Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0011502

Physical Location & Seq

Genomic Coordinates Forward (+)

59390583 .. 59392466

Gene Structure 1884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G034730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1662 bp

ATGGCTTTGTTTCATCCATTTCTTTCACACTATTCCACCTCTCTCCTGTCCCCAGTAACCCACAAACAATTAGGAGCTACACAACCACAGCCACAGCCACTCAAACTAGTCCCGGTTGCACACAGGCCGCCATTCAACGTCCCAACACGAAAGACCAAGTGCGGTGCAGTCGCAGACATGAAACCTGCAGCACCAGCTCCACTAGAAGATGATGATGAAGATCACAAGGTCCTGGTAGGTCCTACCAGCGAGCAAGAGCGGAGAGGAGATAGGATCGTGGCGGACTATGATTGGACGGAGGAATGGTACCCTCTGTACCTCACCCAGGACATTCCAGAGGATGCACCTTTGGGTCTGACTGTGTTCGATAAGCAACTAGTTCTCTACAGAGACGGCAATGGTGTGCTTCAGTGTTACCAAGATCGCTGCCCCCACAGGTTGGCGAAATTATCAGAAGGCCAACTGATTGATGGGAGACTGGAATGTTTATATCATGGTTGGCAATTTGAAGGTGCAGGAAAATGTGTCAAGATCCCTCAGCTTCCAGCTGATGCCAAAATTCCTAGGTCGGCTTGTGTGAAAACATATGAGGTGAGGGACTCGCAAGGTGTTGTGTGGGTTTGGATGTCCCATAAGACACCACCAAACCCTGCTAAGATTCCTTGGTTTGAGAACTTCGACAGGCCAGGGTTCCAAGATACTTCAACAACCCATGAGCTTCCTTATGATCACTCCATACTTTTGGAGAACCTCATGGATCCAGCCCATGTTCCAATCTCACATGACAGGACAGACTGGAGTGCTAAAAGGGAAGATGCTCAACCACTGCGTTTTGAGGTCACCGAACGCACCGACCGAGGATTTGCAGGCTGGTGGGGGAAGACAACTGATCAGTCCGCCTCCAGCTTCTTGCGCTTTGAAGCACCGTGTTCTCTTCAAAACAATCGAGAAATTGTTGACGACAAGACTGGGGAAACGCACTACTTCTCAGGTCTCTTTCTTTGTAGACCAACTGGACAAGGGAAGTCCATGCTCATTGTGAGGTTTGGAGGAACAAAAAGGTCTCCTCTGGCAAAATTGTTTCCCAAATGGTACTTCCATCAGAATGCAGGAAAGGTGTTTGAGCAAGACATGGGATTCCTTTCTTCTCAGAATGAGATACTTATCAAAGAAAAAGTGCCCACCAAGAACCTCTACCTTAACTTGAAATCCTCAGATACATGGGTAGCAGAATACAGAAAATGGATGGACAAAGTTGGGCATGGGATGCCATACCACTTTGGCCACAGCACAATATCGTTGCCCAAAGAGCCTGCCGTGGTCGAACATGCTCCTGCTGGACTTGTTGCAGGTGTATCGGCATCTTTGCCTGCCAAGGGAGGCATTGGAACTATGCATGCTCCAAATTTGGCCAACCGGTATTTCCGGCATGTGATTCATTGCAAAGAGTGCAGAAATGTTGTCAAAGCTTTCCAAGCTTGGAAGAATTACCTTTCTGCTATTGCTGTTGCATTGACCGCTTTGGCAATTCTAATATCCGGAAGGCAATGGAAGGCTCTTCTGTTAGTCTCAGCAGCCGTATGCTCCGGCGGAGTTTATGCATGCTCGGCTGCTGTTACATTGAACACAACAAATTTCATTAGGACACATAGGAGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015031 GO:0015833 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

553

Amino Acids

62.11

Weight (kDa)

