CCTAGG	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	909
AspS9I	GGNCC	2 cut(s)	223, 233
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	307, 598
AvaII	GGWCC	2 cut(s)	223, 233
AvrII	CCTAGG	1 cut(s)	557
BaeGI	GKGCMC	1 cut(s)	1176
BaeI	ACNNNNGTAYC	2 cut(s)	1203, 1236
BalI	TGGCCA	2 cut(s)	1278, 1406
BamHI	GGATCC	1 cut(s)	751
BanI	GGYRCC	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	881
Bbv12I	GWGCWC	1 cut(s)	187
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	4 cut(s)	407, 807, 1580, 1591
BccI	CCATC	3 cut(s)	458, 1101, 1234
BceAI	ACGGC	4 cut(s)	109, 403, 1295, 1556
BcgI	CGANNNNNNTGC	2 cut(s)	1332, 1366
BciT130I	CCWGG	4 cut(s)	180, 227, 320, 681
BclI	TGATCA	2 cut(s)	721, 883
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	4 cut(s)	378, 463, 992, 1062
BcuI	ACTAGT	2 cut(s)	100, 370
BfaI	CTAG	4 cut(s)	101, 197, 371, 558
BfmI	CTRYAG	1 cut(s)	379
BfuAI	ACCTGC	1 cut(s)	1334
BisI	GCNGC	4 cut(s)	421, 821, 1569, 1605
BlnI	CCTAGG	1 cut(s)	557
BlsI	GCNGC	4 cut(s)	422, 822, 1570, 1606
Bme1390I	CCNGG	5 cut(s)	107, 180, 227, 320, 681
Bme18I	GGWCC	2 cut(s)	223, 233
BmgT120I	GGNCC	2 cut(s)	223, 233
BmiI	GGNNCC	5 cut(s)	302, 654, 686, 753, 1384
BmrFI	CCNGG	5 cut(s)	107, 180, 227, 320, 681
BmrI	ACTGGG	2 cut(s)	47, 972
BmsI	GCATC	5 cut(s)	325, 535, 799, 1251, 1364
BmuI	ACTGGG	2 cut(s)	47, 972
BpiI	GAAGAC	1 cut(s)	881
BpmI	CTGGAG	3 cut(s)	201, 811, 880
Bpu10I	CCTNAGC	2 cut(s)	531, 648
BpuMI	CCSGG	1 cut(s)	107
BsaBI	GATNNNNATC	2 cut(s)	213, 1157
BsaI	GGTCTC	2 cut(s)	992, 1062
BsaJI	CCNNGG	7 cut(s)	318, 557, 656, 680, 850, 1311, 1368
BsaWI	WCCGGW	2 cut(s)	1410, 1532
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	5 cut(s)	319, 433, 649, 1370, 1426
Bse118I	RCCGGY	2 cut(s)	1363, 1410
Bse1I	ACTGG	5 cut(s)	53, 477, 794, 967, 1012
Bse3DI	GCAATG	4 cut(s)	397, 1292, 1432, 1547
Bse8I	GATNNNNATC	2 cut(s)	213, 1157
BseAI	TCCGGA	1 cut(s)	1532
BseBI	CCWGG	4 cut(s)	180, 227, 320, 681
BseDI	CCNNGG	7 cut(s)	318, 557, 656, 680, 850, 1311, 1368
BseGI	GGATG	5 cut(s)	13, 340, 624, 1245, 1266
BseJI	GATNNNNATC	2 cut(s)	213, 1157
BseLI	CCNNNNNNNGG	5 cut(s)	319, 433, 649, 1370, 1426
BseMI	GCAATG	4 cut(s)	397, 1292, 1432, 1547
BseMII	CTCAG	4 cut(s)	545, 996, 1157, 1221
