Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011502

Physical Location & Seq

Genomic Coordinates Forward (+)

18663476 .. 18664461

Gene Structure 986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTTCGTATTTACGGCTTCCACTGATGCCAAAATTCCTTGGTCGGCTTGTGTGAAAACATATGAGGTGAGGGACTCGCAAGGTGTTGTGTGGGTTTGGATGTCTCATAAGACACCACCAAACCCCGCTAAGCTTCCTTGGTTTGAGAACTTTGACAGAGCCCGGTTCCAAGATACTTCAACAACGCATGAGCTTCCTTATGATCACTCCATACTTTTGGAGAACCTCATGGATCCAGCCCATGTTCCGATCTCACATGACAGACGGATCGGAGTGCTAAAAGGGAAGATGCTCAACCACCGCGTTTTGAGGTCACCGAACACACCGATCGAGGATTTGCAGTGGTGGGGAAAGACAACCGATCGTCCGCCTCCGGCTTCTTGCGCTTTGAAGCACCGTGTTCTCTTCAAAACAATCGAGAAATTGTTGACGACAAGACCGGGGAAACGCACTACTTCTCGGCCCGTCGTGGTCGAACATGCTCCCGCTGGACTTGTTGCAGGTGTATCGGCATCTTTGCCTCCTGCCAAGGGAGGCATTGGAACCATGCATGCTCCAAATTTGGCCAACCGGTATTTCCGGTATGTGGTTCATTGCAAAGAGTGCGAAATGTTGTCAAAGCTTTCCAAGCTTGGAAAAATTACCTTCGCTATTCTGTTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015031 GO:0015833 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

221

Amino Acids

24.92

Weight (kDa)

