component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G25754 AT5G25757 |
| fragaria_vesca | FvH4_2g36000 FvH4_2g36000 FvH4_2g36000 FvH4_2g36000 |
| malus_domestica | MD08G1117100.v1.1 MD15G1096700.v1.1 |
| prunus_persica | Prupe.1G451600_v2.0.a1 |
| pyrus_communis | pycom08g09770 pycom15g08880 |
| rosa_chinensis | RchiOBHm_Chr6g0305871 |
| rosa_laevigata | RLG00000010851 |
| rosa_multiflora | Rmu_sc0001809.1_g000044 Rmu_sc0032608.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00162260 |
| rosa_rugosa | Rorug06G0344500 |
| rosa_samantha | Rh6AG456300 Rh6BG444900 Rh6CG470300 Rh6DG457000 |
| rosa_wichuraiana | Rw6G039810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 690 |
| AatII | GACGTC | 1 cut(s) | 209 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 447 |
| AccI | GTMKAC | 3 cut(s) | 261, 282, 465 |
| AccII | CGCG | 3 cut(s) | 8, 168, 315 |
| AccIII | TCCGGA | 1 cut(s) | 74 |
| AciI | CCGC | 6 cut(s) | 6, 157, 166, 313, 328, 1537 |
| AclWI | GGATC | 1 cut(s) | 181 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 917 |
| AcuI | CTGAAG | 1 cut(s) | 380 |
| AcyI | GRCGYC | 3 cut(s) | 68, 206, 420 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 447, 1383 |
| AgsI | TTSAA | 6 cut(s) | 215, 238, 712, 1253, 1258, 1556 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 46 |
| AjiI | CACGTC | 1 cut(s) | 295 |
| AjnI | CCWGG | 6 cut(s) | 28, 63, 341, 402, 566, 1233 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 361, 393 |
| Alw21I | GWGCWC | 1 cut(s) | 642 |
| Alw26I | GTCTC | 4 cut(s) | 197, 401, 764, 975 |
| AlwI | GGATC | 1 cut(s) | 181 |
| Ama87I | CYCGRG | 1 cut(s) | 635 |
| Aor13HI | TCCGGA | 1 cut(s) | 74 |
| AoxI | GGCC | 3 cut(s) | 3, 251, 781 |
| ApeKI | GCWGC | 4 cut(s) | 433, 436, 796, 1282 |
| ApoI | RAATTY | 1 cut(s) | 917 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 98, 126, 130, 158 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1262 |
| AspA2I | CCTAGG | 1 cut(s) | 97 |
| AspLEI | GCGC | 1 cut(s) | 63 |
| AspS9I | GGNCC | 3 cut(s) | 33, 252, 1308 |
| AsuC2I | CCSGG | 1 cut(s) | 122 |
| AsuHPI | GGTGA | 3 cut(s) | 779, 1063, 1112 |
| AsuNHI | GCTAGC | 1 cut(s) | 1348 |
| AvaI | CYCGRG | 1 cut(s) | 635 |
| AvaII | GGWCC | 2 cut(s) | 33, 1308 |
| AvrII | CCTAGG | 1 cut(s) | 97 |
| BanII | GRGCYC | 1 cut(s) | 82 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 164, 196, 835, 867 |
