Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0011502

Physical Location & Seq

Genomic Coordinates Forward (+)

59578453 .. 59580658

Gene Structure 2206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG396700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1659 bp

ATGGCTTTGTTTCATCCATTTCTTTCACACTATTCCACCTCTCTCCTGTCCCCAGTAACCCACAAACAATTAGGAGCTACACAACCACAGCCACTCAAACTAGTCCCGGTTGCACACAGGCCGCCATTCAACGTCCCAACACGAAAGACCAAGTGCGGTGCAGTCGCAGACATCAAACCTGCAGCACCAGCTCCACTAGAAGATGATGATGATGAAGATCACAAGGTCCTGGTAGGTCCTACCAGCGAGCAAGAGCGGAGAGGAGATAGGATCGTGGCGGACTATGATTGGACGGAGGAATGGTACCCTCTGTACCTCACCCAGGACATTCCAGAAGATGCACCTTTGGGTCTGACTGTGTTCGATAAGCAACTTGTTCTCTACAGAGACGGCAATGGTGTGCTTCAGTGTTACCAAGATCGCTGCCCCCACAGGTTGGCGAAATTATCAGAAGGCCAACTGATTGATGGGAGACTGGAATGTTTATATCATGGTTGGCAATTTGAAGGTGCAGGAAAATGTGTCAAGATCCCTCAGCTTCCAGCTGATGCCAAAATTCCTAGGTCGGCTTGTGTGAAAACATACGAGGTGAGGGACTCGCAAGGTGTTGTGTGGGTTTGGATGTCCCATAAGACACCGCCAAACCCTGCTAAGATTCCTTGGTTTGAGAACTTTGACAGGCCAGGGTTCCAAGATACTTCAACAACCCATGAGCTTCCTTATGATCACTCCATACTTTTGGAGAACCTCATGGATCCAGCCCATGTTCCAATCTCACATGACAGGACAGACTGGAGTGCTAAAAGGGAAGATGCTCAACCACTGCGTTTTGAGGTCACCGAACGCACCGACCGAGGATTTGCAGGCTGGTGGGGGAAGACAACTGATCAGTCCGCCTCCAGCTTCTTGCGCTTTGAAGCACCGTGTTCTCTTCAAAACAATCGAGAAATTGTTGACGACAAGACTGGGGAAACGCACTACTTCTCAGGTCTCTTTCTTTGTAGACCAACTGGACAAGGGAAGTCCATGCTCATTGTGAGGTTTGGAGGAACAAAAAGGTCTCCTCTGGCAAAATTGTTTCCCAAATGGTACTTCCATCAGAATGCAGGAAAGGTGTTTGAGCAAGACATGGGATTCCTTTCTTCTCAGAATGAGATACTTATCAAAGAAAAAGTGCCCACCAAGAACCTCTACCTTAACTTGAAATCCTCAGATACATGGGTAGCAGAATACAGAAAATGGATGGACAAAGTTGGGCATGGGATGCCTTACCACTTTGGCCACAGCACAATATCGTTTCCCAAAGAGCCTGCCGTGGTCGAACATGCTCCTGCTGGACTTGTTGCAGGTGTATCGGCATCTTTGCCTGCCAAGGGAGGCATTGGAACTATGCATGCTCCAAATTTGGCCAACCGGTATTTCCGGCATGTGGTTCATTGCAAAGAGTGCAGAAATGTTGTCAAAGCTTTCCAAGCTTGGAAAAATTACCTTTCTGCTGTTGCTGTTGCATTGACCGCTTTGGCAATTCTAATCTCCGGAAGGCAATGGAAGGCTCTTCTGTTAGTATCAGCAGCCGTATGCTCCGGCGGAGTTTATGCGTGCTCGGCTGCTGTTGCATTGAACACAACAAATTTCATTAGGACACATAGGAGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015031 GO:0015833 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

552

Amino Acids

61.95

Weight (kDa)

