Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009536

Physical Location & Seq

Genomic Coordinates Reverse (-)

63700354 .. 63703423

Gene Structure 3070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G039810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGCGGCCTACGACTACGACGAGCCCTCGGCGACTCACCGCCCAGCCTCCTCCGACGCGCCGTCGCAGGAGCCCGGGTACGACCCGAACCACGTCCCTGACTCCGTGAAATCCTTCGTCGTCCATCTGTACCGCCACATCCGCGAGAAGAACGTGTACGAGATCCACCAGATGTACGAGACTTCGTTCCAGGGCATATCGGAGCGCCTCTTCAAGGACACGCCGTGGCCGTCCGTGGACGCCGTCGCGCACCACGTCGACAACGACCACGTGTTCTGCCTGCTCTACCGTGAGATGTGGTTCCGCCACCTCTACGCGAGGCTCCAGCCGACGCTGAAGCAGAGAATCGACTCGTGGGACAATTACTGTAGCCTTTTTCAGGTGGTTCTGCACGGCGTGGTCAATATGCAGCTGCCGAATCAGTGGCTGTGGGACATGGTGGATGAGTTTGTGTACCAGTTTCAGAGCTTCTGTCAGTATCGGGCTAAGATGAAGAACAAGACTGAGCAGGAGATTGCTCTTCTCAGGCAGTTTGATCAATATGGTGGGGTTGCTGCGGTGCATTGTCTTTTGGGTGATTATCATACTGGTCTGAAATGCTTGCAACCCATTGACATTAGTCAGCAAGGTGTTTACACCAGTGTGATTGGAAGCCACATTACCACCATATATCATTATGGTTTTGCCAATCTTATGTTGCGGAGGTATGTGGAGGCAATTCGTGAATTCAATAAGATTCTACTGTACATCTATAAGACCAAGCAATATCATCAGAAATCTCCTCAGTATGAGCAGATACTAAAGAAGAATGAGCAGATGTATGCATTGTTGGCAATTAGCCTTTCACTATGTCCCCAGGTTAAGCTTGTTGAAGAAACAGTGAATTCTCAGTTGCGTGAGAAGTATGGTGAAAAGATGATTAGAATGCAAAGATATGATGATGAAGCATTTGCTATCTATGATGAGCTCTTCTCCTATGCATGTCCTAAGTTCATTACTCCATCTGCTCCAAGTTTTGAGGAGCCTCTTGTTAATTACAACCAGGATGCATACAGACTTCAGTTGAAACTTTTCCTTTATGAAGTGAAGCAGCAACAGTTATTATCAGGTGTTAGGACCTTCTTAAAAGTCTATTCATCCATCTCTCTTGGGAACCTTGCGAAGTACATGGAAGTGGATGAATCCAAGTTGAGGACTATCTTGCTGACATACAAACACAAGACACATGCAGTTGACACTGATGGAAAAACCATTTCCAATGCTGATGTGGATTTTTATATGAACGATGATTGGGTTTATGTTGTTGACTCGAAACCACCAAAACGATATGGGGATTACTTCTTGCGTCAGATAGTGAAGCTTGAAGGGGCAATCAACGATCTGGACAGGATAAAGCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Paf67

Protein Analysis

467

Amino Acids

54.99

Weight (kDa)

6.29

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Paf67	PF10255	114 - 177	6e-28	RNA polymerase I-associated factor PAF67
Paf67	PF10255	183 - 453	4.5e-94	RNA polymerase I-associated factor PAF67