BseNI	ACTGG	5 cut(s)	53, 477, 794, 967, 1012
BseRI	GAGGAG	2 cut(s)	273, 1050
BseSI	GKGCMC	1 cut(s)	1176
BseXI	GCAGC	4 cut(s)	407, 807, 1580, 1591
BsgI	GTGCAG	3 cut(s)	180, 528, 1465
Bsh1285I	CGRYCG	1 cut(s)	850
BshFI	GGCC	5 cut(s)	453, 679, 1278, 1367, 1406
BshNI	GGYRCC	1 cut(s)	300
BshTI	ACCGGT	1 cut(s)	1410
BsiEI	CGRYCG	1 cut(s)	850
BsiHKAI	GWGCWC	1 cut(s)	187
BsiSI	CCGG	6 cut(s)	107, 1364, 1411, 1420, 1533, 1581
BslFI	GGGAC	5 cut(s)	34, 89, 119, 605, 607
BslI	CCNNNNNNNGG	5 cut(s)	319, 433, 649, 1370, 1426
BsmAI	GTCTC	4 cut(s)	378, 463, 992, 1062
BsmBI	CGTCTC	1 cut(s)	378
BsmFI	GGGAC	5 cut(s)	34, 89, 119, 605, 607
BsmI	GAATGC	1 cut(s)	1105
BsnI	GGCC	5 cut(s)	453, 679, 1278, 1367, 1406
Bso31I	GGTCTC	2 cut(s)	992, 1062
Bsp1286I	GDGCHC	2 cut(s)	187, 1176
Bsp13I	TCCGGA	1 cut(s)	1532
Bsp143I	GATC	7 cut(s)	214, 267, 415, 525, 721, 751, 883
BspACI	CCGC	8 cut(s)	122, 156, 253, 275, 818, 891, 1512, 1584
BspANI	GGCC	5 cut(s)	453, 679, 1278, 1367, 1406
BspCNI	CTCAG	4 cut(s)	544, 995, 1156, 1220
BspEI	TCCGGA	1 cut(s)	1532
BspLI	GGNNCC	5 cut(s)	302, 654, 686, 753, 1384
BspMI	ACCTGC	1 cut(s)	1334
BspPI	GGATC	4 cut(s)	275, 520, 746, 759
BspQI	GCTCTTC	1 cut(s)	1557
BspT107I	GGYRCC	1 cut(s)	300
BspTNI	GGTCTC	2 cut(s)	992, 1062
BsrBI	CCGCTC	1 cut(s)	253
BsrDI	GCAATG	4 cut(s)	397, 1292, 1432, 1547
BsrFI	RCCGGY	2 cut(s)	1363, 1410
BsrI	ACTGG	5 cut(s)	53, 477, 794, 967, 1012
BssAI	RCCGGY	2 cut(s)	1363, 1410
BssECI	CCNNGG	7 cut(s)	318, 557, 656, 680, 850, 1311, 1368
BssMI	GATC	7 cut(s)	214, 267, 415, 525, 721, 751, 883
BssT1I	CCWWGG	3 cut(s)	557, 656, 1368
Bst2UI	CCWGG	4 cut(s)	180, 227, 320, 681
Bst4CI	ACNGT	2 cut(s)	355, 921
Bst6I	CTCTTC	2 cut(s)	933, 1557
BstAPI	GCANNNNNTGC	2 cut(s)	1261, 1443
BstC8I	GCNNGC	6 cut(s)	245, 862, 1308, 1365, 1392, 1597
BstDEI	CTNAG	5 cut(s)	531, 648, 982, 1143, 1207
BstDSI	CCRYGG	1 cut(s)	1311
BstENI	CCTNNNNNAGG	1 cut(s)	317
BstF5I	GGATG	5 cut(s)	13, 340, 624, 1245, 1266
BstHHI	GCGC	1 cut(s)	909
BstKTI	GATC	7 cut(s)	217, 270, 418, 528, 724, 754, 886
BstMAI	GTCTC	4 cut(s)	378, 463, 992, 1062
BstMBI	GATC	7 cut(s)	214, 267, 415, 525, 721, 751, 883
BstMCI	CGRYCG	1 cut(s)	850
BstMWI	GCNNNNNNNGC	8 cut(s)	906, 1261, 1303, 1443, 1469, 1511, 1601, 1610
BstNI	CCWGG	4 cut(s)	180, 227, 320, 681