8.57

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rieske	PF00355	100 - 186	2.3e-24	Rieske [2Fe-2S] domain
PaO	PF08417	305 - 391	1.3e-22	Pheophorbide a oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24820
fragaria_vesca	FvH4_2g41330
malus_domestica	MD08G1051400.v1.1
prunus_persica	Prupe.1G397100_v2.0.a1 Prupe.1G397200_v2.0.a1 Prupe.1G397200_v2.0.a1 Prupe.1G397200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0299151
rosa_laevigata	RLG00000011459 RLG00000028023
rosa_multiflora	Rmu_sc0001434.1_g000017
rosa_roxburghii	Rroxscaffold_4G00298790 Rroxscaffold_7G00168970
rosa_rugosa	Rorug06G0285700 Rorug06G0285800
rosa_samantha	Rh6AG396700 Rh6BG405200 Rh6CG411200 Rh6DG397900
rosa_wichuraiana	Rw6G034730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1337
Acc36I	ACCTGC	2 cut(s)	187, 1337
Acc65I	GGTACC	1 cut(s)	303
AccB1I	GGYRCC	1 cut(s)	303
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccBSI	CCGCTC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	1003
AccIII	TCCGGA	1 cut(s)	1535
AciI	CCGC	8 cut(s)	122, 156, 256, 278, 638, 894, 1515, 1587
AclWI	GGATC	4 cut(s)	278, 523, 749, 762
AcoI	YGGCCR	2 cut(s)	1279, 1407
AcsI	RAATTY	3 cut(s)	555, 1402, 1630
AcuI	CTGAAG	1 cut(s)	389
AfaI	GTAC	3 cut(s)	305, 314, 1091
AfiI	CCNNNNNNNGG	4 cut(s)	322, 436, 1373, 1429
AgeI	ACCGGT	1 cut(s)	1413
AgsI	TTSAA	7 cut(s)	130, 506, 702, 917, 935, 1204, 1621
AhlI	ACTAGT	1 cut(s)	100
AjnI	CCWGG	3 cut(s)	228, 321, 682
AjuI	GAANNNNNNNTTGG	4 cut(s)	1076, 1108, 1403, 1435
AluBI	AGCT	8 cut(s)	77, 191, 538, 545, 715, 903, 1466, 1475
AluI	AGCT	8 cut(s)	77, 191, 538, 545, 715, 903, 1466, 1475
Alw21I	GWGCWC	1 cut(s)	1604
Alw26I	GTCTC	4 cut(s)	381, 466, 995, 1065
AlwI	GGATC	4 cut(s)	278, 523, 749, 762
Aor13HI	TCCGGA	1 cut(s)	1535
AoxI	GGCC	5 cut(s)	119, 454, 680, 1279, 1407
ApeKI	GCWGC	4 cut(s)	182, 423, 1571, 1607
ApoI	RAATTY	3 cut(s)	555, 1402, 1630
ArsI	GACNNNNNNTTYG	2 cut(s)	842, 874
AsiGI	ACCGGT	1 cut(s)	1413
Asp718I	GGTACC	1 cut(s)	303
AspA2I	CCTAGG	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	912
AspS9I	GGNCC	2 cut(s)	226, 236
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	3 cut(s)	310, 601, 829
AvaII	GGWCC	2 cut(s)	226, 236
AvrII	CCTAGG	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	1179
BaeI	ACNNNNGTAYC	2 cut(s)	1206, 1239
BalI	TGGCCA	2 cut(s)	1281, 1409
BamHI	GGATCC	1 cut(s)	754
BanI	GGYRCC	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	884
Bbv12I	GWGCWC	1 cut(s)	1604
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	4 cut(s)	194, 410, 1583, 1594
BccI	CCATC	3 cut(s)	461, 1104, 1237
BceAI	ACGGC	3 cut(s)	406, 1298, 1559
