Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011502

Physical Location & Seq

Genomic Coordinates Forward (+)

63245057 .. 63247394

Gene Structure 2338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG405200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGGCTTTGTTTCATCCATTTCTTTCACACTATTCCACCTCTCTCCTGTCCCCAGTAACCCACAAACAACCACAGTCACAGCCACTCAAACTAGTCAGACCGCCATTCAACGCCCCAACACGAAAGACCAAGTGCGGTGCAGTCGCAGACATCAAACCTGCAGCACCAGCTCCAGTAGGTGATGATGATGAAGATCACAAGGTCCTGCTGGTAGGTCCTACCAGCGAGCAAGAGCGGAGAGGAGAGAGGATCGTGGCGGACTATGATTGGACGGAGGAATGGTACCCTCTGTACCTCACCCAGGACATTCCAGAGGATGCACCTTTGGGTCTAACTGTGTTCGATAAGCAACTAGTTCTCTACAGAGACGGCAATGGTGTGCTTCAGTGTTACCAAGATCGCTGCCCCCACAGGTTGGCGAAATTATCAGAAGGCCAACTGATTGATGGGAGACTGGAATGTTTATATCATGGTTGGCAATTTGAAGGTGCAGGAAAATGTGTTAAGATCCCTCAGCTTCCAGCTGATGCCAAAATTCCTAGGTCGGCTTGTGTGAAAACATATGAGGTGAGGGACTCGCAAGGTGTTGTGTGGGTTTGGATGTCTCGTAAGACACCACCAAACCCTGCTAAGCTTCCTTGGTTTGAGAACTTTGACAGGCCAGGGTTCCAAGATACTTCAACAACCCATGAGCTTCCTTATGATCACTCCATACTTTTGGAGAACCTCATGGATCCAGCCCATGTTCCGATCTCACATGACAGGACAGACTGGAGTGCTAAAAGGGAAGATGCTCAACCACTGCGTTTTGAGGTCACCGAACGCACCGACCGAGGATTTGCAGGCTGGTGGGGGAAGACAACTGATCAGTCCGCCTCCAGCTTCTTGCGCTTTGAAGCACCGTGTTCTCTTCAAAACAATCGAGAAATTGTTGACGACAAGACTGGGGAAACGCACTACTTCTCAGGTCTCTTTCTTTGCAGACCAACTGGACAAGGGAAGTCCATGCTCATTGTGAGGTTTGGAGGAACAAAAAGGTCTCCTCTGGCAAAATTGTTTCCCAAATGGTACTTCCATCAGAATGCAGGAAAGGTGTTTGAGCAAGACATGGGATTCCTTTCTTCTCAGAATGAGATACTTCTGAAAGAAAAAGTGCCCACCAAGAACCTCTACCTTAACTTGAAATCCTCAGATACATGGGTAGCTGAATACAGAAAATGGATGGACAAAGTTGGGCATGGGATGCCTTACCACTTTGGCCACAGCACAATATCGTTGCCCAAAGAGCCTGCCGTGGTCGAACATGCTCCTGCTGGACTTGTTGCAGGTGTATCGGCATCTTTGCCTGCCAAGGGAGGCATTGGATCCATGCATGCTCCAAATTTGGCCAACCGGTATTTCCGGCATGTGGTTCATTGCAAAGAGTGCAGAAATGTTGTCAAAGCTTTCCAAGCCTGGAAAAATTACCTTTCTGCTATTGCTGTTGCATTGACCGCTTTGGCAATTCTAATCTCCGGAAGGCAATGGAAGGCTCTTCTGTTAGTGTCAGCAGCCGTATGCTCCGGCGGAGTTTATGCATGCTCGGCTGCTGTTGCATTGAACACAACAAATTTCATTAGGACACATAGGAGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015031 GO:0015833 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

545

Amino Acids

61.18

Weight (kDa)

8.83

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rieske	PF00355	93 - 179	2.3e-24	Rieske [2Fe-2S] domain
PaO	PF08417	298 - 384	5.7e-23	Pheophorbide a oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24820
fragaria_vesca	FvH4_2g41330
malus_domestica	MD08G1051400.v1.1
prunus_persica	Prupe.1G397100_v2.0.a1 Prupe.1G397200_v2.0.a1 Prupe.1G397200_v2.0.a1 Prupe.1G397200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0299151