8.67

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rieske	PF00355	101 - 187	2.3e-24	Rieske [2Fe-2S] domain
PaO	PF08417	306 - 392	1.3e-22	Pheophorbide a oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24820
fragaria_vesca	FvH4_2g41330
malus_domestica	MD08G1051400.v1.1
prunus_persica	Prupe.1G397100_v2.0.a1 Prupe.1G397200_v2.0.a1 Prupe.1G397200_v2.0.a1 Prupe.1G397200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0299151
rosa_laevigata	RLG00000011459 RLG00000028023
rosa_multiflora	Rmu_sc0001434.1_g000017
rosa_roxburghii	Rroxscaffold_4G00298790 Rroxscaffold_7G00168970
rosa_rugosa	Rorug06G0285700 Rorug06G0285800
rosa_samantha	Rh6AG396700 Rh6BG405200 Rh6CG411200 Rh6DG397900
rosa_wichuraiana	Rw6G034730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1340
Acc36I	ACCTGC	2 cut(s)	193, 1340
Acc65I	GGTACC	1 cut(s)	306
AccB1I	GGYRCC	1 cut(s)	306
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccBSI	CCGCTC	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	1006
AccIII	TCCGGA	1 cut(s)	1538
AciI	CCGC	7 cut(s)	128, 162, 259, 281, 897, 1518, 1590
AclWI	GGATC	4 cut(s)	281, 526, 752, 765
AcoI	YGGCCR	2 cut(s)	1282, 1410
AcsI	RAATTY	3 cut(s)	558, 1405, 1633
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	3 cut(s)	308, 317, 1094
AfiI	CCNNNNNNNGG	3 cut(s)	325, 439, 1376
AgeI	ACCGGT	1 cut(s)	1416
AgsI	TTSAA	7 cut(s)	136, 509, 705, 920, 938, 1207, 1624
AhlI	ACTAGT	2 cut(s)	106, 376
AjnI	CCWGG	3 cut(s)	231, 324, 685
AjuI	GAANNNNNNNTTGG	4 cut(s)	1079, 1111, 1406, 1438
AluBI	AGCT	8 cut(s)	77, 197, 541, 548, 718, 906, 1469, 1478
AluI	AGCT	8 cut(s)	77, 197, 541, 548, 718, 906, 1469, 1478
Alw26I	GTCTC	5 cut(s)	384, 469, 998, 1068, 1573
AlwI	GGATC	4 cut(s)	281, 526, 752, 765
Aor13HI	TCCGGA	1 cut(s)	1538
AoxI	GGCC	5 cut(s)	125, 457, 683, 1282, 1410
ApeKI	GCWGC	4 cut(s)	188, 426, 1574, 1610
ApoI	RAATTY	3 cut(s)	558, 1405, 1633
ArsI	GACNNNNNNTTYG	2 cut(s)	845, 877
AsiGI	ACCGGT	1 cut(s)	1416
Asp718I	GGTACC	1 cut(s)	306
AspA2I	CCTAGG	1 cut(s)	563
AspLEI	GCGC	1 cut(s)	915
AspS9I	GGNCC	2 cut(s)	229, 239
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	3 cut(s)	313, 604, 832
AvaII	GGWCC	2 cut(s)	229, 239
AvrII	CCTAGG	1 cut(s)	563
BaeGI	GKGCMC	1 cut(s)	1182
BaeI	ACNNNNGTAYC	2 cut(s)	1209, 1242
BalI	TGGCCA	2 cut(s)	1284, 1412
BamHI	GGATCC	1 cut(s)	757
BanI	GGYRCC	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	887
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	4 cut(s)	200, 413, 1586, 1597
BccI	CCATC	3 cut(s)	464, 1107, 1240
BceAI	ACGGC	3 cut(s)	409, 1301, 1562
BcgI	CGANNNNNNTGC	2 cut(s)	1338, 1372
BciT130I	CCWGG	3 cut(s)	233, 326, 687
