Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011502

Physical Location & Seq

Genomic Coordinates Forward (+)

59709545 .. 59711425

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG411200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1668 bp

ATGGCTTTGTTTCATCCATTTCTTTCACACTATTCCACCTCTCTGCTGTCCCCAGTAACCCACAAACAATTAGGAGCTACACAACCACAGCCACAGCCACAGCCACTCAAACTAGTCCCGGTTGCACACAGACCGCCGTTCAACGTCCCAACACGAAAGACCAAGTGCGGTGCAGTCGCAGACATCAAACCTGCAGCACCAGCTCCACTAGAAGATGATGATGAAGATCACAAGGTCCTGGTAGGTCCTACCAGCGAGCAAGAGCGGAGAGGAGATAGGATCGTGGCGGACTATGATTGGACGGAGGAATGGTACCCTCTGTACCTCACCCAGGACATTCCAGAGGATGCACCTTTGGGTCTAACTGTGTTCGATAAGCAACTAGTTCTCTACAGAGACGGCAATGGTGTGCTTCAGTGTTACCAAGATCGCTGCCCCCACAGGTTGGCGAAATTATCAGAAGGCCAACTGATTGATGGGAGACTGGAATGTTTATATCATGGTTGGCAATTTGAAGGTGCAGGAAAATGTGTCAAGATCCCTCAGCTTCCAGCTGATGCCAAAATTCCTAGGTCCGCTTGTGTGAAAACATATGAGGTGAGGGACTCGCAAGGTGTTGTGTGGGTTTGGATGTCCCATAAGACACCACCAAACCCTGCTAAGGTTCCTTGGTTTGAGAACTTTGACAGGCCAGGGTTCCAAGATACTTCAACAACCCATGAGCTTCCTTATGATCACTCCATACTTTTGGAGAACCTCATGGATCCAGCCCATGTTCCAATCTCACATGACAGGACAGACTGGAGTGCTAAAAGGGAAGATGCTCAACCGCTGCGTTTTGAGGTCACTGAACGCACCGACCGAGGATTTGCAGGCTGGTGGGGGAAGACAACTGATCAGTCCGCCTCCAGCTTCTTGCGCTTTGAAGCACCGTGTTCTCTTCAAAACAATCGAGAAATTGTTGACGACAAGACTGGGGAAACACACTACTTCTCAGGTCTCTTTCTTTGTAGACCAACTGGACAAGGGAAGTCCATGCTCATTGTGAGGTTTGGAGGAACAAAAAGGTCTCCTCTGGCAAAATTGTTTCCCAAATGGTACTTCCATCAGAATGCAGGAAAGGTGTTTGAGCAAGACATGGGATTCCTTTCTTCTCAGAATGAGATACTTATCAAAGAAAAAGTGCCCACCAAGAACCTCTACCTTAACTTGAAATCCTCAGATACATGGGTAGCTGAATACAGAAAATGGATGGACAAAGTTGGGCATGGGATGCCTTACCACTTTGGCCACAGCACAATATCGTTGCCCAAAGAGCCTGCCGTGGTCGAACATGCTCCTGCTGGACTTGTTGCAGGTGTATCGGCATCTTTGCCTGCCAAGGGAGGCATTGGAACCATGCATGCTCCAAATTTGGCCAACCGGTATTTCCGGCATGTGGTTCATTGCAAAGAGTGCAGAAATGTTGTCAAAGCTTTCCAAGCTTGGAAAAATTACCTTTCTGCTATTGCTGTTGCATTGACCGCTTTGGCAATTCTAATCTCCGGAAGGCAATGGAAGGCTCTTCTGTTAGTATCAGCAGCCGTATGCTCCGGCGGAGTTTATGCATGCTCGGCTGCTGTTGCATTGAACACAACAAATTTCATTAGGACACATAGGAGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015031 GO:0015833 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PaO Rieske

Protein Analysis

555

Amino Acids

62.26

Weight (kDa)