BstNSI	RCATGY	4 cut(s)	1325, 1394, 1427, 1599
BstSCI	CCNGG	5 cut(s)	105, 178, 225, 318, 679
BstSFI	CTRYAG	1 cut(s)	379
BstSLI	GKGCMC	1 cut(s)	1176
BstV1I	GCAGC	4 cut(s)	407, 807, 1580, 1591
BstV2I	GAAGAC	1 cut(s)	881
BstX2I	RGATCY	2 cut(s)	525, 751
BstXI	CCANNNNNNTGG	1 cut(s)	736
BstYI	RGATCY	2 cut(s)	525, 751
BsuRI	GGCC	5 cut(s)	453, 679, 1278, 1367, 1406
BtgI	CCRYGG	1 cut(s)	1311
BtsCI	GGATG	5 cut(s)	13, 340, 624, 1245, 1266
BtsIMutI	CAGTG	2 cut(s)	410, 834
BveI	ACCTGC	1 cut(s)	1334
Cac8I	GCNNGC	6 cut(s)	245, 862, 1308, 1365, 1392, 1597
CfoI	GCGC	1 cut(s)	909
Cfr10I	RCCGGY	2 cut(s)	1363, 1410
Cfr13I	GGNCC	2 cut(s)	223, 233
Csp6I	GTAC	3 cut(s)	301, 310, 1087
CspAI	ACCGGT	1 cut(s)	1410
CviQI	GTAC	3 cut(s)	301, 310, 1087
DdeI	CTNAG	5 cut(s)	531, 648, 982, 1143, 1207
DpnI	GATC	7 cut(s)	216, 269, 417, 527, 723, 753, 885
DpnII	GATC	7 cut(s)	214, 267, 415, 525, 721, 751, 883
EaeI	YGGCCR	3 cut(s)	1276, 1365, 1404
Eam1104I	CTCTTC	2 cut(s)	933, 1557
EarI	CTCTTC	2 cut(s)	933, 1557
EciI	GGCGGA	3 cut(s)	290, 880, 1599
Eco130I	CCWWGG	3 cut(s)	557, 656, 1368
Eco31I	GGTCTC	2 cut(s)	992, 1062
Eco47I	GGWCC	2 cut(s)	223, 233
Eco57I	CTGAAG	1 cut(s)	386
EcoNI	CCTNNNNNAGG	1 cut(s)	317
EcoO109I	RGGNCCY	2 cut(s)	223, 233
EcoRII	CCWGG	4 cut(s)	178, 225, 318, 679
EcoT14I	CCWWGG	3 cut(s)	557, 656, 1368
EcoT22I	ATGCAT	2 cut(s)	1392, 1597
ErhI	CCWWGG	3 cut(s)	557, 656, 1368
Esp3I	CGTCTC	1 cut(s)	378
FaqI	GGGAC	5 cut(s)	34, 89, 119, 605, 607
FauNDI	CATATG	1 cut(s)	580
FbaI	TGATCA	2 cut(s)	721, 883
FblI	GTMKAC	1 cut(s)	1000
Fnu4HI	GCNGC	4 cut(s)	421, 821, 1569, 1605
FokI	GGATG	4 cut(s)	347, 631, 1252, 1273
Fsp4HI	GCNGC	4 cut(s)	421, 821, 1569, 1605
FspBI	CTAG	4 cut(s)	101, 197, 371, 558
GlaI	GCGC	1 cut(s)	908
GluI	GCNGC	4 cut(s)	421, 821, 1569, 1605
GsuI	CTGGAG	3 cut(s)	201, 811, 880
HaeIII	GGCC	5 cut(s)	453, 679, 1278, 1367, 1406
HapII	CCGG	6 cut(s)	107, 1364, 1411, 1420, 1533, 1581
HhaI	GCGC	1 cut(s)	909
Hin6I	GCGC	1 cut(s)	907
HinP1I	GCGC	1 cut(s)	907
HincII	GTYRAC	1 cut(s)	952
HindII	GTYRAC	1 cut(s)	952
HindIII	AAGCTT	2 cut(s)	1461, 1470
HinfI	GANTC	2 cut(s)	593, 1131
HpaII	CCGG	6 cut(s)	107, 1364, 1411, 1420, 1533, 1581
HphI	GGTGA	2 cut(s)	307, 598
Hpy166II	GTNNAC	2 cut(s)	952, 1001