rosa_laevigata	RLG00000011459 RLG00000028023
rosa_multiflora	Rmu_sc0001434.1_g000017
rosa_roxburghii	Rroxscaffold_4G00298790 Rroxscaffold_7G00168970
rosa_rugosa	Rorug06G0285700 Rorug06G0285800
rosa_samantha	Rh6AG396700 Rh6BG405200 Rh6CG411200 Rh6DG397900
rosa_wichuraiana	Rw6G034730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1316
Acc36I	ACCTGC	2 cut(s)	166, 1316
Acc65I	GGTACC	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	282
AccB7I	CCANNNNNTGG	1 cut(s)	415
AccBSI	CCGCTC	1 cut(s)	235
AccIII	TCCGGA	1 cut(s)	1514
AciI	CCGC	7 cut(s)	101, 135, 235, 257, 873, 1494, 1566
AclWI	GGATC	6 cut(s)	257, 502, 728, 741, 1359, 1372
AcoI	YGGCCR	2 cut(s)	1258, 1386
AcsI	RAATTY	3 cut(s)	534, 1381, 1609
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	3 cut(s)	284, 293, 1070
AfiI	CCNNNNNNNGG	4 cut(s)	301, 415, 1352, 1408
AgeI	ACCGGT	1 cut(s)	1392
AgsI	TTSAA	7 cut(s)	109, 485, 681, 896, 914, 1183, 1600
AhlI	ACTAGT	2 cut(s)	91, 352
AjnI	CCWGG	3 cut(s)	300, 661, 1454
AjuI	GAANNNNNNNTTGG	4 cut(s)	1055, 1087, 1382, 1414
AluBI	AGCT	8 cut(s)	170, 517, 524, 634, 694, 882, 1205, 1445
AluI	AGCT	8 cut(s)	170, 517, 524, 634, 694, 882, 1205, 1445
Alw26I	GTCTC	5 cut(s)	360, 445, 609, 974, 1044
AlwI	GGATC	6 cut(s)	257, 502, 728, 741, 1359, 1372
Aor13HI	TCCGGA	1 cut(s)	1514
AoxI	GGCC	4 cut(s)	433, 659, 1258, 1386
ApeKI	GCWGC	4 cut(s)	161, 402, 1550, 1586
ApoI	RAATTY	3 cut(s)	534, 1381, 1609
ArsI	GACNNNNNNTTYG	2 cut(s)	821, 853
AsiGI	ACCGGT	1 cut(s)	1392
Asp718I	GGTACC	1 cut(s)	282
AspA2I	CCTAGG	1 cut(s)	539
AspLEI	GCGC	1 cut(s)	891
AspS9I	GGNCC	2 cut(s)	202, 215
AsuHPI	GGTGA	4 cut(s)	191, 289, 580, 808
AvaII	GGWCC	2 cut(s)	202, 215
AvrII	CCTAGG	1 cut(s)	539
BaeGI	GKGCMC	1 cut(s)	1158
BaeI	ACNNNNGTAYC	2 cut(s)	1185, 1218
BalI	TGGCCA	2 cut(s)	1260, 1388
BamHI	GGATCC	2 cut(s)	733, 1364
BanI	GGYRCC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	863
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	4 cut(s)	173, 389, 1562, 1573
BccI	CCATC	3 cut(s)	440, 1083, 1216
BceAI	ACGGC	3 cut(s)	385, 1277, 1538
BcgI	CGANNNNNNTGC	2 cut(s)	1314, 1348
BciT130I	CCWGG	3 cut(s)	302, 663, 1456
BclI	TGATCA	2 cut(s)	703, 865
BcoDI	GTCTC	5 cut(s)	360, 445, 609, 974, 1044
BcuI	ACTAGT	2 cut(s)	91, 352
BfaI	CTAG	3 cut(s)	92, 353, 540
BfmI	CTRYAG	2 cut(s)	159, 361
BfuAI	ACCTGC	2 cut(s)	166, 1316
BisI	GCNGC	4 cut(s)	162, 403, 1551, 1587
BlnI	CCTAGG	1 cut(s)	539
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	4 cut(s)	163, 404, 1552, 1588
Bme1390I	CCNGG	3 cut(s)	302, 663, 1456
