Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011502

Physical Location & Seq

Genomic Coordinates Reverse (-)

43596869 .. 43597150

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0285700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAAACTGAGTGCCACCGGTTTTATTTCCGTGCGGCAACATAGTGGGAAAGCTGTGCTATTTGCAATTATGCTTCTTCGTGATAGAGTTATCTTTCCTGTATGTCACCGCTATGTCAAAGCAAATGGAGTACCCATACATGCACTCTTTGCTAATTGGTGCTTGTTAAAATACATAGATTTTGTGGAGAGACCTGATATTATTTCAGGATGTTCTCTTTATGCTTATTGTAATATGGAGTTATTCAGGATGTCCCCCCCTTGTATTCTACAATTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015031 GO:0015833 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

93

Amino Acids

10.69

Weight (kDa)

9.17

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24820
fragaria_vesca	FvH4_2g41330
malus_domestica	MD08G1051400.v1.1
prunus_persica	Prupe.1G397100_v2.0.a1 Prupe.1G397200_v2.0.a1 Prupe.1G397200_v2.0.a1 Prupe.1G397200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0299151
rosa_laevigata	RLG00000011459 RLG00000028023
rosa_multiflora	Rmu_sc0001434.1_g000017
rosa_roxburghii	Rroxscaffold_4G00298790 Rroxscaffold_7G00168970
rosa_rugosa	Rorug06G0285700 Rorug06G0285800
rosa_samantha	Rh6AG396700 Rh6BG405200 Rh6CG411200 Rh6DG397900
rosa_wichuraiana	Rw6G034730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	34, 109
AfaI	GTAC	1 cut(s)	132
AgeI	ACCGGT	1 cut(s)	17
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	184
AsiGI	ACCGGT	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	184
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	184
BsaWI	WCCGGW	1 cut(s)	17
Bse118I	RCCGGY	1 cut(s)	17
BseGI	GGATG	2 cut(s)	215, 255
BshTI	ACCGGT	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	238
Bso31I	GGTCTC	1 cut(s)	184
BspACI	CCGC	2 cut(s)	34, 109
BspTNI	GGTCTC	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	2 cut(s)	215, 255
BstMAI	GTCTC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	215, 255
Cfr10I	RCCGGY	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	131
CspAI	ACCGGT	1 cut(s)	17
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	1 cut(s)	53
CviKI_1	RGCY	1 cut(s)	53
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	184
FaeI	CATG	1 cut(s)	143
FaiI	YATR	9 cut(s)	42, 71, 103, 114, 137, 141, 176, 222, 236
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	2 cut(s)	222, 262
Fsp4HI	GCNGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	35
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	1 cut(s)	143
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	98
Hpy188III	TCNNGA	3 cut(s)	80, 207, 247
HpyCH4V	TGCA	2 cut(s)	65, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	143
LpnPI	CCDG	5 cut(s)	31, 111, 192, 207, 232
MaeIII	GTNAC	1 cut(s)	104
MboII	GAAGA	1 cut(s)	68
MluCI	AATT	3 cut(s)	66, 154, 272
MseI	TTAA	2 cut(s)	167, 280
MslI	CAYNNNNRTG	1 cut(s)	111
MspI	CCGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	149
NlaIII	CATG	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	143
PinAI	ACCGGT	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	36
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	167, 280
SatI	GCNGC	1 cut(s)	35
SetI	ASST	2 cut(s)	55, 196
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	3 cut(s)	66, 154, 272
SsiI	CCGC	2 cut(s)	34, 109
TasI	AATT	3 cut(s)	66, 154, 272
TauI	GCSGC	1 cut(s)	37
Tru1I	TTAA	2 cut(s)	167, 280
Tru9I	TTAA	2 cut(s)	167, 280
TseFI	GTSAC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	17, 266
TspGWI	ACGGA	1 cut(s)	19
XceI	RCATGY	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.