| BauI | CACGAG | 1 cut(s) | 641 |
| BbsI | GAAGAC | 1 cut(s) | 289 |
| Bbv12I | GWGCWC | 1 cut(s) | 642 |
| BbvI | GCAGC | 4 cut(s) | 423, 445, 808, 1294 |
| BccI | CCATC | 4 cut(s) | 94, 671, 969, 1201 |
| BceAI | ACGGC | 1 cut(s) | 433 |
| BciT130I | CCWGG | 6 cut(s) | 30, 65, 343, 404, 568, 1235 |
| BclI | TGATCA | 3 cut(s) | 559, 621, 1110 |
| BcnI | CCSGG | 1 cut(s) | 122 |
| BcoDI | GTCTC | 4 cut(s) | 197, 401, 764, 975 |
| BfaI | CTAG | 2 cut(s) | 98, 1349 |
| BfmI | CTRYAG | 2 cut(s) | 391, 672 |
| BfoI | RGCGCY | 1 cut(s) | 64 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1022 |
| BisI | GCNGC | 6 cut(s) | 6, 434, 437, 797, 1283, 1538 |
| BlnI | CCTAGG | 1 cut(s) | 97 |
| BlsI | GCNGC | 6 cut(s) | 7, 435, 438, 798, 1284, 1539 |
| Bme1390I | CCNGG | 7 cut(s) | 30, 65, 122, 343, 404, 568, 1235 |
| Bme18I | GGWCC | 2 cut(s) | 33, 1308 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 46 |
| BmeT110I | CYCGRG | 1 cut(s) | 635 |
| BmgBI | CACGTC | 1 cut(s) | 295 |
| BmgT120I | GGNCC | 3 cut(s) | 33, 252, 1308 |
| BmiI | GGNNCC | 4 cut(s) | 34, 79, 326, 1215 |
| BmrFI | CCNGG | 7 cut(s) | 30, 65, 122, 343, 404, 568, 1235 |
| BmsI | GCATC | 3 cut(s) | 13, 1107, 1228 |
| BmtI | GCTAGC | 1 cut(s) | 1352 |
| BpiI | GAAGAC | 1 cut(s) | 289 |
| BpuEI | CTTGAG | 1 cut(s) | 677 |
| BpuMI | CCSGG | 1 cut(s) | 122 |
| BsaAI | YACGTR | 1 cut(s) | 901 |
| BsaHI | GRCGYC | 3 cut(s) | 68, 206, 420 |
| BsaJI | CCNNGG | 4 cut(s) | 29, 97, 248, 415 |
| BsaWI | WCCGGW | 1 cut(s) | 74 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 447, 1383 |
| Bse1I | ACTGG | 4 cut(s) | 445, 481, 499, 784 |
| BseAI | TCCGGA | 1 cut(s) | 74 |
| BseBI | CCWGG | 6 cut(s) | 30, 65, 343, 404, 568, 1235 |
| BseDI | CCNNGG | 4 cut(s) | 29, 97, 248, 415 |
| BseGI | GGATG | 6 cut(s) | 162, 1122, 1193, 1243, 1328, 1375 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 447, 1383 |
| BseMII | CTCAG | 3 cut(s) | 519, 562, 1094 |
| BseNI | ACTGG | 4 cut(s) | 445, 481, 499, 784 |
| BseRI | GAGGAG | 2 cut(s) | 296, 1226 |
| BseXI | GCAGC | 4 cut(s) | 423, 445, 808, 1294 |
| BseYI | CCCAGC | 1 cut(s) | 813 |
| Bsh1236I | CGCG | 3 cut(s) | 8, 168, 315 |
| Bsh1285I | CGRYCG | 1 cut(s) | 229 |
| BshFI | GGCC | 3 cut(s) | 5, 253, 783 |
| BsiEI | CGRYCG | 1 cut(s) | 229 |
| BsiHKAI | GWGCWC | 1 cut(s) | 642 |