Bme18I	GGWCC	2 cut(s)	202, 215
BmgT120I	GGNCC	2 cut(s)	202, 215
BmiI	GGNNCC	4 cut(s)	284, 668, 735, 1366
BmrFI	CCNGG	3 cut(s)	302, 663, 1456
BmrI	ACTGGG	2 cut(s)	47, 954
BmsI	GCATC	5 cut(s)	307, 517, 781, 1233, 1346
BmuI	ACTGGG	2 cut(s)	47, 954
BpiI	GAAGAC	1 cut(s)	863
BpmI	CTGGAG	3 cut(s)	156, 793, 862
Bpu10I	CCTNAGC	1 cut(s)	513
Bpu1102I	GCTNAGC	1 cut(s)	630
BsaBI	GATNNNNATC	1 cut(s)	192
BsaI	GGTCTC	2 cut(s)	974, 1044
BsaJI	CCNNGG	7 cut(s)	300, 539, 638, 662, 832, 1293, 1350
BsaWI	WCCGGW	2 cut(s)	1392, 1514
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	4 cut(s)	301, 415, 1352, 1408
Bse118I	RCCGGY	1 cut(s)	1392
Bse1I	ACTGG	6 cut(s)	53, 173, 459, 776, 949, 994
Bse3DI	GCAATG	3 cut(s)	379, 1414, 1529
Bse8I	GATNNNNATC	1 cut(s)	192
BseAI	TCCGGA	1 cut(s)	1514
BseBI	CCWGG	3 cut(s)	302, 663, 1456
BseDI	CCNNGG	7 cut(s)	300, 539, 638, 662, 832, 1293, 1350
BseGI	GGATG	5 cut(s)	13, 322, 606, 1227, 1248
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	4 cut(s)	301, 415, 1352, 1408
BseMI	GCAATG	3 cut(s)	379, 1414, 1529
BseMII	CTCAG	4 cut(s)	527, 978, 1139, 1203
BseNI	ACTGG	6 cut(s)	53, 173, 459, 776, 949, 994
BseRI	GAGGAG	2 cut(s)	255, 1032
BseSI	GKGCMC	1 cut(s)	1158
BseXI	GCAGC	4 cut(s)	173, 389, 1562, 1573
BsgI	GTGCAG	3 cut(s)	159, 510, 1447
Bsh1285I	CGRYCG	1 cut(s)	832
BshFI	GGCC	4 cut(s)	435, 661, 1260, 1388
BshNI	GGYRCC	1 cut(s)	282
BshTI	ACCGGT	1 cut(s)	1392
BsiEI	CGRYCG	1 cut(s)	832
BsiSI	CCGG	4 cut(s)	1393, 1402, 1515, 1563
BslFI	GGGAC	2 cut(s)	34, 587
BslI	CCNNNNNNNGG	4 cut(s)	301, 415, 1352, 1408
BsmAI	GTCTC	5 cut(s)	360, 445, 609, 974, 1044
BsmBI	CGTCTC	1 cut(s)	360
BsmFI	GGGAC	2 cut(s)	34, 587
BsmI	GAATGC	1 cut(s)	1087
BsnI	GGCC	4 cut(s)	435, 661, 1260, 1388
Bso31I	GGTCTC	2 cut(s)	974, 1044
Bsp1286I	GDGCHC	1 cut(s)	1158
Bsp13I	TCCGGA	1 cut(s)	1514
Bsp143I	GATC	9 cut(s)	193, 249, 397, 507, 703, 733, 750, 865, 1364
Bsp1720I	GCTNAGC	1 cut(s)	630
BspACI	CCGC	7 cut(s)	101, 135, 235, 257, 873, 1494, 1566
BspANI	GGCC	4 cut(s)	435, 661, 1260, 1388
BspCNI	CTCAG	4 cut(s)	526, 977, 1138, 1202
BspEI	TCCGGA	1 cut(s)	1514
BspLI	GGNNCC	4 cut(s)	284, 668, 735, 1366
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	2 cut(s)	166, 1316
BspPI	GGATC	6 cut(s)	257, 502, 728, 741, 1359, 1372
BspQI	GCTCTTC	1 cut(s)	1539
BspT107I	GGYRCC	1 cut(s)	282
BspTNI	GGTCTC	2 cut(s)	974, 1044
BsrBI	CCGCTC	1 cut(s)	235
BsrDI	GCAATG	3 cut(s)	379, 1414, 1529
BsrFI	RCCGGY	1 cut(s)	1392
BsrI	ACTGG	6 cut(s)	53, 173, 459, 776, 949, 994
BssAI	RCCGGY	1 cut(s)	1392
BssECI	CCNNGG	7 cut(s)	300, 539, 638, 662, 832, 1293, 1350