BclI	TGATCA	2 cut(s)	727, 889
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	5 cut(s)	384, 469, 998, 1068, 1573
BcuI	ACTAGT	2 cut(s)	106, 376
BfaI	CTAG	4 cut(s)	107, 203, 377, 564
BfmI	CTRYAG	2 cut(s)	186, 385
BfuAI	ACCTGC	2 cut(s)	193, 1340
BisI	GCNGC	5 cut(s)	128, 189, 427, 1575, 1611
BlnI	CCTAGG	1 cut(s)	563
BlsI	GCNGC	5 cut(s)	129, 190, 428, 1576, 1612
Bme1390I	CCNGG	4 cut(s)	113, 233, 326, 687
Bme18I	GGWCC	2 cut(s)	229, 239
BmgT120I	GGNCC	2 cut(s)	229, 239
BmiI	GGNNCC	3 cut(s)	308, 692, 759
BmrFI	CCNGG	4 cut(s)	113, 233, 326, 687
BmrI	ACTGGG	2 cut(s)	47, 978
BmsI	GCATC	5 cut(s)	331, 541, 805, 1257, 1370
BmuI	ACTGGG	2 cut(s)	47, 978
BpiI	GAAGAC	1 cut(s)	887
BpmI	CTGGAG	2 cut(s)	817, 886
Bpu10I	CCTNAGC	1 cut(s)	537
BpuMI	CCSGG	1 cut(s)	113
BsaBI	GATNNNNATC	2 cut(s)	219, 1163
BsaI	GGTCTC	2 cut(s)	998, 1068
BsaJI	CCNNGG	7 cut(s)	324, 563, 662, 686, 856, 1317, 1374
BsaWI	WCCGGW	2 cut(s)	1416, 1538
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	3 cut(s)	325, 439, 1376
Bse118I	RCCGGY	1 cut(s)	1416
Bse1I	ACTGG	5 cut(s)	53, 483, 800, 973, 1018
Bse3DI	GCAATG	3 cut(s)	403, 1438, 1553
Bse8I	GATNNNNATC	2 cut(s)	219, 1163
BseAI	TCCGGA	1 cut(s)	1538
BseBI	CCWGG	3 cut(s)	233, 326, 687
BseDI	CCNNGG	7 cut(s)	324, 563, 662, 686, 856, 1317, 1374
BseGI	GGATG	5 cut(s)	13, 346, 630, 1251, 1272
BseJI	GATNNNNATC	2 cut(s)	219, 1163
BseLI	CCNNNNNNNGG	3 cut(s)	325, 439, 1376
BseMI	GCAATG	3 cut(s)	403, 1438, 1553
BseMII	CTCAG	5 cut(s)	551, 1002, 1163, 1227, 1584
BseNI	ACTGG	5 cut(s)	53, 483, 800, 973, 1018
BseRI	GAGGAG	2 cut(s)	279, 1056
BseSI	GKGCMC	1 cut(s)	1182
BseXI	GCAGC	4 cut(s)	200, 413, 1586, 1597
BsgI	GTGCAG	3 cut(s)	186, 534, 1471
Bsh1285I	CGRYCG	1 cut(s)	856
BshFI	GGCC	5 cut(s)	127, 459, 685, 1284, 1412
BshNI	GGYRCC	1 cut(s)	306
BshTI	ACCGGT	1 cut(s)	1416
BsiEI	CGRYCG	1 cut(s)	856
BsiSI	CCGG	5 cut(s)	113, 1417, 1426, 1539, 1587
BslFI	GGGAC	5 cut(s)	34, 95, 125, 611, 613
BslI	CCNNNNNNNGG	3 cut(s)	325, 439, 1376
BsmAI	GTCTC	5 cut(s)	384, 469, 998, 1068, 1573
BsmBI	CGTCTC	1 cut(s)	384
BsmFI	GGGAC	5 cut(s)	34, 95, 125, 611, 613
BsmI	GAATGC	1 cut(s)	1111
BsnI	GGCC	5 cut(s)	127, 459, 685, 1284, 1412
Bso31I	GGTCTC	2 cut(s)	998, 1068
Bsp1286I	GDGCHC	1 cut(s)	1182
Bsp13I	TCCGGA	1 cut(s)	1538
Bsp143I	GATC	7 cut(s)	220, 273, 421, 531, 727, 757, 889
BspACI	CCGC	7 cut(s)	128, 162, 259, 281, 897, 1518, 1590
BspANI	GGCC	5 cut(s)	127, 459, 685, 1284, 1412
BspCNI	CTCAG	5 cut(s)	550, 1001, 1162, 1226, 1583
BspEI	TCCGGA	1 cut(s)	1538
BspLI	GGNNCC	3 cut(s)	308, 692, 759
BspMAI	CTGCAG	1 cut(s)	190
BspMI	ACCTGC	2 cut(s)	193, 1340
BspPI	GGATC	4 cut(s)	281, 526, 752, 765
BspQI	GCTCTTC	1 cut(s)	1563