8.67

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rieske	PF00355	103 - 189	2.3e-24	Rieske [2Fe-2S] domain
PaO	PF08417	308 - 394	1.3e-22	Pheophorbide a oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24820
fragaria_vesca	FvH4_2g41330
malus_domestica	MD08G1051400.v1.1
prunus_persica	Prupe.1G397100_v2.0.a1 Prupe.1G397200_v2.0.a1 Prupe.1G397200_v2.0.a1 Prupe.1G397200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0299151
rosa_laevigata	RLG00000011459 RLG00000028023
rosa_multiflora	Rmu_sc0001434.1_g000017
rosa_roxburghii	Rroxscaffold_4G00298790 Rroxscaffold_7G00168970
rosa_rugosa	Rorug06G0285700 Rorug06G0285800
rosa_samantha	Rh6AG396700 Rh6BG405200 Rh6CG411200 Rh6DG397900
rosa_wichuraiana	Rw6G034730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1346
Acc36I	ACCTGC	2 cut(s)	199, 1346
Acc65I	GGTACC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	312
AccB7I	CCANNNNNTGG	1 cut(s)	445
AccBSI	CCGCTC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	1012
AccIII	TCCGGA	1 cut(s)	1544
AciI	CCGC	9 cut(s)	134, 168, 265, 287, 576, 830, 903, 1524, 1596
AclWI	GGATC	4 cut(s)	287, 532, 758, 771
AcoI	YGGCCR	2 cut(s)	1288, 1416
AcsI	RAATTY	3 cut(s)	564, 1411, 1639
AcuI	CTGAAG	1 cut(s)	398
AfaI	GTAC	3 cut(s)	314, 323, 1100
AfiI	CCNNNNNNNGG	5 cut(s)	331, 445, 661, 1382, 1438
AgeI	ACCGGT	1 cut(s)	1422
AgsI	TTSAA	7 cut(s)	142, 515, 711, 926, 944, 1213, 1630
AhlI	ACTAGT	2 cut(s)	112, 382
AjnI	CCWGG	3 cut(s)	237, 330, 691
AjuI	GAANNNNNNNTTGG	4 cut(s)	1085, 1117, 1412, 1444
AluBI	AGCT	9 cut(s)	77, 203, 547, 554, 724, 912, 1235, 1475, 1484
AluI	AGCT	9 cut(s)	77, 203, 547, 554, 724, 912, 1235, 1475, 1484
Alw26I	GTCTC	4 cut(s)	390, 475, 1004, 1074
AlwI	GGATC	4 cut(s)	287, 532, 758, 771
Aor13HI	TCCGGA	1 cut(s)	1544
AoxI	GGCC	4 cut(s)	463, 689, 1288, 1416
ApeKI	GCWGC	5 cut(s)	194, 432, 832, 1580, 1616
ApoI	RAATTY	3 cut(s)	564, 1411, 1639
ArsI	GACNNNNNNTTYG	2 cut(s)	851, 883
AsiGI	ACCGGT	1 cut(s)	1422
Asp718I	GGTACC	1 cut(s)	312
AspA2I	CCTAGG	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	921
AspS9I	GGNCC	3 cut(s)	235, 245, 573
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	319, 610
AvaII	GGWCC	3 cut(s)	235, 245, 573
AvrII	CCTAGG	1 cut(s)	569
BaeGI	GKGCMC	1 cut(s)	1188
BaeI	ACNNNNGTAYC	2 cut(s)	1215, 1248
BalI	TGGCCA	2 cut(s)	1290, 1418
BamHI	GGATCC	1 cut(s)	763
BanI	GGYRCC	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	893
BbvCI	CCTCAGC	1 cut(s)	543
BbvI	GCAGC	5 cut(s)	206, 419, 819, 1592, 1603
BccI	CCATC	3 cut(s)	470, 1113, 1246
BceAI	ACGGC	4 cut(s)	121, 415, 1307, 1568
BcgI	CGANNNNNNTGC	2 cut(s)	1344, 1378