| BsiHKCI | CYCGRG | 1 cut(s) | 635 |
| BsiSI | CCGG | 2 cut(s) | 75, 122 |
| BsiWI | CGTACG | 1 cut(s) | 9 |
| BslFI | GGGAC | 4 cut(s) | 46, 104, 395, 470 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 447, 1383 |
| BsmAI | GTCTC | 4 cut(s) | 197, 401, 764, 975 |
| BsmBI | CGTCTC | 1 cut(s) | 197 |
| BsmFI | GGGAC | 4 cut(s) | 46, 104, 395, 470 |
| BsmI | GAATGC | 1 cut(s) | 1302 |
| BsnI | GGCC | 3 cut(s) | 5, 253, 783 |
| BsoBI | CYCGRG | 1 cut(s) | 635 |
| Bsp1286I | GDGCHC | 2 cut(s) | 82, 642 |
| Bsp13I | TCCGGA | 1 cut(s) | 74 |
| Bsp1407I | TGTACA | 1 cut(s) | 936 |
| Bsp143I | GATC | 5 cut(s) | 186, 226, 559, 621, 1110 |
| Bsp19I | CCATGG | 1 cut(s) | 248 |
| BspACI | CCGC | 6 cut(s) | 6, 157, 166, 313, 328, 1537 |
| BspANI | GGCC | 3 cut(s) | 5, 253, 783 |
| BspCNI | CTCAG | 3 cut(s) | 520, 561, 1093 |
| BspEI | TCCGGA | 1 cut(s) | 74 |
| BspFNI | CGCG | 3 cut(s) | 8, 168, 315 |
| BspLI | GGNNCC | 4 cut(s) | 34, 79, 326, 1215 |
| BspOI | GCTAGC | 1 cut(s) | 1352 |
| BspPI | GGATC | 1 cut(s) | 181 |
| BspQI | GCTCTTC | 1 cut(s) | 239 |
| BsrGI | TGTACA | 1 cut(s) | 936 |
| BsrI | ACTGG | 4 cut(s) | 445, 481, 499, 784 |
| BssECI | CCNNGG | 4 cut(s) | 29, 97, 248, 415 |
| BssMI | GATC | 5 cut(s) | 186, 226, 559, 621, 1110 |
| BssNI | GRCGYC | 3 cut(s) | 68, 206, 420 |
| BssSI | CACGAG | 1 cut(s) | 641 |
| BssT1I | CCWWGG | 2 cut(s) | 97, 248 |
| Bst2BI | CACGAG | 1 cut(s) | 641 |
| Bst2UI | CCWGG | 6 cut(s) | 30, 65, 343, 404, 568, 1235 |
| Bst4CI | ACNGT | 7 cut(s) | 392, 555, 835, 978, 1041, 1072, 1290 |
| Bst6I | CTCTTC | 3 cut(s) | 239, 404, 1166 |
| BstACI | GRCGYC | 3 cut(s) | 68, 206, 420 |
| BstAUI | TGTACA | 1 cut(s) | 936 |
| BstBAI | YACGTR | 1 cut(s) | 901 |
| BstC8I | GCNNGC | 5 cut(s) | 600, 794, 1174, 1350, 1354 |
| BstDEI | CTNAG | 5 cut(s) | 510, 528, 548, 1080, 1179 |
| BstDSI | CCRYGG | 2 cut(s) | 248, 415 |
| BstF5I | GGATG | 6 cut(s) | 162, 1122, 1193, 1243, 1328, 1375 |
| BstFNI | CGCG | 3 cut(s) | 8, 168, 315 |
| BstH2I | RGCGCY | 1 cut(s) | 64 |
| BstHHI | GCGC | 1 cut(s) | 63 |
| BstKTI | GATC | 5 cut(s) | 189, 229, 562, 624, 1113 |
| BstMAI | GTCTC | 4 cut(s) | 197, 401, 764, 975 |
| BstMBI | GATC | 5 cut(s) | 186, 226, 559, 621, 1110 |
| BstMCI | CGRYCG | 1 cut(s) | 229 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 165, 789, 1022, 1349 |
| BstNI | CCWGG | 6 cut(s) | 30, 65, 343, 404, 568, 1235 |