BcgI	CGANNNNNNTGC	2 cut(s)	1335, 1369
BciT130I	CCWGG	3 cut(s)	230, 323, 684
BclI	TGATCA	2 cut(s)	724, 886
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	4 cut(s)	381, 466, 995, 1065
BcuI	ACTAGT	1 cut(s)	100
BfaI	CTAG	3 cut(s)	101, 197, 561
BfmI	CTRYAG	2 cut(s)	180, 382
BfuAI	ACCTGC	2 cut(s)	187, 1337
BisI	GCNGC	5 cut(s)	122, 183, 424, 1572, 1608
BlnI	CCTAGG	1 cut(s)	560
BlsI	GCNGC	5 cut(s)	123, 184, 425, 1573, 1609
Bme1390I	CCNGG	4 cut(s)	107, 230, 323, 684
Bme18I	GGWCC	2 cut(s)	226, 236
BmgT120I	GGNCC	2 cut(s)	226, 236
BmiI	GGNNCC	3 cut(s)	305, 689, 756
BmrFI	CCNGG	4 cut(s)	107, 230, 323, 684
BmrI	ACTGGG	2 cut(s)	47, 975
BmsI	GCATC	5 cut(s)	328, 538, 802, 1254, 1367
BmuI	ACTGGG	2 cut(s)	47, 975
BpiI	GAAGAC	1 cut(s)	884
BpmI	CTGGAG	2 cut(s)	814, 883
Bpu10I	CCTNAGC	1 cut(s)	534
BpuMI	CCSGG	1 cut(s)	107
BsaBI	GATNNNNATC	2 cut(s)	216, 1160
BsaI	GGTCTC	2 cut(s)	995, 1065
BsaJI	CCNNGG	7 cut(s)	321, 560, 659, 683, 853, 1314, 1371
BsaWI	WCCGGW	2 cut(s)	1413, 1535
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	4 cut(s)	322, 436, 1373, 1429
Bse118I	RCCGGY	1 cut(s)	1413
Bse1I	ACTGG	5 cut(s)	53, 480, 797, 970, 1015
Bse3DI	GCAATG	3 cut(s)	400, 1435, 1550
Bse8I	GATNNNNATC	2 cut(s)	216, 1160
BseAI	TCCGGA	1 cut(s)	1535
BseBI	CCWGG	3 cut(s)	230, 323, 684
BseDI	CCNNGG	7 cut(s)	321, 560, 659, 683, 853, 1314, 1371
BseGI	GGATG	4 cut(s)	13, 627, 1248, 1269
BseJI	GATNNNNATC	2 cut(s)	216, 1160
BseLI	CCNNNNNNNGG	4 cut(s)	322, 436, 1373, 1429
BseMI	GCAATG	3 cut(s)	400, 1435, 1550
BseMII	CTCAG	4 cut(s)	548, 999, 1160, 1224
BseNI	ACTGG	5 cut(s)	53, 480, 797, 970, 1015
BseRI	GAGGAG	2 cut(s)	276, 1053
BseSI	GKGCMC	1 cut(s)	1179
BseXI	GCAGC	4 cut(s)	194, 410, 1583, 1594
BsgI	GTGCAG	3 cut(s)	180, 531, 1468
Bsh1285I	CGRYCG	1 cut(s)	853
BshFI	GGCC	5 cut(s)	121, 456, 682, 1281, 1409
BshNI	GGYRCC	1 cut(s)	303
BshTI	ACCGGT	1 cut(s)	1413
BsiEI	CGRYCG	1 cut(s)	853
BsiHKAI	GWGCWC	1 cut(s)	1604
BsiSI	CCGG	5 cut(s)	107, 1414, 1423, 1536, 1584
BslFI	GGGAC	5 cut(s)	34, 89, 119, 608, 610
BslI	CCNNNNNNNGG	4 cut(s)	322, 436, 1373, 1429
BsmAI	GTCTC	4 cut(s)	381, 466, 995, 1065
BsmBI	CGTCTC	1 cut(s)	381
BsmFI	GGGAC	5 cut(s)	34, 89, 119, 608, 610
BsmI	GAATGC	1 cut(s)	1108
BsnI	GGCC	5 cut(s)	121, 456, 682, 1281, 1409
Bso31I	GGTCTC	2 cut(s)	995, 1065
Bsp1286I	GDGCHC	2 cut(s)	1179, 1604
Bsp13I	TCCGGA	1 cut(s)	1535
Bsp143I	GATC	7 cut(s)	217, 270, 418, 528, 724, 754, 886
BspACI	CCGC	8 cut(s)	122, 156, 256, 278, 638, 894, 1515, 1587
BspANI	GGCC	5 cut(s)	121, 456, 682, 1281, 1409
BspCNI	CTCAG	4 cut(s)	547, 998, 1159, 1223
BspEI	TCCGGA	1 cut(s)	1535