BspT107I	GGYRCC	1 cut(s)	306
BspTNI	GGTCTC	2 cut(s)	998, 1068
BsrBI	CCGCTC	1 cut(s)	259
BsrDI	GCAATG	3 cut(s)	403, 1438, 1553
BsrFI	RCCGGY	1 cut(s)	1416
BsrI	ACTGG	5 cut(s)	53, 483, 800, 973, 1018
BssAI	RCCGGY	1 cut(s)	1416
BssECI	CCNNGG	7 cut(s)	324, 563, 662, 686, 856, 1317, 1374
BssMI	GATC	7 cut(s)	220, 273, 421, 531, 727, 757, 889
BssT1I	CCWWGG	3 cut(s)	563, 662, 1374
Bst2UI	CCWGG	3 cut(s)	233, 326, 687
Bst4CI	ACNGT	2 cut(s)	361, 927
Bst6I	CTCTTC	2 cut(s)	939, 1563
BstAPI	GCANNNNNTGC	2 cut(s)	1267, 1449
BstC8I	GCNNGC	6 cut(s)	251, 868, 1314, 1371, 1398, 1603
BstDEI	CTNAG	6 cut(s)	537, 654, 988, 1149, 1213, 1570
BstDSI	CCRYGG	1 cut(s)	1317
BstEII	GGTNACC	1 cut(s)	838
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstF5I	GGATG	5 cut(s)	13, 346, 630, 1251, 1272
BstHHI	GCGC	1 cut(s)	915
BstKTI	GATC	7 cut(s)	223, 276, 424, 534, 730, 760, 892
BstMAI	GTCTC	5 cut(s)	384, 469, 998, 1068, 1573
BstMBI	GATC	7 cut(s)	220, 273, 421, 531, 727, 757, 889
BstMCI	CGRYCG	1 cut(s)	856
BstMWI	GCNNNNNNNGC	8 cut(s)	194, 912, 1267, 1309, 1449, 1475, 1517, 1607
BstNI	CCWGG	3 cut(s)	233, 326, 687
BstNSI	RCATGY	4 cut(s)	1331, 1400, 1433, 1605
BstPI	GGTNACC	1 cut(s)	838
BstSCI	CCNGG	4 cut(s)	111, 231, 324, 685
BstSFI	CTRYAG	2 cut(s)	186, 385
BstSLI	GKGCMC	1 cut(s)	1182
BstV1I	GCAGC	4 cut(s)	200, 413, 1586, 1597
BstV2I	GAAGAC	1 cut(s)	887
BstX2I	RGATCY	2 cut(s)	531, 757
BstXI	CCANNNNNNTGG	1 cut(s)	742
BstYI	RGATCY	2 cut(s)	531, 757
BsuRI	GGCC	5 cut(s)	127, 459, 685, 1284, 1412
BtgI	CCRYGG	1 cut(s)	1317
BtsCI	GGATG	5 cut(s)	13, 346, 630, 1251, 1272
BtsI	GCAGTG	1 cut(s)	824
BtsIMutI	CAGTG	2 cut(s)	416, 824
BveI	ACCTGC	2 cut(s)	193, 1340
Cac8I	GCNNGC	6 cut(s)	251, 868, 1314, 1371, 1398, 1603
CfoI	GCGC	1 cut(s)	915
Cfr10I	RCCGGY	1 cut(s)	1416
Cfr13I	GGNCC	2 cut(s)	229, 239
Csp6I	GTAC	3 cut(s)	307, 316, 1093
CspAI	ACCGGT	1 cut(s)	1416
CviQI	GTAC	3 cut(s)	307, 316, 1093
DdeI	CTNAG	6 cut(s)	537, 654, 988, 1149, 1213, 1570
DpnI	GATC	7 cut(s)	222, 275, 423, 533, 729, 759, 891
DpnII	GATC	7 cut(s)	220, 273, 421, 531, 727, 757, 889
EaeI	YGGCCR	2 cut(s)	1282, 1410
Eam1104I	CTCTTC	2 cut(s)	939, 1563
EarI	CTCTTC	2 cut(s)	939, 1563
EciI	GGCGGA	3 cut(s)	296, 886, 1605
Eco130I	CCWWGG	3 cut(s)	563, 662, 1374
Eco31I	GGTCTC	2 cut(s)	998, 1068
Eco47I	GGWCC	2 cut(s)	229, 239
Eco57I	CTGAAG	1 cut(s)	392
Eco91I	GGTNACC	1 cut(s)	838
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoO109I	RGGNCCY	2 cut(s)	229, 239
EcoO65I	GGTNACC	1 cut(s)	838
EcoRII	CCWGG	3 cut(s)	231, 324, 685
EcoT14I	CCWWGG	3 cut(s)	563, 662, 1374
EcoT22I	ATGCAT	2 cut(s)	1398, 1603
ErhI	CCWWGG	3 cut(s)	563, 662, 1374