| BstNSI | RCATGY | 2 cut(s) | 1176, 1421 |
| BstSCI | CCNGG | 7 cut(s) | 28, 63, 120, 341, 402, 566, 1233 |
| BstSFI | CTRYAG | 2 cut(s) | 391, 672 |
| BstUI | CGCG | 3 cut(s) | 8, 168, 315 |
| BstV1I | GCAGC | 4 cut(s) | 423, 445, 808, 1294 |
| BstV2I | GAAGAC | 1 cut(s) | 289 |
| BstX2I | RGATCY | 1 cut(s) | 186 |
| BstYI | RGATCY | 1 cut(s) | 186 |
| BsuRI | GGCC | 3 cut(s) | 5, 253, 783 |
| BtgI | CCRYGG | 2 cut(s) | 248, 415 |
| BtgZI | GCGATG | 1 cut(s) | 72 |
| BtrI | CACGTC | 1 cut(s) | 295 |
| BtsCI | GGATG | 6 cut(s) | 162, 1122, 1193, 1243, 1328, 1375 |
| BtsIMutI | CAGTG | 2 cut(s) | 452, 1037 |
| Cac8I | GCNNGC | 5 cut(s) | 600, 794, 1174, 1350, 1354 |
| CfoI | GCGC | 1 cut(s) | 63 |
| Cfr13I | GGNCC | 3 cut(s) | 33, 252, 1308 |
| CseI | GACGC | 4 cut(s) | 57, 272, 364, 409 |
| CviAII | CATG | 7 cut(s) | 249, 460, 619, 733, 1173, 1360, 1418 |
| DdeI | CTNAG | 5 cut(s) | 510, 528, 548, 1080, 1179 |
| DpnI | GATC | 5 cut(s) | 188, 228, 561, 623, 1112 |
| DpnII | GATC | 5 cut(s) | 186, 226, 559, 621, 1110 |
| DriI | GACNNNNNGTC | 1 cut(s) | 46 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 3 cut(s) | 239, 404, 1166 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 46 |
| EarI | CTCTTC | 3 cut(s) | 239, 404, 1166 |
| EciI | GGCGGA | 1 cut(s) | 317 |
| Eco130I | CCWWGG | 2 cut(s) | 97, 248 |
| Eco24I | GRGCYC | 1 cut(s) | 82 |
| Eco47I | GGWCC | 2 cut(s) | 33, 1308 |
| Eco57I | CTGAAG | 1 cut(s) | 380 |
| Eco88I | CYCGRG | 1 cut(s) | 635 |
| EcoO109I | RGGNCCY | 1 cut(s) | 33 |
| EcoRII | CCWGG | 6 cut(s) | 28, 63, 341, 402, 566, 1233 |
| EcoT14I | CCWWGG | 2 cut(s) | 97, 248 |
| EcoT22I | ATGCAT | 1 cut(s) | 1174 |
| EcoT38I | GRGCYC | 1 cut(s) | 82 |
| ErhI | CCWWGG | 2 cut(s) | 97, 248 |
| Esp3I | CGTCTC | 1 cut(s) | 197 |
| FaeI | CATG | 7 cut(s) | 252, 463, 622, 736, 1176, 1363, 1421 |
| FaqI | GGGAC | 4 cut(s) | 46, 104, 395, 470 |
| FatI | CATG | 7 cut(s) | 248, 459, 618, 732, 1172, 1359, 1417 |
| FbaI | TGATCA | 3 cut(s) | 559, 621, 1110 |
| FblI | GTMKAC | 3 cut(s) | 261, 282, 465 |
| Fnu4HI | GCNGC | 6 cut(s) | 6, 434, 437, 797, 1283, 1538 |
| FokI | GGATG | 6 cut(s) | 149, 1129, 1180, 1250, 1315, 1382 |
| FriOI | GRGCYC | 1 cut(s) | 82 |
| Fsp4HI | GCNGC | 6 cut(s) | 6, 434, 437, 797, 1283, 1538 |
| FspBI | CTAG | 2 cut(s) | 98, 1349 |
| GlaI | GCGC | 1 cut(s) | 62 |