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25754 AT5G25757
fragaria_vesca	FvH4_2g36000 FvH4_2g36000 FvH4_2g36000 FvH4_2g36000
malus_domestica	MD08G1117100.v1.1 MD15G1096700.v1.1
prunus_persica	Prupe.1G451600_v2.0.a1
pyrus_communis	pycom08g09770 pycom15g08880
rosa_chinensis	RchiOBHm_Chr6g0305871
rosa_laevigata	RLG00000010851
rosa_multiflora	Rmu_sc0001809.1_g000044 Rmu_sc0032608.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162260
rosa_rugosa	Rorug06G0344500
rosa_samantha	Rh6AG456300 Rh6BG444900 Rh6CG470300 Rh6DG457000
rosa_wichuraiana	Rw6G039810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	4 cut(s)	59, 144, 248, 317
AciI	CCGC	7 cut(s)	5, 40, 133, 142, 304, 557, 700
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	725, 883
AcuI	CTGAAG	2 cut(s)	356, 1043
AcvI	CACGTG	1 cut(s)	271
AcyI	GRCGYC	1 cut(s)	240
AdeI	CACNNNGTG	2 cut(s)	225, 397
AfaI	GTAC	7 cut(s)	80, 131, 158, 176, 455, 746, 1166
AfiI	CCNNNNNNNGG	3 cut(s)	214, 379, 1191
AflIII	ACRYGT	2 cut(s)	153, 270
AgsI	TTSAA	5 cut(s)	214, 730, 872, 1066, 1364
AhdI	GACNNNNNGTC	1 cut(s)	61
AjiI	CACGTC	2 cut(s)	94, 256
AjnI	CCWGG	3 cut(s)	189, 855, 1041
AleI	CACNNNNGTG	1 cut(s)	641
AluBI	AGCT	6 cut(s)	412, 468, 865, 967, 1360, 1396
AluI	AGCT	6 cut(s)	412, 468, 865, 967, 1360, 1396
Alw21I	GWGCWC	1 cut(s)	969
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	1 cut(s)	157
AlwNI	CAGNNNCTG	1 cut(s)	427
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	6, 227
ApeKI	GCWGC	4 cut(s)	409, 412, 554, 1090
ApoI	RAATTY	2 cut(s)	725, 883
Asp700I	GAANNNNTTC	2 cut(s)	113, 1070
AspLEI	GCGC	3 cut(s)	61, 207, 250
AspS9I	GGNCC	1 cut(s)	1116
AsuC2I	CCSGG	2 cut(s)	75, 76
AsuHPI	GGTGA	3 cut(s)	29, 587, 920
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	1116
BanII	GRGCYC	3 cut(s)	27, 75, 969
BarI	GAAGNNNNNNTAC	4 cut(s)	140, 172, 643, 675
BauI	CACGAG	1 cut(s)	352
BbrPI	CACGTG	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	969
BbvI	GCAGC	4 cut(s)	399, 421, 541, 1102
BccI	CCATC	4 cut(s)	132, 1009, 1148, 1235
BceAI	ACGGC	5 cut(s)	46, 208, 214, 227, 409
BciT130I	CCWGG	3 cut(s)	191, 857, 1043
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	2 cut(s)	75, 76
BcoDI	GTCTC	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	367
BfoI	RGCGCY	1 cut(s)	208
BisI	GCNGC	5 cut(s)	6, 410, 413, 555, 1091
BlsI	GCNGC	5 cut(s)	7, 411, 414, 556, 1092
Bme1390I	CCNGG	5 cut(s)	75, 76, 191, 857, 1043
Bme18I	GGWCC	1 cut(s)	1116
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	74
BmgBI	CACGTC	2 cut(s)	94, 256
BmgT120I	GGNCC	1 cut(s)	1116
BmiI	GGNNCC	5 cut(s)	72, 302, 323, 1023, 1154
BmrFI	CCNGG	5 cut(s)	75, 76, 191, 857, 1043
BmsI	GCATC	1 cut(s)	1036
BoxI	GACNNNNGTC	1 cut(s)	618
BplI	GAGNNNNNCTC	2 cut(s)	956, 988
BpmI	CTGGAG	1 cut(s)	308
BpuMI	CCSGG	2 cut(s)	75, 76
BsaAI	YACGTR	1 cut(s)	271
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	6 cut(s)	27, 74, 190, 224, 234, 855
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 379, 1191
Bse1I	ACTGG	3 cut(s)	457, 592, 639
BseBI	CCWGG	3 cut(s)	191, 857, 1043
BseDI	CCNNGG	6 cut(s)	27, 74, 190, 224, 234, 855
