Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012141

Physical Location & Seq

Genomic Coordinates Forward (+)

38070908 .. 38073047

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G452600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCCCCAACTGTTTCAGTTACAGTTGCAGCATCTTCAACCTCTCCTCAAACCTCGTCACCCCAACCGCCAACTACTTCTCCCCACCCTCACTCTCAGCTTTCCTTCTTCTCTCTCCAATCCCCTAAAACGCACCAAACCCAACAAGCTGCGCCCTCTTCTTCCCCCCACCGTTCGATTGCCCAGCCCCATAGTATGCAAATCCAACAGCTTAGACTTAGACATTTTATCACAGCCAGAAGAGAGAGGGAAGCCGCACAGACGGGCCAATGGGATATTTTGGATCATACTTGCTAATCTCGGGATTTACATTGCTGATCATGTGTTTCAGGTTCGTGCAATTAAAATGCTGTACCTCTACCACAACTGGCCTACTTGGTACCAGTTTCTAACAGCAACATTTTGCCATGCTAATTGGAACCATCTTTCGAGCAACCTTTTCTTCTTGTATATTTTTGGAAAGCTAGTTGAAGAAGAGGAAGGAAATTTTGCTCTGTGGCTTTGTTATATTCTTACAGGGGTTGGAGCAAACCTTGTTTCATGGCTTGTTCTACCAAGAAATGCAGTCTCGGTTGGAGCCTCTGGTGCTGTTTTTGGTTTATTTACAATCAGTGTACTAGTAAAGATGTCCTGGGACTGGAGAAAGATCCTTGAAGTGCTTATATTGGGCCAATTTGTTATAGAGAAGGTTATGGAAGCAGCTCAAGCTTCTACTGCATTATCGGGCCCCTTCGGCGGAGGCAGTTCTTTGATGAATGTCAATCACATTGCACATCTCTCAGGTGCTCTTGTTGGTGTTTTTCTAGTATGGATTCTCAGCAAGGTTCCTTCTGAACCCCCAGCACAAGGATCAAATTTTCAAAACAAAACAAGCAGAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0019904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

294

Amino Acids

32.87

Weight (kDa)