BciT130I	CCWGG	3 cut(s)	239, 332, 693
BclI	TGATCA	2 cut(s)	733, 895
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	4 cut(s)	390, 475, 1004, 1074
BcuI	ACTAGT	2 cut(s)	112, 382
BfaI	CTAG	4 cut(s)	113, 209, 383, 570
BfmI	CTRYAG	2 cut(s)	192, 391
BfuAI	ACCTGC	2 cut(s)	199, 1346
BisI	GCNGC	5 cut(s)	195, 433, 833, 1581, 1617
BlnI	CCTAGG	1 cut(s)	569
BlsI	GCNGC	5 cut(s)	196, 434, 834, 1582, 1618
Bme1390I	CCNGG	4 cut(s)	119, 239, 332, 693
Bme18I	GGWCC	3 cut(s)	235, 245, 573
BmgT120I	GGNCC	3 cut(s)	235, 245, 573
BmiI	GGNNCC	5 cut(s)	314, 666, 698, 765, 1396
BmrFI	CCNGG	4 cut(s)	119, 239, 332, 693
BmrI	ACTGGG	2 cut(s)	47, 984
BmsI	GCATC	5 cut(s)	337, 547, 811, 1263, 1376
BmuI	ACTGGG	2 cut(s)	47, 984
BpiI	GAAGAC	1 cut(s)	893
BpmI	CTGGAG	2 cut(s)	823, 892
Bpu10I	CCTNAGC	2 cut(s)	543, 660
BpuMI	CCSGG	1 cut(s)	119
BsaBI	GATNNNNATC	2 cut(s)	225, 1169
BsaI	GGTCTC	2 cut(s)	1004, 1074
BsaJI	CCNNGG	7 cut(s)	330, 569, 668, 692, 862, 1323, 1380
BsaWI	WCCGGW	2 cut(s)	1422, 1544
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	5 cut(s)	331, 445, 661, 1382, 1438
Bse118I	RCCGGY	1 cut(s)	1422
Bse1I	ACTGG	5 cut(s)	53, 489, 806, 979, 1024
Bse3DI	GCAATG	3 cut(s)	409, 1444, 1559
Bse8I	GATNNNNATC	2 cut(s)	225, 1169
BseAI	TCCGGA	1 cut(s)	1544
BseBI	CCWGG	3 cut(s)	239, 332, 693
BseDI	CCNNGG	7 cut(s)	330, 569, 668, 692, 862, 1323, 1380
BseGI	GGATG	5 cut(s)	13, 352, 636, 1257, 1278
BseJI	GATNNNNATC	2 cut(s)	225, 1169
BseLI	CCNNNNNNNGG	5 cut(s)	331, 445, 661, 1382, 1438
BseMI	GCAATG	3 cut(s)	409, 1444, 1559
BseMII	CTCAG	4 cut(s)	557, 1008, 1169, 1233
BseNI	ACTGG	5 cut(s)	53, 489, 806, 979, 1024
BseRI	GAGGAG	2 cut(s)	285, 1062
BseSI	GKGCMC	1 cut(s)	1188
BseXI	GCAGC	5 cut(s)	206, 419, 819, 1592, 1603
BsgI	GTGCAG	3 cut(s)	192, 540, 1477
Bsh1285I	CGRYCG	1 cut(s)	862
BshFI	GGCC	4 cut(s)	465, 691, 1290, 1418
BshNI	GGYRCC	1 cut(s)	312
BshTI	ACCGGT	1 cut(s)	1422
BsiEI	CGRYCG	1 cut(s)	862
BsiSI	CCGG	5 cut(s)	119, 1423, 1432, 1545, 1593
BslFI	GGGAC	5 cut(s)	34, 101, 131, 617, 619
BslI	CCNNNNNNNGG	5 cut(s)	331, 445, 661, 1382, 1438
BsmAI	GTCTC	4 cut(s)	390, 475, 1004, 1074
BsmBI	CGTCTC	1 cut(s)	390
BsmFI	GGGAC	5 cut(s)	34, 101, 131, 617, 619
BsmI	GAATGC	1 cut(s)	1117
BsnI	GGCC	4 cut(s)	465, 691, 1290, 1418
Bso31I	GGTCTC	2 cut(s)	1004, 1074
Bsp1286I	GDGCHC	1 cut(s)	1188
Bsp13I	TCCGGA	1 cut(s)	1544
Bsp143I	GATC	7 cut(s)	226, 279, 427, 537, 733, 763, 895
BspACI	CCGC	9 cut(s)	134, 168, 265, 287, 576, 830, 903, 1524, 1596
BspANI	GGCC	4 cut(s)	465, 691, 1290, 1418
BspCNI	CTCAG	4 cut(s)	556, 1007, 1168, 1232
BspEI	TCCGGA	1 cut(s)	1544
BspLI	GGNNCC	5 cut(s)	314, 666, 698, 765, 1396