BssMI	GATC	9 cut(s)	193, 249, 397, 507, 703, 733, 750, 865, 1364
BssT1I	CCWWGG	3 cut(s)	539, 638, 1350
Bst2UI	CCWGG	3 cut(s)	302, 663, 1456
Bst4CI	ACNGT	3 cut(s)	75, 337, 903
Bst6I	CTCTTC	2 cut(s)	915, 1539
BstAPI	GCANNNNNTGC	2 cut(s)	1243, 1425
BstC8I	GCNNGC	6 cut(s)	227, 844, 1290, 1347, 1374, 1579
BstDEI	CTNAG	5 cut(s)	513, 630, 964, 1125, 1189
BstDSI	CCRYGG	1 cut(s)	1293
BstEII	GGTNACC	1 cut(s)	814
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstF5I	GGATG	5 cut(s)	13, 322, 606, 1227, 1248
BstHHI	GCGC	1 cut(s)	891
BstKTI	GATC	9 cut(s)	196, 252, 400, 510, 706, 736, 753, 868, 1367
BstMAI	GTCTC	5 cut(s)	360, 445, 609, 974, 1044
BstMBI	GATC	9 cut(s)	193, 249, 397, 507, 703, 733, 750, 865, 1364
BstMCI	CGRYCG	1 cut(s)	832
BstMWI	GCNNNNNNNGC	9 cut(s)	167, 888, 1243, 1285, 1425, 1451, 1493, 1583, 1592
BstNI	CCWGG	3 cut(s)	302, 663, 1456
BstNSI	RCATGY	4 cut(s)	1307, 1376, 1409, 1581
BstPI	GGTNACC	1 cut(s)	814
BstSCI	CCNGG	3 cut(s)	300, 661, 1454
BstSFI	CTRYAG	2 cut(s)	159, 361
BstSLI	GKGCMC	1 cut(s)	1158
BstV1I	GCAGC	4 cut(s)	173, 389, 1562, 1573
BstV2I	GAAGAC	1 cut(s)	863
BstX2I	RGATCY	3 cut(s)	507, 733, 1364
BstXI	CCANNNNNNTGG	1 cut(s)	718
BstYI	RGATCY	3 cut(s)	507, 733, 1364
BsuRI	GGCC	4 cut(s)	435, 661, 1260, 1388
BtgI	CCRYGG	1 cut(s)	1293
BtsCI	GGATG	5 cut(s)	13, 322, 606, 1227, 1248
BtsI	GCAGTG	1 cut(s)	800
BtsIMutI	CAGTG	2 cut(s)	392, 800
BveI	ACCTGC	2 cut(s)	166, 1316
Cac8I	GCNNGC	6 cut(s)	227, 844, 1290, 1347, 1374, 1579
CfoI	GCGC	1 cut(s)	891
Cfr10I	RCCGGY	1 cut(s)	1392
Cfr13I	GGNCC	2 cut(s)	202, 215
Csp6I	GTAC	3 cut(s)	283, 292, 1069
CspAI	ACCGGT	1 cut(s)	1392
CviQI	GTAC	3 cut(s)	283, 292, 1069
DdeI	CTNAG	5 cut(s)	513, 630, 964, 1125, 1189
DpnI	GATC	9 cut(s)	195, 251, 399, 509, 705, 735, 752, 867, 1366
DpnII	GATC	9 cut(s)	193, 249, 397, 507, 703, 733, 750, 865, 1364
EaeI	YGGCCR	2 cut(s)	1258, 1386
Eam1104I	CTCTTC	2 cut(s)	915, 1539
EarI	CTCTTC	2 cut(s)	915, 1539
EciI	GGCGGA	3 cut(s)	272, 862, 1581
Eco130I	CCWWGG	3 cut(s)	539, 638, 1350
Eco31I	GGTCTC	2 cut(s)	974, 1044
Eco47I	GGWCC	2 cut(s)	202, 215
Eco57I	CTGAAG	1 cut(s)	368
Eco91I	GGTNACC	1 cut(s)	814
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoO109I	RGGNCCY	2 cut(s)	202, 215
EcoO65I	GGTNACC	1 cut(s)	814
EcoRII	CCWGG	3 cut(s)	300, 661, 1454
EcoT14I	CCWWGG	3 cut(s)	539, 638, 1350
EcoT22I	ATGCAT	2 cut(s)	1374, 1579
ErhI	CCWWGG	3 cut(s)	539, 638, 1350
Esp3I	CGTCTC	1 cut(s)	360
FaqI	GGGAC	2 cut(s)	34, 587
FauNDI	CATATG	1 cut(s)	562
FbaI	TGATCA	2 cut(s)	703, 865