BspLI	GGNNCC	3 cut(s)	305, 689, 756
BspMAI	CTGCAG	1 cut(s)	184
BspMI	ACCTGC	2 cut(s)	187, 1337
BspPI	GGATC	4 cut(s)	278, 523, 749, 762
BspQI	GCTCTTC	1 cut(s)	1560
BspT107I	GGYRCC	1 cut(s)	303
BspTNI	GGTCTC	2 cut(s)	995, 1065
BsrBI	CCGCTC	1 cut(s)	256
BsrDI	GCAATG	3 cut(s)	400, 1435, 1550
BsrFI	RCCGGY	1 cut(s)	1413
BsrI	ACTGG	5 cut(s)	53, 480, 797, 970, 1015
BssAI	RCCGGY	1 cut(s)	1413
BssECI	CCNNGG	7 cut(s)	321, 560, 659, 683, 853, 1314, 1371
BssMI	GATC	7 cut(s)	217, 270, 418, 528, 724, 754, 886
BssT1I	CCWWGG	3 cut(s)	560, 659, 1371
Bst2UI	CCWGG	3 cut(s)	230, 323, 684
Bst4CI	ACNGT	2 cut(s)	358, 924
Bst6I	CTCTTC	2 cut(s)	936, 1560
BstAPI	GCANNNNNTGC	2 cut(s)	1264, 1446
BstC8I	GCNNGC	6 cut(s)	248, 865, 1311, 1368, 1395, 1600
BstDEI	CTNAG	5 cut(s)	534, 651, 985, 1146, 1210
BstDSI	CCRYGG	1 cut(s)	1314
BstEII	GGTNACC	1 cut(s)	835
BstENI	CCTNNNNNAGG	1 cut(s)	320
BstF5I	GGATG	4 cut(s)	13, 627, 1248, 1269
BstHHI	GCGC	1 cut(s)	912
BstKTI	GATC	7 cut(s)	220, 273, 421, 531, 727, 757, 889
BstMAI	GTCTC	4 cut(s)	381, 466, 995, 1065
BstMBI	GATC	7 cut(s)	217, 270, 418, 528, 724, 754, 886
BstMCI	CGRYCG	1 cut(s)	853
BstMWI	GCNNNNNNNGC	8 cut(s)	188, 909, 1264, 1446, 1472, 1514, 1604, 1613
BstNI	CCWGG	3 cut(s)	230, 323, 684
BstNSI	RCATGY	3 cut(s)	1328, 1397, 1430
BstPI	GGTNACC	1 cut(s)	835
BstSCI	CCNGG	4 cut(s)	105, 228, 321, 682
BstSFI	CTRYAG	2 cut(s)	180, 382
BstSLI	GKGCMC	1 cut(s)	1179
BstV1I	GCAGC	4 cut(s)	194, 410, 1583, 1594
BstV2I	GAAGAC	1 cut(s)	884
BstX2I	RGATCY	2 cut(s)	528, 754
BstXI	CCANNNNNNTGG	1 cut(s)	739
BstYI	RGATCY	2 cut(s)	528, 754
BsuRI	GGCC	5 cut(s)	121, 456, 682, 1281, 1409
BtgI	CCRYGG	1 cut(s)	1314
BtsCI	GGATG	4 cut(s)	13, 627, 1248, 1269
BtsI	GCAGTG	1 cut(s)	821
BtsIMutI	CAGTG	2 cut(s)	413, 821
BveI	ACCTGC	2 cut(s)	187, 1337
Cac8I	GCNNGC	6 cut(s)	248, 865, 1311, 1368, 1395, 1600
CfoI	GCGC	1 cut(s)	912
Cfr10I	RCCGGY	1 cut(s)	1413
Cfr13I	GGNCC	2 cut(s)	226, 236
Csp6I	GTAC	3 cut(s)	304, 313, 1090
CspAI	ACCGGT	1 cut(s)	1413
CviQI	GTAC	3 cut(s)	304, 313, 1090
DdeI	CTNAG	5 cut(s)	534, 651, 985, 1146, 1210
DpnI	GATC	7 cut(s)	219, 272, 420, 530, 726, 756, 888
DpnII	GATC	7 cut(s)	217, 270, 418, 528, 724, 754, 886
EaeI	YGGCCR	2 cut(s)	1279, 1407
Eam1104I	CTCTTC	2 cut(s)	936, 1560
EarI	CTCTTC	2 cut(s)	936, 1560
EciI	GGCGGA	3 cut(s)	293, 883, 1602
Eco130I	CCWWGG	3 cut(s)	560, 659, 1371
Eco31I	GGTCTC	2 cut(s)	995, 1065
Eco47I	GGWCC	2 cut(s)	226, 236
Eco57I	CTGAAG	1 cut(s)	389
Eco91I	GGTNACC	1 cut(s)	835
EcoNI	CCTNNNNNAGG	1 cut(s)	320
EcoO109I	RGGNCCY	2 cut(s)	226, 236
EcoO65I	GGTNACC	1 cut(s)	835
EcoRII	CCWGG	3 cut(s)	228, 321, 682
EcoT14I	CCWWGG	3 cut(s)	560, 659, 1371