BseGI	GGATG	5 cut(s)	138, 448, 1051, 1136, 1183
BseLI	CCNNNNNNNGG	3 cut(s)	214, 379, 1191
BseMII	CTCAG	4 cut(s)	495, 538, 797, 902
BseNI	ACTGG	3 cut(s)	457, 592, 639
BseRI	GAGGAG	3 cut(s)	40, 771, 1034
BseXI	GCAGC	4 cut(s)	399, 421, 541, 1102
BseYI	CCCAGC	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	374
Bsh1236I	CGCG	4 cut(s)	59, 144, 248, 317
BshFI	GGCC	2 cut(s)	8, 229
BsiHKAI	GWGCWC	1 cut(s)	969
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	4 cut(s)	80, 371, 446, 837
BslI	CCNNNNNNNGG	3 cut(s)	214, 379, 1191
BsmAI	GTCTC	1 cut(s)	173
BsmFI	GGGAC	4 cut(s)	80, 371, 446, 837
BsmI	GAATGC	1 cut(s)	930
BsnI	GGCC	2 cut(s)	8, 229
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	3 cut(s)	27, 75, 969
Bsp1407I	TGTACA	1 cut(s)	744
Bsp143I	GATC	3 cut(s)	162, 535, 1378
BspACI	CCGC	7 cut(s)	5, 40, 133, 142, 304, 557, 700
BspANI	GGCC	2 cut(s)	8, 229
BspCNI	CTCAG	4 cut(s)	496, 537, 796, 901
BspFNI	CGCG	4 cut(s)	59, 144, 248, 317
BspLI	GGNNCC	5 cut(s)	72, 302, 323, 1023, 1154
BspPI	GGATC	1 cut(s)	157
BspQI	GCTCTTC	2 cut(s)	525, 974
BsrGI	TGTACA	1 cut(s)	744
BsrI	ACTGG	3 cut(s)	457, 592, 639
BssECI	CCNNGG	6 cut(s)	27, 74, 190, 224, 234, 855
BssMI	GATC	3 cut(s)	162, 535, 1378
BssNI	GRCGYC	1 cut(s)	240
BssSI	CACGAG	1 cut(s)	352
Bst2BI	CACGAG	1 cut(s)	352
Bst2UI	CCWGG	3 cut(s)	191, 857, 1043
Bst4CI	ACNGT	5 cut(s)	290, 368, 744, 880, 1098
Bst6I	CTCTTC	3 cut(s)	215, 525, 974
BstACI	GRCGYC	1 cut(s)	240
BstAUI	TGTACA	1 cut(s)	744
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	2 cut(s)	281, 602
BstDEI	CTNAG	6 cut(s)	486, 504, 524, 783, 888, 987
BstDSI	CCRYGG	2 cut(s)	224, 234
BstENI	CCTNNNNNAGG	2 cut(s)	212, 377
BstF5I	GGATG	5 cut(s)	138, 448, 1051, 1136, 1183
BstFNI	CGCG	4 cut(s)	59, 144, 248, 317
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	3 cut(s)	61, 207, 250
BstKTI	GATC	3 cut(s)	165, 538, 1381
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	3 cut(s)	162, 535, 1378
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 830
BstNI	CCWGG	3 cut(s)	191, 857, 1043
BstNSI	RCATGY	2 cut(s)	984, 1229
BstPAI	GACNNNNGTC	1 cut(s)	618
BstSCI	CCNGG	5 cut(s)	73, 74, 189, 855, 1041
BstSFI	CTRYAG	1 cut(s)	367
BstUI	CGCG	4 cut(s)	59, 144, 248, 317
BstV1I	GCAGC	4 cut(s)	399, 421, 541, 1102
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	8, 229
BtgI	CCRYGG	2 cut(s)	224, 234
BtrI	CACGTC	2 cut(s)	94, 256
BtsCI	GGATG	5 cut(s)	138, 448, 1051, 1136, 1183
BtsIMutI	CAGTG	4 cut(s)	428, 646, 885, 1236
Cac8I	GCNNGC	2 cut(s)	281, 602
CaiI	CAGNNNCTG	1 cut(s)	427
CfoI	GCGC	3 cut(s)	61, 207, 250
Cfr13I	GGNCC	1 cut(s)	1116
Cfr9I	CCCGGG	1 cut(s)	74
CseI	GACGC	4 cut(s)	65, 248, 340, 1334
Csp6I	GTAC	7 cut(s)	79, 130, 157, 175, 454, 745, 1165
CviAII	CATG	4 cut(s)	436, 981, 1168, 1226
CviQI	GTAC	7 cut(s)	79, 130, 157, 175, 454, 745, 1165
DdeI	CTNAG	6 cut(s)	486, 504, 524, 783, 888, 987
DpnI	GATC	3 cut(s)	164, 537, 1380
DpnII	GATC	3 cut(s)	162, 535, 1378
DraIII	CACNNNGTG	2 cut(s)	225, 397
DriI	GACNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	227
Eam1104I	CTCTTC	3 cut(s)	215, 525, 974