BspMAI	CTGCAG	1 cut(s)	196
BspMI	ACCTGC	2 cut(s)	199, 1346
BspPI	GGATC	4 cut(s)	287, 532, 758, 771
BspQI	GCTCTTC	1 cut(s)	1569
BspT107I	GGYRCC	1 cut(s)	312
BspTNI	GGTCTC	2 cut(s)	1004, 1074
BsrBI	CCGCTC	1 cut(s)	265
BsrDI	GCAATG	3 cut(s)	409, 1444, 1559
BsrFI	RCCGGY	1 cut(s)	1422
BsrI	ACTGG	5 cut(s)	53, 489, 806, 979, 1024
BssAI	RCCGGY	1 cut(s)	1422
BssECI	CCNNGG	7 cut(s)	330, 569, 668, 692, 862, 1323, 1380
BssMI	GATC	7 cut(s)	226, 279, 427, 537, 733, 763, 895
BssT1I	CCWWGG	3 cut(s)	569, 668, 1380
Bst2UI	CCWGG	3 cut(s)	239, 332, 693
Bst4CI	ACNGT	2 cut(s)	367, 933
Bst6I	CTCTTC	2 cut(s)	945, 1569
BstAPI	GCANNNNNTGC	2 cut(s)	1273, 1455
BstC8I	GCNNGC	6 cut(s)	257, 874, 1320, 1377, 1404, 1609
BstDEI	CTNAG	5 cut(s)	543, 660, 994, 1155, 1219
BstDSI	CCRYGG	1 cut(s)	1323
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	5 cut(s)	13, 352, 636, 1257, 1278
BstHHI	GCGC	1 cut(s)	921
BstKTI	GATC	7 cut(s)	229, 282, 430, 540, 736, 766, 898
BstMAI	GTCTC	4 cut(s)	390, 475, 1004, 1074
BstMBI	GATC	7 cut(s)	226, 279, 427, 537, 733, 763, 895
BstMCI	CGRYCG	1 cut(s)	862
BstMWI	GCNNNNNNNGC	9 cut(s)	200, 918, 1273, 1315, 1455, 1481, 1523, 1613, 1622
BstNI	CCWGG	3 cut(s)	239, 332, 693
BstNSI	RCATGY	4 cut(s)	1337, 1406, 1439, 1611
BstSCI	CCNGG	4 cut(s)	117, 237, 330, 691
BstSFI	CTRYAG	2 cut(s)	192, 391
BstSLI	GKGCMC	1 cut(s)	1188
BstV1I	GCAGC	5 cut(s)	206, 419, 819, 1592, 1603
BstV2I	GAAGAC	1 cut(s)	893
BstX2I	RGATCY	2 cut(s)	537, 763
BstXI	CCANNNNNNTGG	1 cut(s)	748
BstYI	RGATCY	2 cut(s)	537, 763
BsuRI	GGCC	4 cut(s)	465, 691, 1290, 1418
BtgI	CCRYGG	1 cut(s)	1323
BtsCI	GGATG	5 cut(s)	13, 352, 636, 1257, 1278
BtsIMutI	CAGTG	2 cut(s)	422, 846
BveI	ACCTGC	2 cut(s)	199, 1346
Cac8I	GCNNGC	6 cut(s)	257, 874, 1320, 1377, 1404, 1609
CfoI	GCGC	1 cut(s)	921
Cfr10I	RCCGGY	1 cut(s)	1422
Cfr13I	GGNCC	3 cut(s)	235, 245, 573
Csp6I	GTAC	3 cut(s)	313, 322, 1099
CspAI	ACCGGT	1 cut(s)	1422
CviQI	GTAC	3 cut(s)	313, 322, 1099
DdeI	CTNAG	5 cut(s)	543, 660, 994, 1155, 1219
DpnI	GATC	7 cut(s)	228, 281, 429, 539, 735, 765, 897
DpnII	GATC	7 cut(s)	226, 279, 427, 537, 733, 763, 895
EaeI	YGGCCR	2 cut(s)	1288, 1416
Eam1104I	CTCTTC	2 cut(s)	945, 1569
EarI	CTCTTC	2 cut(s)	945, 1569
EciI	GGCGGA	3 cut(s)	302, 892, 1611
Eco130I	CCWWGG	3 cut(s)	569, 668, 1380
Eco31I	GGTCTC	2 cut(s)	1004, 1074
Eco47I	GGWCC	3 cut(s)	235, 245, 573
Eco57I	CTGAAG	1 cut(s)	398
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	2 cut(s)	235, 245
EcoRII	CCWGG	3 cut(s)	237, 330, 691
EcoT14I	CCWWGG	3 cut(s)	569, 668, 1380
EcoT22I	ATGCAT	2 cut(s)	1404, 1609
ErhI	CCWWGG	3 cut(s)	569, 668, 1380