EcoT22I	ATGCAT	1 cut(s)	1395
ErhI	CCWWGG	3 cut(s)	560, 659, 1371
Esp3I	CGTCTC	1 cut(s)	381
FaqI	GGGAC	5 cut(s)	34, 89, 119, 608, 610
FbaI	TGATCA	2 cut(s)	724, 886
FblI	GTMKAC	1 cut(s)	1003
Fnu4HI	GCNGC	5 cut(s)	122, 183, 424, 1572, 1608
FokI	GGATG	3 cut(s)	634, 1255, 1276
Fsp4HI	GCNGC	5 cut(s)	122, 183, 424, 1572, 1608
FspBI	CTAG	3 cut(s)	101, 197, 561
GlaI	GCGC	1 cut(s)	911
GluI	GCNGC	5 cut(s)	122, 183, 424, 1572, 1608
GsuI	CTGGAG	2 cut(s)	814, 883
HaeIII	GGCC	5 cut(s)	121, 456, 682, 1281, 1409
HapII	CCGG	5 cut(s)	107, 1414, 1423, 1536, 1584
HhaI	GCGC	1 cut(s)	912
Hin6I	GCGC	1 cut(s)	910
HinP1I	GCGC	1 cut(s)	910
HincII	GTYRAC	1 cut(s)	955
HindII	GTYRAC	1 cut(s)	955
HindIII	AAGCTT	2 cut(s)	1464, 1473
HinfI	GANTC	3 cut(s)	596, 655, 1134
HpaII	CCGG	5 cut(s)	107, 1414, 1423, 1536, 1584
HphI	GGTGA	3 cut(s)	310, 601, 829
Hpy166II	GTNNAC	2 cut(s)	955, 1004
Hpy188I	TCNGA	5 cut(s)	354, 451, 1101, 1149, 1213
Hpy188III	TCNNGA	4 cut(s)	332, 526, 944, 1536
Hpy8I	GTNNAC	2 cut(s)	955, 1004
HpyAV	CCTTC	4 cut(s)	446, 500, 1533, 1543
HpyCH4III	ACNGT	2 cut(s)	358, 924
HpyCH4IV	ACGT	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	8 cut(s)	188, 909, 1264, 1446, 1472, 1514, 1604, 1613
HpyF3I	CTNAG	5 cut(s)	534, 651, 985, 1146, 1210
HpySE526I	ACGT	1 cut(s)	132
HspAI	GCGC	1 cut(s)	910
Kpn2I	TCCGGA	1 cut(s)	1535
KpnI	GGTACC	1 cut(s)	307
Ksp22I	TGATCA	2 cut(s)	724, 886
Kzo9I	GATC	7 cut(s)	217, 270, 418, 528, 724, 754, 886
LguI	GCTCTTC	1 cut(s)	1560
LmnI	GCTCC	5 cut(s)	74, 196, 1333, 1402, 1586
Lsp1109I	GCAGC	4 cut(s)	194, 410, 1583, 1594
LweI	GCATC	5 cut(s)	328, 538, 802, 1254, 1367
MaeI	CTAG	3 cut(s)	101, 197, 561
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	3 cut(s)	55, 410, 835
MalI	GATC	7 cut(s)	219, 272, 420, 530, 726, 756, 888
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	7 cut(s)	217, 270, 418, 528, 724, 754, 886
MboII	GAAGA	8 cut(s)	212, 227, 347, 821, 889, 923, 1134, 1547
MflI	RGATCY	2 cut(s)	528, 754
MhlI	GDGCHC	2 cut(s)	1179, 1604
MlsI	TGGCCA	2 cut(s)	1281, 1409
MluNI	TGGCCA	2 cut(s)	1281, 1409
MlyI	GAGTC	1 cut(s)	590
Mox20I	TGGCCA	2 cut(s)	1281, 1409
Mph1103I	ATGCAT	1 cut(s)	1395
MroI	TCCGGA	1 cut(s)	1535
MscI	TGGCCA	2 cut(s)	1281, 1409
MseI	TTAA	1 cut(s)	1197
MslI	CAYNNNNRTG	1 cut(s)	1101
Msp20I	TGGCCA	2 cut(s)	1281, 1409
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	5 cut(s)	107, 1414, 1423, 1536, 1584
MspR9I	CCNGG	4 cut(s)	107, 230, 323, 684
Mva1269I	GAATGC	1 cut(s)	1108
MvaI	CCWGG	3 cut(s)	230, 323, 684
MwoI	GCNNNNNNNGC	8 cut(s)	188, 909, 1264, 1446, 1472, 1514, 1604, 1613