| GluI | GCNGC | 6 cut(s) | 6, 434, 437, 797, 1283, 1538 |
| GsaI | CCCAGC | 1 cut(s) | 817 |
| HaeII | RGCGCY | 1 cut(s) | 64 |
| HaeIII | GGCC | 3 cut(s) | 5, 253, 783 |
| HapII | CCGG | 2 cut(s) | 75, 122 |
| HgaI | GACGC | 4 cut(s) | 57, 272, 364, 409 |
| HhaI | GCGC | 1 cut(s) | 63 |
| Hin1I | GRCGYC | 3 cut(s) | 68, 206, 420 |
| Hin1II | CATG | 7 cut(s) | 252, 463, 622, 736, 1176, 1363, 1421 |
| Hin6I | GCGC | 1 cut(s) | 61 |
| HinP1I | GCGC | 1 cut(s) | 61 |
| HincII | GTYRAC | 4 cut(s) | 262, 283, 466, 1398 |
| HindII | GTYRAC | 4 cut(s) | 262, 283, 466, 1398 |
| HindIII | AAGCTT | 2 cut(s) | 1055, 1550 |
| HinfI | GANTC | 7 cut(s) | 125, 369, 374, 631, 928, 1373, 1499 |
| HpaII | CCGG | 2 cut(s) | 75, 122 |
| HphI | GGTGA | 3 cut(s) | 779, 1063, 1112 |
| Hpy188I | TCNGA | 5 cut(s) | 226, 551, 630, 966, 1308 |
| Hpy188III | TCNNGA | 5 cut(s) | 75, 487, 635, 914, 1114 |
| HpyAV | CCTTC | 6 cut(s) | 554, 640, 644, 706, 1321, 1550 |
| HpyCH4III | ACNGT | 7 cut(s) | 392, 555, 835, 978, 1041, 1072, 1290 |
| HpyCH4IV | ACGT | 5 cut(s) | 47, 206, 279, 294, 900 |
| HpyCH4V | TGCA | 6 cut(s) | 26, 433, 598, 796, 1120, 1172 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 165, 789, 1022, 1349 |
| HpyF3I | CTNAG | 5 cut(s) | 510, 528, 548, 1080, 1179 |
| HpySE526I | ACGT | 5 cut(s) | 47, 206, 279, 294, 900 |
| Hsp92I | GRCGYC | 3 cut(s) | 68, 206, 420 |
| Hsp92II | CATG | 7 cut(s) | 252, 463, 622, 736, 1176, 1363, 1421 |
| HspAI | GCGC | 1 cut(s) | 61 |
| Kpn2I | TCCGGA | 1 cut(s) | 74 |
| Ksp22I | TGATCA | 3 cut(s) | 559, 621, 1110 |
| Kzo9I | GATC | 5 cut(s) | 186, 226, 559, 621, 1110 |
| LguI | GCTCTTC | 1 cut(s) | 239 |
| LmnI | GCTCC | 2 cut(s) | 77, 1213 |
| Lsp1109I | GCAGC | 4 cut(s) | 423, 445, 808, 1294 |
| LweI | GCATC | 3 cut(s) | 13, 1107, 1228 |
| MaeI | CTAG | 2 cut(s) | 98, 1349 |
| MaeII | ACGT | 5 cut(s) | 47, 206, 279, 294, 900 |
| MalI | GATC | 5 cut(s) | 188, 228, 561, 623, 1112 |
| MboI | GATC | 5 cut(s) | 186, 226, 559, 621, 1110 |
| MboII | GAAGA | 8 cut(s) | 32, 184, 226, 289, 391, 529, 1009, 1153 |
| MfeI | CAATTG | 1 cut(s) | 1253 |
| MflI | RGATCY | 1 cut(s) | 186 |
| MhlI | GDGCHC | 2 cut(s) | 82, 642 |
| MluCI | AATT | 7 cut(s) | 385, 909, 917, 1026, 1225, 1253, 1542 |
| MlyI | GAGTC | 2 cut(s) | 119, 368 |
| Mph1103I | ATGCAT | 1 cut(s) | 1174 |