Hpy188I	TCNGA	4 cut(s)	448, 1098, 1146, 1210
Hpy188III	TCNNGA	4 cut(s)	329, 523, 941, 1533
Hpy8I	GTNNAC	2 cut(s)	952, 1001
HpyAV	CCTTC	4 cut(s)	443, 497, 1530, 1540
HpyCH4III	ACNGT	2 cut(s)	355, 921
HpyCH4IV	ACGT	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	8 cut(s)	906, 1261, 1303, 1443, 1469, 1511, 1601, 1610
HpyF3I	CTNAG	5 cut(s)	531, 648, 982, 1143, 1207
HpySE526I	ACGT	1 cut(s)	132
HspAI	GCGC	1 cut(s)	907
Kpn2I	TCCGGA	1 cut(s)	1532
KpnI	GGTACC	1 cut(s)	304
KroI	GCCGGC	1 cut(s)	1363
KroNI	GCCGGC	1 cut(s)	1365
Ksp22I	TGATCA	2 cut(s)	721, 883
Kzo9I	GATC	7 cut(s)	214, 267, 415, 525, 721, 751, 883
LguI	GCTCTTC	1 cut(s)	1557
LmnI	GCTCC	6 cut(s)	74, 182, 196, 1330, 1399, 1583
Lsp1109I	GCAGC	4 cut(s)	407, 807, 1580, 1591
LweI	GCATC	5 cut(s)	325, 535, 799, 1251, 1364
MaeI	CTAG	4 cut(s)	101, 197, 371, 558
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	3 cut(s)	55, 407, 832
MalI	GATC	7 cut(s)	216, 269, 417, 527, 723, 753, 885
MbiI	CCGCTC	1 cut(s)	253
MboI	GATC	7 cut(s)	214, 267, 415, 525, 721, 751, 883
MboII	GAAGA	7 cut(s)	212, 224, 818, 886, 920, 1131, 1544
MflI	RGATCY	2 cut(s)	525, 751
MhlI	GDGCHC	2 cut(s)	187, 1176
MlsI	TGGCCA	2 cut(s)	1278, 1406
MluNI	TGGCCA	2 cut(s)	1278, 1406
MlyI	GAGTC	1 cut(s)	587
Mox20I	TGGCCA	2 cut(s)	1278, 1406
Mph1103I	ATGCAT	2 cut(s)	1392, 1597
MroI	TCCGGA	1 cut(s)	1532
MroNI	GCCGGC	1 cut(s)	1363
MscI	TGGCCA	2 cut(s)	1278, 1406
MseI	TTAA	1 cut(s)	1194
MslI	CAYNNNNRTG	1 cut(s)	1098
Msp20I	TGGCCA	2 cut(s)	1278, 1406
MspA1I	CMGCKG	2 cut(s)	542, 820
MspI	CCGG	6 cut(s)	107, 1364, 1411, 1420, 1533, 1581
MspR9I	CCNGG	5 cut(s)	107, 180, 227, 320, 681
Mva1269I	GAATGC	1 cut(s)	1105
MvaI	CCWGG	4 cut(s)	180, 227, 320, 681
MwoI	GCNNNNNNNGC	8 cut(s)	906, 1261, 1303, 1443, 1469, 1511, 1601, 1610
NaeI	GCCGGC	1 cut(s)	1365
NciI	CCSGG	1 cut(s)	107
NdeI	CATATG	1 cut(s)	580
NdeII	GATC	7 cut(s)	214, 267, 415, 525, 721, 751, 883
NgoMIV	GCCGGC	1 cut(s)	1363
NlaIV	GGNNCC	5 cut(s)	302, 654, 686, 753, 1384
NmeAIII	GCCGAG	1 cut(s)	1580
NmuCI	GTSAC	1 cut(s)	832
NsiI	ATGCAT	2 cut(s)	1392, 1597
NspI	RCATGY	4 cut(s)	1325, 1394, 1427, 1599
PaeI	GCATGC	2 cut(s)	1394, 1599
PaqCI	CACCTGC	1 cut(s)	1334
PciSI	GCTCTTC	1 cut(s)	1557
PcsI	WCGNNNNNNNCGW	1 cut(s)	847
PctI	GAATGC	1 cut(s)	1105