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EarI	CTCTTC	3 cut(s)	215, 525, 974
EciI	GGCGGA	1 cut(s)	293
Ecl136II	GAGCTC	1 cut(s)	967
Eco24I	GRGCYC	3 cut(s)	27, 75, 969
Eco47I	GGWCC	1 cut(s)	1116
Eco53kI	GAGCTC	1 cut(s)	967
Eco57I	CTGAAG	2 cut(s)	356, 1043
Eco72I	CACGTG	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	967
EcoNI	CCTNNNNNAGG	2 cut(s)	212, 377
EcoO109I	RGGNCCY	1 cut(s)	1116
EcoRI	GAATTC	2 cut(s)	725, 883
EcoRII	CCWGG	3 cut(s)	189, 855, 1041
EcoT22I	ATGCAT	3 cut(s)	826, 982, 1051
EcoT38I	GRGCYC	3 cut(s)	27, 75, 969
FaeI	CATG	4 cut(s)	439, 984, 1171, 1229
FaqI	GGGAC	4 cut(s)	80, 371, 446, 837
FatI	CATG	4 cut(s)	435, 980, 1167, 1225
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	5 cut(s)	6, 410, 413, 555, 1091
FokI	GGATG	5 cut(s)	125, 455, 1058, 1123, 1190
FriOI	GRGCYC	3 cut(s)	27, 75, 969
Fsp4HI	GCNGC	5 cut(s)	6, 410, 413, 555, 1091
GlaI	GCGC	3 cut(s)	60, 206, 249
GluI	GCNGC	5 cut(s)	6, 410, 413, 555, 1091
GsaI	CCCAGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	8, 229
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	4 cut(s)	65, 248, 340, 1334
HhaI	GCGC	3 cut(s)	61, 207, 250
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	4 cut(s)	439, 984, 1171, 1229
Hin6I	GCGC	3 cut(s)	59, 205, 248
HinP1I	GCGC	3 cut(s)	59, 205, 248
HincII	GTYRAC	3 cut(s)	259, 1234, 1306
HindII	GTYRAC	3 cut(s)	259, 1234, 1306
HindIII	AAGCTT	2 cut(s)	863, 1358
HinfI	GANTC	8 cut(s)	34, 101, 345, 350, 418, 736, 1181, 1307
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	3 cut(s)	29, 587, 920
Hpy166II	GTNNAC	7 cut(s)	157, 238, 259, 454, 634, 1234, 1306
Hpy188I	TCNGA	6 cut(s)	55, 202, 465, 594, 774, 1350
Hpy188III	TCNNGA	2 cut(s)	722, 1382
Hpy8I	GTNNAC	7 cut(s)	157, 238, 259, 454, 634, 1234, 1306
Hpy99I	CGWCG	7 cut(s)	23, 59, 67, 122, 248, 260, 334
HpyAV	CCTTC	3 cut(s)	124, 1129, 1358
HpyCH4III	ACNGT	5 cut(s)	290, 368, 744, 880, 1098
HpyCH4IV	ACGT	4 cut(s)	93, 153, 255, 270
HpyCH4V	TGCA	9 cut(s)	391, 409, 562, 604, 824, 928, 980, 1049, 1229
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 830
HpyF3I	CTNAG	6 cut(s)	486, 504, 524, 783, 888, 987
HpySE526I	ACGT	4 cut(s)	93, 153, 255, 270
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	4 cut(s)	439, 984, 1171, 1229
HspAI	GCGC	3 cut(s)	59, 205, 248
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	162, 535, 1378
LguI	GCTCTTC	2 cut(s)	525, 974
LmnI	GCTCC	5 cut(s)	70, 202, 327, 1012, 1021
Lsp1109I	GCAGC	4 cut(s)	399, 421, 541, 1102
LweI	GCATC	1 cut(s)	1036
MaeII	ACGT	4 cut(s)	93, 153, 255, 270
MalI	GATC	3 cut(s)	164, 537, 1380
MboI	GATC	3 cut(s)	162, 535, 1378
MboII	GAAGA	7 cut(s)	160, 202, 505, 512, 817, 884, 961
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	3 cut(s)	27, 75, 969
MluCI	AATT	6 cut(s)	361, 717, 725, 834, 883, 1033
MlyI	GAGTC	4 cut(s)	28, 95, 344, 1301
MmeI	TCCRAC	1 cut(s)	78
Mph1103I	ATGCAT	3 cut(s)	826, 982, 1051
MroXI	GAANNNNTTC	2 cut(s)	113, 1070
MseI	TTAA	3 cut(s)	861, 1032, 1124
MslI	CAYNNNNRTG	2 cut(s)	641, 1172
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	5 cut(s)	75, 76, 191, 857, 1043
Mva1269I	GAATGC	1 cut(s)	930