| MroI | TCCGGA | 1 cut(s) | 74 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1262 |
| MseI | TTAA | 5 cut(s) | 426, 588, 921, 1224, 1316 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1364 |
| MspA1I | CMGCKG | 1 cut(s) | 436 |
| MspI | CCGG | 2 cut(s) | 75, 122 |
| MspR9I | CCNGG | 7 cut(s) | 30, 65, 122, 343, 404, 568, 1235 |
| MunI | CAATTG | 1 cut(s) | 1253 |
| Mva1269I | GAATGC | 1 cut(s) | 1302 |
| MvaI | CCWGG | 6 cut(s) | 30, 65, 343, 404, 568, 1235 |
| MvnI | CGCG | 3 cut(s) | 8, 168, 315 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 165, 789, 1022, 1349 |
| NciI | CCSGG | 1 cut(s) | 122 |
| NcoI | CCATGG | 1 cut(s) | 248 |
| NdeII | GATC | 5 cut(s) | 186, 226, 559, 621, 1110 |
| NheI | GCTAGC | 1 cut(s) | 1348 |
| NlaIII | CATG | 7 cut(s) | 252, 463, 622, 736, 1176, 1363, 1421 |
| NlaIV | GGNNCC | 4 cut(s) | 34, 79, 326, 1215 |
| NsiI | ATGCAT | 1 cut(s) | 1174 |
| NspI | RCATGY | 2 cut(s) | 1176, 1421 |
| PaeI | GCATGC | 1 cut(s) | 1176 |
| PaeR7I | CTCGAG | 1 cut(s) | 635 |
| PciSI | GCTCTTC | 1 cut(s) | 239 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 276, 471 |
| PctI | GAATGC | 1 cut(s) | 1302 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1262 |
| PfeI | GAWTC | 5 cut(s) | 369, 631, 928, 1373, 1499 |
| Pfl23II | CGTACG | 1 cut(s) | 9 |
| PflFI | GACNNNGTC | 4 cut(s) | 128, 266, 293, 461 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 447 |
| PfoI | TCCNGGA | 1 cut(s) | 120 |
| PkrI | GCNGC | 6 cut(s) | 7, 435, 438, 798, 1284, 1539 |
| Ple19I | CGATCG | 1 cut(s) | 229 |
| PleI | GAGTC | 2 cut(s) | 119, 368 |
| PpsI | GAGTC | 2 cut(s) | 119, 368 |
| Ppu21I | YACGTR | 1 cut(s) | 901 |
| PpuMI | RGGWCCY | 1 cut(s) | 33 |
| PsiI | TTATAA | 1 cut(s) | 690 |
| Psp5II | RGGWCCY | 1 cut(s) | 33 |
| Psp6I | CCWGG | 6 cut(s) | 28, 63, 341, 402, 566, 1233 |
| PspFI | CCCAGC | 1 cut(s) | 813 |
| PspGI | CCWGG | 6 cut(s) | 28, 63, 341, 402, 566, 1233 |
| PspLI | CGTACG | 1 cut(s) | 9 |
| PspN4I | GGNNCC | 4 cut(s) | 34, 79, 326, 1215 |
| PspPI | GGNCC | 3 cut(s) | 33, 252, 1308 |
| PspPPI | RGGWCCY | 1 cut(s) | 33 |
| PsuI | RGATCY | 1 cut(s) | 186 |
| PsyI | GACNNNGTC | 4 cut(s) | 128, 266, 293, 461 |
| PvuI | CGATCG | 1 cut(s) | 229 |
| PvuII | CAGCTG | 1 cut(s) | 436 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1364 |
| SalI | GTCGAC | 3 cut(s) | 260, 281, 464 |
| SapI | GCTCTTC | 1 cut(s) | 239 |