Fnu4HI	GCNGC	4 cut(s)	162, 403, 1551, 1587
FokI	GGATG	4 cut(s)	329, 613, 1234, 1255
Fsp4HI	GCNGC	4 cut(s)	162, 403, 1551, 1587
FspBI	CTAG	3 cut(s)	92, 353, 540
GlaI	GCGC	1 cut(s)	890
GluI	GCNGC	4 cut(s)	162, 403, 1551, 1587
GsuI	CTGGAG	3 cut(s)	156, 793, 862
HaeIII	GGCC	4 cut(s)	435, 661, 1260, 1388
HapII	CCGG	4 cut(s)	1393, 1402, 1515, 1563
HhaI	GCGC	1 cut(s)	891
Hin6I	GCGC	1 cut(s)	889
HinP1I	GCGC	1 cut(s)	889
HincII	GTYRAC	1 cut(s)	934
HindII	GTYRAC	1 cut(s)	934
HindIII	AAGCTT	2 cut(s)	632, 1443
HinfI	GANTC	2 cut(s)	575, 1113
HpaII	CCGG	4 cut(s)	1393, 1402, 1515, 1563
HphI	GGTGA	4 cut(s)	191, 289, 580, 808
Hpy166II	GTNNAC	1 cut(s)	934
Hpy188I	TCNGA	7 cut(s)	98, 430, 750, 1080, 1128, 1143, 1192
Hpy188III	TCNNGA	3 cut(s)	311, 923, 1515
Hpy8I	GTNNAC	1 cut(s)	934
HpyAV	CCTTC	4 cut(s)	425, 479, 1512, 1522
HpyCH4III	ACNGT	3 cut(s)	75, 337, 903
HpyF10VI	GCNNNNNNNGC	9 cut(s)	167, 888, 1243, 1285, 1425, 1451, 1493, 1583, 1592
HpyF3I	CTNAG	5 cut(s)	513, 630, 964, 1125, 1189
HspAI	GCGC	1 cut(s)	889
Kpn2I	TCCGGA	1 cut(s)	1514
KpnI	GGTACC	1 cut(s)	286
Ksp22I	TGATCA	2 cut(s)	703, 865
Kzo9I	GATC	9 cut(s)	193, 249, 397, 507, 703, 733, 750, 865, 1364
LguI	GCTCTTC	1 cut(s)	1539
LmnI	GCTCC	4 cut(s)	175, 1312, 1381, 1565
Lsp1109I	GCAGC	4 cut(s)	173, 389, 1562, 1573
LweI	GCATC	5 cut(s)	307, 517, 781, 1233, 1346
MaeI	CTAG	3 cut(s)	92, 353, 540
MaeIII	GTNAC	4 cut(s)	55, 75, 389, 814
MalI	GATC	9 cut(s)	195, 251, 399, 509, 705, 735, 752, 867, 1366
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	9 cut(s)	193, 249, 397, 507, 703, 733, 750, 865, 1364
MboII	GAAGA	6 cut(s)	203, 800, 868, 902, 1113, 1526
MflI	RGATCY	3 cut(s)	507, 733, 1364
MhlI	GDGCHC	1 cut(s)	1158
MlsI	TGGCCA	2 cut(s)	1260, 1388
MluCI	AATT	9 cut(s)	422, 479, 534, 927, 1052, 1381, 1462, 1503, 1609
MluNI	TGGCCA	2 cut(s)	1260, 1388
MlyI	GAGTC	1 cut(s)	569
Mox20I	TGGCCA	2 cut(s)	1260, 1388
Mph1103I	ATGCAT	2 cut(s)	1374, 1579
MroI	TCCGGA	1 cut(s)	1514
MscI	TGGCCA	2 cut(s)	1260, 1388
MseI	TTAA	2 cut(s)	504, 1176
MslI	CAYNNNNRTG	1 cut(s)	1080
Msp20I	TGGCCA	2 cut(s)	1260, 1388
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	4 cut(s)	1393, 1402, 1515, 1563
MspR9I	CCNGG	3 cut(s)	302, 663, 1456
Mva1269I	GAATGC	1 cut(s)	1087
MvaI	CCWGG	3 cut(s)	302, 663, 1456
MwoI	GCNNNNNNNGC	9 cut(s)	167, 888, 1243, 1285, 1425, 1451, 1493, 1583, 1592
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	9 cut(s)	193, 249, 397, 507, 703, 733, 750, 865, 1364
NlaIV	GGNNCC	4 cut(s)	284, 668, 735, 1366
NmeAIII	GCCGAG	1 cut(s)	1562
NmuCI	GTSAC	2 cut(s)	75, 814