MvaI	CCWGG	3 cut(s)	191, 857, 1043
MvnI	CGCG	4 cut(s)	59, 144, 248, 317
MwoI	GCNNNNNNNGC	2 cut(s)	141, 830
NciI	CCSGG	2 cut(s)	75, 76
NdeII	GATC	3 cut(s)	162, 535, 1378
NlaIII	CATG	4 cut(s)	439, 984, 1171, 1229
NlaIV	GGNNCC	5 cut(s)	72, 302, 323, 1023, 1154
NmeAIII	GCCGAG	1 cut(s)	8
NsiI	ATGCAT	3 cut(s)	826, 982, 1051
NspI	RCATGY	2 cut(s)	984, 1229
OliI	CACNNNNGTG	1 cut(s)	641
PciSI	GCTCTTC	2 cut(s)	525, 974
PcsI	WCGNNNNNNNCGW	4 cut(s)	18, 227, 252, 261
PctI	GAATGC	1 cut(s)	930
PdmI	GAANNNNTTC	2 cut(s)	113, 1070
PfeI	GAWTC	4 cut(s)	345, 418, 736, 1181
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	5 cut(s)	7, 411, 414, 556, 1092
PleI	GAGTC	4 cut(s)	28, 95, 344, 1301
PmaCI	CACGTG	1 cut(s)	271
PmlI	CACGTG	1 cut(s)	271
PpsI	GAGTC	4 cut(s)	28, 95, 344, 1301
Ppu21I	YACGTR	1 cut(s)	271
PpuMI	RGGWCCY	1 cut(s)	1116
PshAI	GACNNNNGTC	1 cut(s)	618
Psp124BI	GAGCTC	1 cut(s)	969
Psp5II	RGGWCCY	1 cut(s)	1116
Psp6I	CCWGG	3 cut(s)	189, 855, 1041
PspCI	CACGTG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	43
PspGI	CCWGG	3 cut(s)	189, 855, 1041
PspN4I	GGNNCC	5 cut(s)	72, 302, 323, 1023, 1154
PspPI	GGNCC	1 cut(s)	1116
PspPPI	RGGWCCY	1 cut(s)	1116
PstNI	CAGNNNCTG	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	162
PsyI	GACNNNGTC	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	412
RsaI	GTAC	7 cut(s)	80, 131, 158, 176, 455, 746, 1166
RsaNI	GTAC	7 cut(s)	79, 130, 157, 175, 454, 745, 1165
RseI	CAYNNNNRTG	2 cut(s)	641, 1172
SacI	GAGCTC	1 cut(s)	969
SalI	GTCGAC	1 cut(s)	257
SapI	GCTCTTC	2 cut(s)	525, 974
SaqAI	TTAA	3 cut(s)	861, 1032, 1124
SatI	GCNGC	5 cut(s)	6, 410, 413, 555, 1091
Sau3AI	GATC	3 cut(s)	162, 535, 1378
Sau96I	GGNCC	1 cut(s)	1116
SchI	GAGTC	4 cut(s)	28, 95, 344, 1301
ScrFI	CCNGG	5 cut(s)	75, 76, 191, 857, 1043
SduI	GDGCHC	3 cut(s)	27, 75, 969
SfaNI	GCATC	1 cut(s)	1036
SfcI	CTRYAG	1 cut(s)	367
SinI	GGWCC	1 cut(s)	1116
SmaI	CCCGGG	1 cut(s)	76
SmiMI	CAYNNNNRTG	2 cut(s)	641, 1172
Sse9I	AATT	6 cut(s)	361, 717, 725, 834, 883, 1033
SsiI	CCGC	7 cut(s)	5, 40, 133, 142, 304, 557, 700
SstI	GAGCTC	1 cut(s)	969
StyD4I	CCNGG	5 cut(s)	73, 74, 189, 855, 1041
TaaI	ACNGT	5 cut(s)	290, 368, 744, 880, 1098
TaiI	ACGT	4 cut(s)	96, 156, 258, 273
TaqI	TCGA	3 cut(s)	258, 348, 1310
TasI	AATT	6 cut(s)	361, 717, 725, 834, 883, 1033
TatI	WGTACW	2 cut(s)	744, 1164
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	4 cut(s)	345, 418, 736, 1181
Tru1I	TTAA	3 cut(s)	861, 1032, 1124
Tru9I	TTAA	3 cut(s)	861, 1032, 1124
TscAI	CASTG	4 cut(s)	428, 646, 885, 1243
TseI	GCWGC	4 cut(s)	409, 412, 554, 1090
TspDTI	ATGAA	7 cut(s)	506, 957, 982, 1095, 1125, 1194, 1295
TspGWI	ACGGA	2 cut(s)	94, 223
TspMI	CCCGGG	1 cut(s)	74
TspRI	CASTG	4 cut(s)	428, 646, 885, 1243
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	1116
XagI	CCTNNNNNAGG	2 cut(s)	212, 377
XapI	RAATTY	2 cut(s)	725, 883
XceI	RCATGY	2 cut(s)	984, 1229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1264
XmaI	CCCGGG	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	2 cut(s)	113, 1070
Zsp2I	ATGCAT	3 cut(s)	826, 982, 1051

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.