Esp3I	CGTCTC	1 cut(s)	384
FaqI	GGGAC	5 cut(s)	34, 95, 125, 611, 613
FauNDI	CATATG	1 cut(s)	586
FbaI	TGATCA	2 cut(s)	727, 889
FblI	GTMKAC	1 cut(s)	1006
Fnu4HI	GCNGC	5 cut(s)	128, 189, 427, 1575, 1611
FokI	GGATG	4 cut(s)	353, 637, 1258, 1279
Fsp4HI	GCNGC	5 cut(s)	128, 189, 427, 1575, 1611
FspBI	CTAG	4 cut(s)	107, 203, 377, 564
GlaI	GCGC	1 cut(s)	914
GluI	GCNGC	5 cut(s)	128, 189, 427, 1575, 1611
GsuI	CTGGAG	2 cut(s)	817, 886
HaeIII	GGCC	5 cut(s)	127, 459, 685, 1284, 1412
HapII	CCGG	5 cut(s)	113, 1417, 1426, 1539, 1587
HhaI	GCGC	1 cut(s)	915
Hin6I	GCGC	1 cut(s)	913
HinP1I	GCGC	1 cut(s)	913
HincII	GTYRAC	1 cut(s)	958
HindII	GTYRAC	1 cut(s)	958
HindIII	AAGCTT	2 cut(s)	1467, 1476
HinfI	GANTC	4 cut(s)	599, 658, 1137, 1435
HpaII	CCGG	5 cut(s)	113, 1417, 1426, 1539, 1587
HphI	GGTGA	3 cut(s)	313, 604, 832
Hpy166II	GTNNAC	2 cut(s)	958, 1007
Hpy188I	TCNGA	5 cut(s)	357, 454, 1104, 1152, 1216
Hpy188III	TCNNGA	4 cut(s)	335, 529, 947, 1539
Hpy8I	GTNNAC	2 cut(s)	958, 1007
HpyAV	CCTTC	4 cut(s)	449, 503, 1536, 1546
HpyCH4III	ACNGT	2 cut(s)	361, 927
HpyCH4IV	ACGT	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	8 cut(s)	194, 912, 1267, 1309, 1449, 1475, 1517, 1607
HpyF3I	CTNAG	6 cut(s)	537, 654, 988, 1149, 1213, 1570
HpySE526I	ACGT	1 cut(s)	138
HspAI	GCGC	1 cut(s)	913
Kpn2I	TCCGGA	1 cut(s)	1538
KpnI	GGTACC	1 cut(s)	310
Ksp22I	TGATCA	2 cut(s)	727, 889
Kzo9I	GATC	7 cut(s)	220, 273, 421, 531, 727, 757, 889
LguI	GCTCTTC	1 cut(s)	1563
LmnI	GCTCC	5 cut(s)	74, 202, 1336, 1405, 1589
Lsp1109I	GCAGC	4 cut(s)	200, 413, 1586, 1597
LweI	GCATC	5 cut(s)	331, 541, 805, 1257, 1370
MaeI	CTAG	4 cut(s)	107, 203, 377, 564
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	4 cut(s)	55, 413, 838, 1615
MalI	GATC	7 cut(s)	222, 275, 423, 533, 729, 759, 891
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	7 cut(s)	220, 273, 421, 531, 727, 757, 889
MboII	GAAGA	8 cut(s)	218, 230, 824, 892, 926, 1137, 1495, 1550
MflI	RGATCY	2 cut(s)	531, 757
MhlI	GDGCHC	1 cut(s)	1182
MlsI	TGGCCA	2 cut(s)	1284, 1412
MluNI	TGGCCA	2 cut(s)	1284, 1412
MlyI	GAGTC	1 cut(s)	593
Mox20I	TGGCCA	2 cut(s)	1284, 1412
Mph1103I	ATGCAT	2 cut(s)	1398, 1603
MroI	TCCGGA	1 cut(s)	1538
MscI	TGGCCA	2 cut(s)	1284, 1412
MseI	TTAA	1 cut(s)	1200
MslI	CAYNNNNRTG	1 cut(s)	1104
Msp20I	TGGCCA	2 cut(s)	1284, 1412
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	5 cut(s)	113, 1417, 1426, 1539, 1587
MspR9I	CCNGG	4 cut(s)	113, 233, 326, 687
Mva1269I	GAATGC	1 cut(s)	1111
MvaI	CCWGG	3 cut(s)	233, 326, 687
MwoI	GCNNNNNNNGC	8 cut(s)	194, 912, 1267, 1309, 1449, 1475, 1517, 1607
NciI	CCSGG	1 cut(s)	113
NdeI	CATATG	1 cut(s)	586
NdeII	GATC	7 cut(s)	220, 273, 421, 531, 727, 757, 889