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	7 cut(s)	217, 270, 418, 528, 724, 754, 886
NlaIV	GGNNCC	3 cut(s)	305, 689, 756
NmeAIII	GCCGAG	1 cut(s)	1583
NmuCI	GTSAC	1 cut(s)	835
NsiI	ATGCAT	1 cut(s)	1395
NspI	RCATGY	3 cut(s)	1328, 1397, 1430
PaeI	GCATGC	1 cut(s)	1397
PaqCI	CACCTGC	1 cut(s)	1337
PciSI	GCTCTTC	1 cut(s)	1560
PcsI	WCGNNNNNNNCGW	1 cut(s)	850
PctI	GAATGC	1 cut(s)	1108
PfeI	GAWTC	2 cut(s)	655, 1134
PflMI	CCANNNNNTGG	1 cut(s)	436
PinAI	ACCGGT	1 cut(s)	1413
PkrI	GCNGC	5 cut(s)	123, 184, 425, 1573, 1609
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
PpuMI	RGGWCCY	2 cut(s)	226, 236
Psp5II	RGGWCCY	2 cut(s)	226, 236
Psp6I	CCWGG	3 cut(s)	228, 321, 682
PspEI	GGTNACC	1 cut(s)	835
PspGI	CCWGG	3 cut(s)	228, 321, 682
PspN4I	GGNNCC	3 cut(s)	305, 689, 756
PspPI	GGNCC	2 cut(s)	226, 236
PspPPI	RGGWCCY	2 cut(s)	226, 236
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	2 cut(s)	528, 754
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	3 cut(s)	305, 314, 1091
RsaNI	GTAC	3 cut(s)	304, 313, 1090
RseI	CAYNNNNRTG	1 cut(s)	1101
SapI	GCTCTTC	1 cut(s)	1560
SaqAI	TTAA	1 cut(s)	1197
SatI	GCNGC	5 cut(s)	122, 183, 424, 1572, 1608
Sau3AI	GATC	7 cut(s)	217, 270, 418, 528, 724, 754, 886
Sau96I	GGNCC	2 cut(s)	226, 236
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	4 cut(s)	107, 230, 323, 684
SduI	GDGCHC	2 cut(s)	1179, 1604
SfaNI	GCATC	5 cut(s)	328, 538, 802, 1254, 1367
SfcI	CTRYAG	2 cut(s)	180, 382
SinI	GGWCC	2 cut(s)	226, 236
SmiMI	CAYNNNNRTG	1 cut(s)	1101
SpeI	ACTAGT	1 cut(s)	100
SphI	GCATGC	1 cut(s)	1397
SsiI	CCGC	8 cut(s)	122, 156, 256, 278, 638, 894, 1515, 1587
SspMI	CTAG	3 cut(s)	101, 197, 561
StyD4I	CCNGG	4 cut(s)	105, 228, 321, 682
StyI	CCWWGG	3 cut(s)	560, 659, 1371
TaaI	ACNGT	2 cut(s)	358, 924
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	3 cut(s)	363, 943, 1320
TaqII	GACCGA	1 cut(s)	867
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	2 cut(s)	655, 1134
Tru1I	TTAA	1 cut(s)	1197
Tru9I	TTAA	1 cut(s)	1197
TscAI	CASTG	2 cut(s)	413, 828
TseFI	GTSAC	1 cut(s)	835
TseI	GCWGC	4 cut(s)	182, 423, 1571, 1607
Tsp45I	GTSAC	1 cut(s)	835
TspDTI	ATGAA	3 cut(s)	228, 1424, 1624
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	2 cut(s)	413, 828
Van91I	CCANNNNNTGG	1 cut(s)	436
VpaK11BI	GGWCC	2 cut(s)	226, 236
XagI	CCTNNNNNAGG	1 cut(s)	320
XapI	RAATTY	3 cut(s)	555, 1402, 1630
XceI	RCATGY	3 cut(s)	1328, 1397, 1430
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XmaJI	CCTAGG	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	1003
XspI	CTAG	3 cut(s)	101, 197, 561
Zsp2I	ATGCAT	1 cut(s)	1395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.