PdiI	GCCGGC	1 cut(s)	1365
PfeI	GAWTC	1 cut(s)	1131
PflMI	CCANNNNNTGG	1 cut(s)	433
PinAI	ACCGGT	1 cut(s)	1410
PkrI	GCNGC	4 cut(s)	422, 822, 1570, 1606
PleI	GAGTC	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	587
PpuMI	RGGWCCY	2 cut(s)	223, 233
Psp5II	RGGWCCY	2 cut(s)	223, 233
Psp6I	CCWGG	4 cut(s)	178, 225, 318, 679
PspGI	CCWGG	4 cut(s)	178, 225, 318, 679
PspN4I	GGNNCC	5 cut(s)	302, 654, 686, 753, 1384
PspPI	GGNCC	2 cut(s)	223, 233
PspPPI	RGGWCCY	2 cut(s)	223, 233
PsuI	RGATCY	2 cut(s)	525, 751
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	3 cut(s)	302, 311, 1088
RsaNI	GTAC	3 cut(s)	301, 310, 1087
RseI	CAYNNNNRTG	1 cut(s)	1098
SapI	GCTCTTC	1 cut(s)	1557
SaqAI	TTAA	1 cut(s)	1194
SatI	GCNGC	4 cut(s)	421, 821, 1569, 1605
Sau3AI	GATC	7 cut(s)	214, 267, 415, 525, 721, 751, 883
Sau96I	GGNCC	2 cut(s)	223, 233
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	5 cut(s)	107, 180, 227, 320, 681
SduI	GDGCHC	2 cut(s)	187, 1176
SfaNI	GCATC	5 cut(s)	325, 535, 799, 1251, 1364
SfcI	CTRYAG	1 cut(s)	379
SinI	GGWCC	2 cut(s)	223, 233
SmiMI	CAYNNNNRTG	1 cut(s)	1098
SpeI	ACTAGT	2 cut(s)	100, 370
SphI	GCATGC	2 cut(s)	1394, 1599
SsiI	CCGC	8 cut(s)	122, 156, 253, 275, 818, 891, 1512, 1584
SspMI	CTAG	4 cut(s)	101, 197, 371, 558
StyD4I	CCNGG	5 cut(s)	105, 178, 225, 318, 679
StyI	CCWWGG	3 cut(s)	557, 656, 1368
TaaI	ACNGT	2 cut(s)	355, 921
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	3 cut(s)	360, 940, 1317
TaqII	GACCGA	1 cut(s)	864
TfiI	GAWTC	1 cut(s)	1131
Tru1I	TTAA	1 cut(s)	1194
Tru9I	TTAA	1 cut(s)	1194
TscAI	CASTG	2 cut(s)	410, 841
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	4 cut(s)	420, 820, 1568, 1604
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	3 cut(s)	225, 1421, 1621
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	2 cut(s)	410, 841
Van91I	CCANNNNNTGG	1 cut(s)	433
VpaK11BI	GGWCC	2 cut(s)	223, 233
XagI	CCTNNNNNAGG	1 cut(s)	317
XapI	RAATTY	3 cut(s)	552, 1399, 1627
XceI	RCATGY	4 cut(s)	1325, 1394, 1427, 1599
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XmaJI	CCTAGG	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	1000
XspI	CTAG	4 cut(s)	101, 197, 371, 558
Zsp2I	ATGCAT	2 cut(s)	1392, 1597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.