9.78

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24820
fragaria_vesca	FvH4_2g41330
malus_domestica	MD08G1051400.v1.1
prunus_persica	Prupe.1G397100_v2.0.a1 Prupe.1G397200_v2.0.a1 Prupe.1G397200_v2.0.a1 Prupe.1G397200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0299151
rosa_laevigata	RLG00000011459 RLG00000028023
rosa_multiflora	Rmu_sc0001434.1_g000017
rosa_roxburghii	Rroxscaffold_4G00298790 Rroxscaffold_7G00168970
rosa_rugosa	Rorug06G0285700 Rorug06G0285800
rosa_samantha	Rh6AG396700 Rh6BG405200 Rh6CG411200 Rh6DG397900
rosa_wichuraiana	Rw6G034730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	491
Acc36I	ACCTGC	1 cut(s)	491
AccII	CGCG	1 cut(s)	303
AciI	CCGC	4 cut(s)	126, 301, 368, 486
AclWI	GGATC	3 cut(s)	227, 240, 275
AcoI	YGGCCR	1 cut(s)	564
AcsI	RAATTY	2 cut(s)	33, 559
AfiI	CCNNNNNNNGG	2 cut(s)	530, 586
AgeI	ACCGGT	1 cut(s)	570
AgsI	TTSAA	3 cut(s)	180, 391, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	4 cut(s)	133, 193, 622, 631
AluI	AGCT	4 cut(s)	133, 193, 622, 631
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	3 cut(s)	227, 240, 275
AoxI	GGCC	2 cut(s)	461, 564
ApoI	RAATTY	2 cut(s)	33, 559
AsiGI	ACCGGT	1 cut(s)	570
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	462
AsuC2I	CCSGG	2 cut(s)	163, 441
AsuHPI	GGTGA	2 cut(s)	79, 306
BalI	TGGCCA	1 cut(s)	566
BamHI	GGATCC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	30
BcgI	CGANNNNNNTGC	2 cut(s)	489, 523
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	2 cut(s)	163, 441
BcoDI	GTCTC	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	491
BlpI	GCTNAGC	1 cut(s)	129
Bme1390I	CCNGG	2 cut(s)	163, 441
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	3 cut(s)	167, 234, 544
BmrFI	CCNGG	2 cut(s)	163, 441
BmsI	GCATC	3 cut(s)	16, 279, 521
Bpu1102I	GCTNAGC	1 cut(s)	129
BpuMI	CCSGG	2 cut(s)	163, 441
BsaJI	CCNNGG	4 cut(s)	38, 137, 440, 528
BsaWI	WCCGGW	2 cut(s)	570, 579
Bsc4I	CCNNNNNNNGG	2 cut(s)	530, 586
Bse118I	RCCGGY	1 cut(s)	570
Bse3DI	GCAATG	1 cut(s)	592
BseDI	CCNNGG	4 cut(s)	38, 137, 440, 528
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	2 cut(s)	530, 586
BseMI	GCAATG	1 cut(s)	592
Bsh1236I	CGCG	1 cut(s)	303
Bsh1285I	CGRYCG	2 cut(s)	330, 364
BshFI	GGCC	2 cut(s)	463, 566
BshTI	ACCGGT	1 cut(s)	570
BsiEI	CGRYCG	2 cut(s)	330, 364
BsiSI	CCGG	5 cut(s)	163, 374, 440, 571, 580
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	530, 586
BsmAI	GTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	463, 566
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	6 cut(s)	202, 232, 249, 267, 327, 361
Bsp1720I	GCTNAGC	1 cut(s)	129
BspACI	CCGC	4 cut(s)	126, 301, 368, 486
BspANI	GGCC	2 cut(s)	463, 566
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	3 cut(s)	167, 234, 544
BspMI	ACCTGC	1 cut(s)	491
BspPI	GGATC	3 cut(s)	227, 240, 275
BsrDI	GCAATG	1 cut(s)	592
BsrFI	RCCGGY	1 cut(s)	570
BssAI	RCCGGY	1 cut(s)	570
BssECI	CCNNGG	4 cut(s)	38, 137, 440, 528
BssMI	GATC	6 cut(s)	202, 232, 249, 267, 327, 361
BssT1I	CCWWGG	3 cut(s)	38, 137, 528
Bst4CI	ACNGT	1 cut(s)	398
Bst6I	CTCTTC	1 cut(s)	410
BstAPI	GCANNNNNTGC	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	1 cut(s)	129
BstEII	GGTNACC	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	6 cut(s)	205, 235, 252, 270, 330, 364
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	6 cut(s)	202, 232, 249, 267, 327, 361
BstMCI	CGRYCG	2 cut(s)	330, 364
BstMWI	GCNNNNNNNGC	3 cut(s)	383, 603, 628
BstNSI	RCATGY	2 cut(s)	482, 554
BstPI	GGTNACC	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	161, 439
BstUI	CGCG	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	232
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	463, 566
BtsCI	GGATG	1 cut(s)	105
BtsI	GCAGTG	1 cut(s)	347
BtsIMutI	CAGTG	2 cut(s)	21, 347
BveI	ACCTGC	1 cut(s)	491
Cac8I	GCNNGC	1 cut(s)	552
CfoI	GCGC	1 cut(s)	386
Cfr10I	RCCGGY	1 cut(s)	570
Cfr13I	GGNCC	1 cut(s)	462
CspAI	ACCGGT	1 cut(s)	570
CviAII	CATG	7 cut(s)	188, 229, 242, 257, 479, 547, 551