NlaIV	GGNNCC	3 cut(s)	308, 692, 759
NmeAIII	GCCGAG	1 cut(s)	1586
NmuCI	GTSAC	1 cut(s)	838
NsiI	ATGCAT	2 cut(s)	1398, 1603
NspI	RCATGY	4 cut(s)	1331, 1400, 1433, 1605
PaeI	GCATGC	2 cut(s)	1400, 1605
PaqCI	CACCTGC	1 cut(s)	1340
PciSI	GCTCTTC	1 cut(s)	1563
PcsI	WCGNNNNNNNCGW	1 cut(s)	853
PctI	GAATGC	1 cut(s)	1111
PfeI	GAWTC	3 cut(s)	658, 1137, 1435
PflMI	CCANNNNNTGG	1 cut(s)	439
PinAI	ACCGGT	1 cut(s)	1416
PkrI	GCNGC	5 cut(s)	129, 190, 428, 1576, 1612
PleI	GAGTC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	593
PpuMI	RGGWCCY	2 cut(s)	229, 239
Psp5II	RGGWCCY	2 cut(s)	229, 239
Psp6I	CCWGG	3 cut(s)	231, 324, 685
PspEI	GGTNACC	1 cut(s)	838
PspGI	CCWGG	3 cut(s)	231, 324, 685
PspN4I	GGNNCC	3 cut(s)	308, 692, 759
PspPI	GGNCC	2 cut(s)	229, 239
PspPPI	RGGWCCY	2 cut(s)	229, 239
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	2 cut(s)	531, 757
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	3 cut(s)	308, 317, 1094
RsaNI	GTAC	3 cut(s)	307, 316, 1093
RseI	CAYNNNNRTG	1 cut(s)	1104
SapI	GCTCTTC	1 cut(s)	1563
SaqAI	TTAA	1 cut(s)	1200
SatI	GCNGC	5 cut(s)	128, 189, 427, 1575, 1611
Sau3AI	GATC	7 cut(s)	220, 273, 421, 531, 727, 757, 889
Sau96I	GGNCC	2 cut(s)	229, 239
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	4 cut(s)	113, 233, 326, 687
SduI	GDGCHC	1 cut(s)	1182
SfaNI	GCATC	5 cut(s)	331, 541, 805, 1257, 1370
SfcI	CTRYAG	2 cut(s)	186, 385
SinI	GGWCC	2 cut(s)	229, 239
SmiMI	CAYNNNNRTG	1 cut(s)	1104
SpeI	ACTAGT	2 cut(s)	106, 376
SphI	GCATGC	2 cut(s)	1400, 1605
SsiI	CCGC	7 cut(s)	128, 162, 259, 281, 897, 1518, 1590
SspMI	CTAG	4 cut(s)	107, 203, 377, 564
StyD4I	CCNGG	4 cut(s)	111, 231, 324, 685
StyI	CCWWGG	3 cut(s)	563, 662, 1374
TaaI	ACNGT	2 cut(s)	361, 927
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	4 cut(s)	366, 678, 946, 1323
TaqII	GACCGA	1 cut(s)	870
TauI	GCSGC	1 cut(s)	130
TfiI	GAWTC	3 cut(s)	658, 1137, 1435
Tru1I	TTAA	1 cut(s)	1200
Tru9I	TTAA	1 cut(s)	1200
TscAI	CASTG	2 cut(s)	416, 831
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	4 cut(s)	188, 426, 1574, 1610
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	4 cut(s)	194, 231, 1427, 1627
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	2 cut(s)	416, 831
Van91I	CCANNNNNTGG	1 cut(s)	439
VpaK11BI	GGWCC	2 cut(s)	229, 239
XagI	CCTNNNNNAGG	1 cut(s)	323
XapI	RAATTY	3 cut(s)	558, 1405, 1633
XceI	RCATGY	4 cut(s)	1331, 1400, 1433, 1605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	467
XmaJI	CCTAGG	1 cut(s)	563
XmiI	GTMKAC	1 cut(s)	1006
XspI	CTAG	4 cut(s)	107, 203, 377, 564
Zsp2I	ATGCAT	2 cut(s)	1398, 1603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.