Esp3I	CGTCTC	1 cut(s)	390
FaqI	GGGAC	5 cut(s)	34, 101, 131, 617, 619
FauNDI	CATATG	1 cut(s)	592
FbaI	TGATCA	2 cut(s)	733, 895
FblI	GTMKAC	1 cut(s)	1012
Fnu4HI	GCNGC	5 cut(s)	195, 433, 833, 1581, 1617
FokI	GGATG	4 cut(s)	359, 643, 1264, 1285
Fsp4HI	GCNGC	5 cut(s)	195, 433, 833, 1581, 1617
FspBI	CTAG	4 cut(s)	113, 209, 383, 570
GlaI	GCGC	1 cut(s)	920
GluI	GCNGC	5 cut(s)	195, 433, 833, 1581, 1617
GsuI	CTGGAG	2 cut(s)	823, 892
HaeIII	GGCC	4 cut(s)	465, 691, 1290, 1418
HapII	CCGG	5 cut(s)	119, 1423, 1432, 1545, 1593
HhaI	GCGC	1 cut(s)	921
Hin6I	GCGC	1 cut(s)	919
HinP1I	GCGC	1 cut(s)	919
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HindIII	AAGCTT	2 cut(s)	1473, 1482
HinfI	GANTC	2 cut(s)	605, 1143
HpaII	CCGG	5 cut(s)	119, 1423, 1432, 1545, 1593
HphI	GGTGA	2 cut(s)	319, 610
Hpy166II	GTNNAC	2 cut(s)	964, 1013
Hpy188I	TCNGA	4 cut(s)	460, 1110, 1158, 1222
Hpy188III	TCNNGA	4 cut(s)	341, 535, 953, 1545
Hpy8I	GTNNAC	2 cut(s)	964, 1013
HpyAV	CCTTC	4 cut(s)	455, 509, 1542, 1552
HpyCH4III	ACNGT	2 cut(s)	367, 933
HpyCH4IV	ACGT	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	9 cut(s)	200, 918, 1273, 1315, 1455, 1481, 1523, 1613, 1622
HpyF3I	CTNAG	5 cut(s)	543, 660, 994, 1155, 1219
HpySE526I	ACGT	1 cut(s)	144
HspAI	GCGC	1 cut(s)	919
Kpn2I	TCCGGA	1 cut(s)	1544
KpnI	GGTACC	1 cut(s)	316
Ksp22I	TGATCA	2 cut(s)	733, 895
Kzo9I	GATC	7 cut(s)	226, 279, 427, 537, 733, 763, 895
LguI	GCTCTTC	1 cut(s)	1569
LmnI	GCTCC	5 cut(s)	74, 208, 1342, 1411, 1595
Lsp1109I	GCAGC	5 cut(s)	206, 419, 819, 1592, 1603
LweI	GCATC	5 cut(s)	337, 547, 811, 1263, 1376
MaeI	CTAG	4 cut(s)	113, 209, 383, 570
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	3 cut(s)	55, 419, 844
MalI	GATC	7 cut(s)	228, 281, 429, 539, 735, 765, 897
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	7 cut(s)	226, 279, 427, 537, 733, 763, 895
MboII	GAAGA	7 cut(s)	224, 236, 830, 898, 932, 1143, 1556
MflI	RGATCY	2 cut(s)	537, 763
MhlI	GDGCHC	1 cut(s)	1188
MlsI	TGGCCA	2 cut(s)	1290, 1418
MluNI	TGGCCA	2 cut(s)	1290, 1418
MlyI	GAGTC	1 cut(s)	599
Mox20I	TGGCCA	2 cut(s)	1290, 1418
Mph1103I	ATGCAT	2 cut(s)	1404, 1609
MroI	TCCGGA	1 cut(s)	1544
MscI	TGGCCA	2 cut(s)	1290, 1418
MseI	TTAA	1 cut(s)	1206
MslI	CAYNNNNRTG	1 cut(s)	1110
Msp20I	TGGCCA	2 cut(s)	1290, 1418
MspA1I	CMGCKG	2 cut(s)	554, 832
MspI	CCGG	5 cut(s)	119, 1423, 1432, 1545, 1593
MspR9I	CCNGG	4 cut(s)	119, 239, 332, 693
Mva1269I	GAATGC	1 cut(s)	1117
MvaI	CCWGG	3 cut(s)	239, 332, 693
MwoI	GCNNNNNNNGC	9 cut(s)	200, 918, 1273, 1315, 1455, 1481, 1523, 1613, 1622
NciI	CCSGG	1 cut(s)	119
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	7 cut(s)	226, 279, 427, 537, 733, 763, 895