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	6 cut(s)	204, 234, 251, 269, 329, 363
DpnII	GATC	6 cut(s)	202, 232, 249, 267, 327, 361
EaeI	YGGCCR	1 cut(s)	564
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
EciI	GGCGGA	1 cut(s)	357
Eco130I	CCWWGG	3 cut(s)	38, 137, 528
Eco24I	GRGCYC	1 cut(s)	163
Eco91I	GGTNACC	1 cut(s)	312
EcoO65I	GGTNACC	1 cut(s)	312
EcoT14I	CCWWGG	3 cut(s)	38, 137, 528
EcoT22I	ATGCAT	1 cut(s)	552
EcoT38I	GRGCYC	1 cut(s)	163
ErhI	CCWWGG	3 cut(s)	38, 137, 528
FaeI	CATG	7 cut(s)	191, 232, 245, 260, 482, 550, 554
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	7 cut(s)	187, 228, 241, 256, 478, 546, 550
FauI	CCCGC	2 cut(s)	133, 493
FauNDI	CATATG	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	202
FokI	GGATG	1 cut(s)	112
FriOI	GRGCYC	1 cut(s)	163
GlaI	GCGC	1 cut(s)	385
HaeIII	GGCC	2 cut(s)	463, 566
HapII	CCGG	5 cut(s)	163, 374, 440, 571, 580
HhaI	GCGC	1 cut(s)	386
Hin1II	CATG	7 cut(s)	191, 232, 245, 260, 482, 550, 554
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HindIII	AAGCTT	3 cut(s)	131, 620, 629
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	5 cut(s)	163, 374, 440, 571, 580
HphI	GGTGA	2 cut(s)	79, 306
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	2 cut(s)	249, 272
Hpy188III	TCNNGA	1 cut(s)	418
Hpy8I	GTNNAC	1 cut(s)	429
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	1 cut(s)	655
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4V	TGCA	5 cut(s)	340, 500, 550, 597, 661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	383, 603, 628
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	7 cut(s)	191, 232, 245, 260, 482, 550, 554
HspAI	GCGC	1 cut(s)	384
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	6 cut(s)	202, 232, 249, 267, 327, 361
LmnI	GCTCC	2 cut(s)	487, 559
LpnPI	CCDG	9 cut(s)	176, 249, 387, 453, 474, 486, 537, 584, 593
LweI	GCATC	3 cut(s)	16, 279, 521
MaeIII	GTNAC	1 cut(s)	312
MalI	GATC	6 cut(s)	204, 234, 251, 269, 329, 363
MboI	GATC	6 cut(s)	202, 232, 249, 267, 327, 361
MboII	GAAGA	2 cut(s)	298, 397
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	4 cut(s)	33, 422, 559, 639
MluNI	TGGCCA	1 cut(s)	566
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	8 cut(s)	58, 63, 236, 303, 325, 381, 527, 531
Mox20I	TGGCCA	1 cut(s)	566
Mph1103I	ATGCAT	1 cut(s)	552
MscI	TGGCCA	1 cut(s)	566
Msp20I	TGGCCA	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	5 cut(s)	163, 374, 440, 571, 580
MspR9I	CCNGG	2 cut(s)	163, 441
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	3 cut(s)	383, 603, 628
NciI	CCSGG	2 cut(s)	163, 441
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	6 cut(s)	202, 232, 249, 267, 327, 361
NlaIII	CATG	7 cut(s)	191, 232, 245, 260, 482, 550, 554
NlaIV	GGNNCC	3 cut(s)	167, 234, 544
NmeAIII	GCCGAG	1 cut(s)	439
NmuCI	GTSAC	1 cut(s)	312
NsiI	ATGCAT	1 cut(s)	552
NspI	RCATGY	2 cut(s)	482, 554
PaeI	GCATGC	1 cut(s)	554
PaqCI	CACCTGC	1 cut(s)	491
PinAI	ACCGGT	1 cut(s)	570
Ple19I	CGATCG	2 cut(s)	330, 364
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PspEI	GGTNACC	1 cut(s)	312
PspN4I	GGNNCC	3 cut(s)	167, 234, 544
PspPI	GGNCC	1 cut(s)	462
PsuI	RGATCY	1 cut(s)	232
PvuI	CGATCG	2 cut(s)	330, 364
Sau3AI	GATC	6 cut(s)	202, 232, 249, 267, 327, 361
Sau96I	GGNCC	1 cut(s)	462
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	163, 441
SduI	GDGCHC	1 cut(s)	163
SfaNI	GCATC	3 cut(s)	16, 279, 521
SphI	GCATGC	1 cut(s)	554
Sse9I	AATT	4 cut(s)	33, 422, 559, 639
SsiI	CCGC	4 cut(s)	126, 301, 368, 486
StyD4I	CCNGG	2 cut(s)	161, 439
StyI	CCWWGG	3 cut(s)	38, 137, 528
TaaI	ACNGT	1 cut(s)	398
TaqI	TCGA	3 cut(s)	330, 417, 474
TasI	AATT	4 cut(s)	33, 422, 559, 639
TscAI	CASTG	2 cut(s)	28, 347
TseFI	GTSAC	1 cut(s)	312
Tsp45I	GTSAC	1 cut(s)	312
TspDTI	ATGAA	1 cut(s)	581
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	2 cut(s)	28, 347
XapI	RAATTY	2 cut(s)	33, 559
XceI	RCATGY	2 cut(s)	482, 554
Zsp2I	ATGCAT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.