NsiI	ATGCAT	2 cut(s)	1374, 1579
NspI	RCATGY	4 cut(s)	1307, 1376, 1409, 1581
PaeI	GCATGC	2 cut(s)	1376, 1581
PaqCI	CACCTGC	1 cut(s)	1316
PciSI	GCTCTTC	1 cut(s)	1539
PcsI	WCGNNNNNNNCGW	1 cut(s)	829
PctI	GAATGC	1 cut(s)	1087
PfeI	GAWTC	1 cut(s)	1113
PflMI	CCANNNNNTGG	1 cut(s)	415
PinAI	ACCGGT	1 cut(s)	1392
PkrI	GCNGC	4 cut(s)	163, 404, 1552, 1588
PleI	GAGTC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	569
PpuMI	RGGWCCY	2 cut(s)	202, 215
Psp5II	RGGWCCY	2 cut(s)	202, 215
Psp6I	CCWGG	3 cut(s)	300, 661, 1454
PspEI	GGTNACC	1 cut(s)	814
PspGI	CCWGG	3 cut(s)	300, 661, 1454
PspN4I	GGNNCC	4 cut(s)	284, 668, 735, 1366
PspPI	GGNCC	2 cut(s)	202, 215
PspPPI	RGGWCCY	2 cut(s)	202, 215
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	3 cut(s)	507, 733, 1364
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	3 cut(s)	284, 293, 1070
RsaNI	GTAC	3 cut(s)	283, 292, 1069
RseI	CAYNNNNRTG	1 cut(s)	1080
SapI	GCTCTTC	1 cut(s)	1539
SaqAI	TTAA	2 cut(s)	504, 1176
SatI	GCNGC	4 cut(s)	162, 403, 1551, 1587
Sau3AI	GATC	9 cut(s)	193, 249, 397, 507, 703, 733, 750, 865, 1364
Sau96I	GGNCC	2 cut(s)	202, 215
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	3 cut(s)	302, 663, 1456
SduI	GDGCHC	1 cut(s)	1158
SfaNI	GCATC	5 cut(s)	307, 517, 781, 1233, 1346
SfcI	CTRYAG	2 cut(s)	159, 361
SinI	GGWCC	2 cut(s)	202, 215
SmiMI	CAYNNNNRTG	1 cut(s)	1080
SpeI	ACTAGT	2 cut(s)	91, 352
SphI	GCATGC	2 cut(s)	1376, 1581
Sse9I	AATT	9 cut(s)	422, 479, 534, 927, 1052, 1381, 1462, 1503, 1609
SsiI	CCGC	7 cut(s)	101, 135, 235, 257, 873, 1494, 1566
SspMI	CTAG	3 cut(s)	92, 353, 540
StyD4I	CCNGG	3 cut(s)	300, 661, 1454
StyI	CCWWGG	3 cut(s)	539, 638, 1350
TaaI	ACNGT	3 cut(s)	75, 337, 903
TaqI	TCGA	3 cut(s)	342, 922, 1299
TaqII	GACCGA	1 cut(s)	846
TasI	AATT	9 cut(s)	422, 479, 534, 927, 1052, 1381, 1462, 1503, 1609
TfiI	GAWTC	1 cut(s)	1113
Tru1I	TTAA	2 cut(s)	504, 1176
Tru9I	TTAA	2 cut(s)	504, 1176
TscAI	CASTG	2 cut(s)	392, 807
TseFI	GTSAC	2 cut(s)	75, 814
TseI	GCWGC	4 cut(s)	161, 402, 1550, 1586
Tsp45I	GTSAC	2 cut(s)	75, 814
TspDTI	ATGAA	3 cut(s)	204, 1403, 1603
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	2 cut(s)	392, 807
Van91I	CCANNNNNTGG	1 cut(s)	415
VpaK11BI	GGWCC	2 cut(s)	202, 215
XagI	CCTNNNNNAGG	1 cut(s)	299
XapI	RAATTY	3 cut(s)	534, 1381, 1609
XceI	RCATGY	4 cut(s)	1307, 1376, 1409, 1581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	443
XmaJI	CCTAGG	1 cut(s)	539
XspI	CTAG	3 cut(s)	92, 353, 540
Zsp2I	ATGCAT	2 cut(s)	1374, 1579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.