| SaqAI | TTAA | 5 cut(s) | 426, 588, 921, 1224, 1316 |
| SatI | GCNGC | 6 cut(s) | 6, 434, 437, 797, 1283, 1538 |
| Sau3AI | GATC | 5 cut(s) | 186, 226, 559, 621, 1110 |
| Sau96I | GGNCC | 3 cut(s) | 33, 252, 1308 |
| SchI | GAGTC | 2 cut(s) | 119, 368 |
| ScrFI | CCNGG | 7 cut(s) | 30, 65, 122, 343, 404, 568, 1235 |
| SduI | GDGCHC | 2 cut(s) | 82, 642 |
| SfaNI | GCATC | 3 cut(s) | 13, 1107, 1228 |
| SfcI | CTRYAG | 2 cut(s) | 391, 672 |
| Sfr274I | CTCGAG | 1 cut(s) | 635 |
| SgrDI | CGTCGACG | 1 cut(s) | 260 |
| SinI | GGWCC | 2 cut(s) | 33, 1308 |
| SlaI | CTCGAG | 1 cut(s) | 635 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1364 |
| SmlI | CTYRAG | 2 cut(s) | 635, 656 |
| SmoI | CTYRAG | 2 cut(s) | 635, 656 |
| SphI | GCATGC | 1 cut(s) | 1176 |
| Sse9I | AATT | 7 cut(s) | 385, 909, 917, 1026, 1225, 1253, 1542 |
| SsiI | CCGC | 6 cut(s) | 6, 157, 166, 313, 328, 1537 |
| SspMI | CTAG | 2 cut(s) | 98, 1349 |
| StyD4I | CCNGG | 7 cut(s) | 28, 63, 120, 341, 402, 566, 1233 |
| StyI | CCWWGG | 2 cut(s) | 97, 248 |
| TaaI | ACNGT | 7 cut(s) | 392, 555, 835, 978, 1041, 1072, 1290 |
| TaiI | ACGT | 5 cut(s) | 50, 209, 282, 297, 903 |
| TaqI | TCGA | 6 cut(s) | 261, 282, 372, 465, 636, 1497 |
| TasI | AATT | 7 cut(s) | 385, 909, 917, 1026, 1225, 1253, 1542 |
| TatI | WGTACW | 2 cut(s) | 501, 936 |
| TauI | GCSGC | 2 cut(s) | 8, 1540 |
| TfiI | GAWTC | 5 cut(s) | 369, 631, 928, 1373, 1499 |
| Tru1I | TTAA | 5 cut(s) | 426, 588, 921, 1224, 1316 |
| Tru9I | TTAA | 5 cut(s) | 426, 588, 921, 1224, 1316 |
| TscAI | CASTG | 2 cut(s) | 452, 1044 |
| TseI | GCWGC | 4 cut(s) | 433, 436, 796, 1282 |
| TspDTI | ATGAA | 7 cut(s) | 530, 1149, 1170, 1174, 1287, 1317, 1386 |
| TspGWI | ACGGA | 3 cut(s) | 118, 247, 1449 |
| TspRI | CASTG | 2 cut(s) | 452, 1044 |
| Tth111I | GACNNNGTC | 4 cut(s) | 128, 266, 293, 461 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 447 |
| VpaK11BI | GGWCC | 2 cut(s) | 33, 1308 |
| XapI | RAATTY | 1 cut(s) | 917 |
| XceI | RCATGY | 2 cut(s) | 1176, 1421 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1456 |
| XhoI | CTCGAG | 1 cut(s) | 635 |
| XmaJI | CCTAGG | 1 cut(s) | 97 |
| XmiI | GTMKAC | 3 cut(s) | 261, 282, 465 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1262 |
| XspI | CTAG | 2 cut(s) | 98, 1349 |
| ZraI | GACGTC | 1 cut(s) | 207 |
| Zsp2I | ATGCAT | 1 cut(s) | 1174 |