NlaIV	GGNNCC	5 cut(s)	314, 666, 698, 765, 1396
NmeAIII	GCCGAG	1 cut(s)	1592
NmuCI	GTSAC	1 cut(s)	844
NsiI	ATGCAT	2 cut(s)	1404, 1609
NspI	RCATGY	4 cut(s)	1337, 1406, 1439, 1611
PaeI	GCATGC	2 cut(s)	1406, 1611
PaqCI	CACCTGC	1 cut(s)	1346
PciSI	GCTCTTC	1 cut(s)	1569
PcsI	WCGNNNNNNNCGW	1 cut(s)	859
PctI	GAATGC	1 cut(s)	1117
PfeI	GAWTC	1 cut(s)	1143
PflMI	CCANNNNNTGG	1 cut(s)	445
PinAI	ACCGGT	1 cut(s)	1422
PkrI	GCNGC	5 cut(s)	196, 434, 834, 1582, 1618
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
PpuMI	RGGWCCY	2 cut(s)	235, 245
Psp5II	RGGWCCY	2 cut(s)	235, 245
Psp6I	CCWGG	3 cut(s)	237, 330, 691
PspGI	CCWGG	3 cut(s)	237, 330, 691
PspN4I	GGNNCC	5 cut(s)	314, 666, 698, 765, 1396
PspPI	GGNCC	3 cut(s)	235, 245, 573
PspPPI	RGGWCCY	2 cut(s)	235, 245
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	2 cut(s)	537, 763
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	3 cut(s)	314, 323, 1100
RsaNI	GTAC	3 cut(s)	313, 322, 1099
RseI	CAYNNNNRTG	1 cut(s)	1110
SapI	GCTCTTC	1 cut(s)	1569
SaqAI	TTAA	1 cut(s)	1206
SatI	GCNGC	5 cut(s)	195, 433, 833, 1581, 1617
Sau3AI	GATC	7 cut(s)	226, 279, 427, 537, 733, 763, 895
Sau96I	GGNCC	3 cut(s)	235, 245, 573
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	4 cut(s)	119, 239, 332, 693
SduI	GDGCHC	1 cut(s)	1188
SfaNI	GCATC	5 cut(s)	337, 547, 811, 1263, 1376
SfcI	CTRYAG	2 cut(s)	192, 391
SinI	GGWCC	3 cut(s)	235, 245, 573
SmiMI	CAYNNNNRTG	1 cut(s)	1110
SpeI	ACTAGT	2 cut(s)	112, 382
SphI	GCATGC	2 cut(s)	1406, 1611
SsiI	CCGC	9 cut(s)	134, 168, 265, 287, 576, 830, 903, 1524, 1596
SspMI	CTAG	4 cut(s)	113, 209, 383, 570
StyD4I	CCNGG	4 cut(s)	117, 237, 330, 691
StyI	CCWWGG	3 cut(s)	569, 668, 1380
TaaI	ACNGT	2 cut(s)	367, 933
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	3 cut(s)	372, 952, 1329
TaqII	GACCGA	1 cut(s)	876
TfiI	GAWTC	1 cut(s)	1143
Tru1I	TTAA	1 cut(s)	1206
Tru9I	TTAA	1 cut(s)	1206
TscAI	CASTG	2 cut(s)	422, 853
TseFI	GTSAC	1 cut(s)	844
TseI	GCWGC	5 cut(s)	194, 432, 832, 1580, 1616
Tsp45I	GTSAC	1 cut(s)	844
TspDTI	ATGAA	3 cut(s)	237, 1433, 1633
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	2 cut(s)	422, 853
Van91I	CCANNNNNTGG	1 cut(s)	445
VpaK11BI	GGWCC	3 cut(s)	235, 245, 573
XagI	CCTNNNNNAGG	1 cut(s)	329
XapI	RAATTY	3 cut(s)	564, 1411, 1639
XceI	RCATGY	4 cut(s)	1337, 1406, 1439, 1611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
XmaJI	CCTAGG	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	1012
XspI	CTAG	4 cut(s)	113, 209, 383, 570
Zsp2I	ATGCAT	2 cut(s)	1404, 1609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.