9.8

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25640
fragaria_vesca	FvH4_2g36120 FvH4_2g36120 FvH4_2g36120 FvH4_2g36120
malus_domestica	MD15G1097700.v1.1
prunus_persica	Prupe.1G452600_v2.0.a1
pyrus_communis	pycom08g09880 pycom15g08960
rosa_chinensis	RchiOBHm_Chr6g0305751
rosa_laevigata	RLG00000010862
rosa_multiflora	Rmu_sc0042960.1_g000002
rosa_roxburghii	Rroxscaffold_7G00162380
rosa_rugosa	Rorug06G0343900.1
rosa_samantha	Rh6AG455300 Rh6BG446000 Rh6CG469200 Rh6DG455800
rosa_wichuraiana	Rw6G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	378
AccB1I	GGYRCC	1 cut(s)	378
AciI	CCGC	3 cut(s)	67, 254, 735
AclWI	GGATC	3 cut(s)	290, 640, 856
AcsI	RAATTY	2 cut(s)	484, 853
AfaI	GTAC	3 cut(s)	353, 380, 615
AfiI	CCNNNNNNNGG	3 cut(s)	636, 734, 845
AgsI	TTSAA	4 cut(s)	38, 470, 653, 860
AhlI	ACTAGT	1 cut(s)	616
AjnI	CCWGG	1 cut(s)	629
AluBI	AGCT	6 cut(s)	99, 148, 210, 463, 701, 707
AluI	AGCT	6 cut(s)	99, 148, 210, 463, 701, 707
Alw21I	GWGCWC	1 cut(s)	787
Alw26I	GTCTC	1 cut(s)	571
AlwI	GGATC	3 cut(s)	290, 640, 856
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	4 cut(s)	264, 368, 667, 724
ApaI	GGGCCC	1 cut(s)	728
ApeKI	GCWGC	3 cut(s)	28, 148, 698
ApoI	RAATTY	2 cut(s)	484, 853
Asp718I	GGTACC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	4 cut(s)	264, 667, 724, 725
AsuHPI	GGTGA	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	728
BanI	GGYRCC	1 cut(s)	378
BanII	GRGCYC	1 cut(s)	728
Bbv12I	GWGCWC	1 cut(s)	787
BbvI	GCAGC	3 cut(s)	40, 135, 710
BccI	CCATC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	631
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	571
BcuI	ACTAGT	1 cut(s)	616
BfaI	CTAG	3 cut(s)	464, 617, 803
BglI	GCCNNNNNGGC	1 cut(s)	732
BisI	GCNGC	4 cut(s)	29, 149, 254, 699
BlsI	GCNGC	4 cut(s)	30, 150, 255, 700
Bme1390I	CCNGG	1 cut(s)	631
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	4 cut(s)	264, 667, 724, 725
BmiI	GGNNCC	6 cut(s)	380, 419, 577, 726, 727, 825
BmrFI	CCNGG	1 cut(s)	631
BmsI	GCATC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	658
BpuEI	CTTGAG	1 cut(s)	687
BsaJI	CCNNGG	1 cut(s)	630
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	3 cut(s)	636, 734, 845
Bse1I	ACTGG	3 cut(s)	371, 382, 641
Bse3DI	GCAATG	2 cut(s)	309, 765
BseBI	CCWGG	1 cut(s)	631
BseDI	CCNNGG	1 cut(s)	630
BseLI	CCNNNNNNNGG	3 cut(s)	636, 734, 845
BseMI	GCAATG	2 cut(s)	309, 765
BseMII	CTCAG	3 cut(s)	109, 792, 829
BseNI	ACTGG	3 cut(s)	371, 382, 641
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	728
BseXI	GCAGC	3 cut(s)	40, 135, 710
BseYI	CCCAGC	2 cut(s)	182, 838
BshFI	GGCC	4 cut(s)	266, 370, 669, 726
BshNI	GGYRCC	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	787
BsiHKCI	CYCGRG	1 cut(s)	299
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	3 cut(s)	636, 734, 845
BsmAI	GTCTC	1 cut(s)	571
BsmFI	GGGAC	1 cut(s)	647
BsnI	GGCC	4 cut(s)	266, 370, 669, 726
BsoBI	CYCGRG	1 cut(s)	299
Bsp120I	GGGCCC	1 cut(s)	724
Bsp1286I	GDGCHC	2 cut(s)	728, 787
Bsp143I	GATC	4 cut(s)	282, 316, 645, 848
BspACI	CCGC	3 cut(s)	67, 254, 735
BspANI	GGCC	4 cut(s)	266, 370, 669, 726
BspCNI	CTCAG	3 cut(s)	108, 791, 828
BspLI	GGNNCC	6 cut(s)	380, 419, 577, 726, 727, 825
BspPI	GGATC	3 cut(s)	290, 640, 856
BspT107I	GGYRCC	1 cut(s)	378
BsrDI	GCAATG	2 cut(s)	309, 765
BsrI	ACTGG	3 cut(s)	371, 382, 641
BssECI	CCNNGG	1 cut(s)	630
BssMI	GATC	4 cut(s)	282, 316, 645, 848
Bst2UI	CCWGG	1 cut(s)	631
Bst4CI	ACNGT	3 cut(s)	12, 24, 172
Bst6I	CTCTTC	3 cut(s)	162, 234, 468
BstDEI	CTNAG	5 cut(s)	95, 211, 217, 778, 815
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	4 cut(s)	285, 319, 648, 851
BstMAI	GTCTC	1 cut(s)	571
BstMBI	GATC	4 cut(s)	282, 316, 645, 848
BstMWI	GCNNNNNNNGC	4 cut(s)	584, 704, 713, 732
BstNI	CCWGG	1 cut(s)	631
BstSCI	CCNGG	1 cut(s)	629
BstSLI	GKGCMC	1 cut(s)	728
BstV1I	GCAGC	3 cut(s)	40, 135, 710
BstX2I	RGATCY	1 cut(s)	645
BstYI	RGATCY	1 cut(s)	645
BsuRI	GGCC	4 cut(s)	266, 370, 669, 726
BtsIMutI	CAGTG	1 cut(s)	616
CfoI	GCGC	1 cut(s)	153
Cfr13I	GGNCC	4 cut(s)	264, 667, 724, 725
Csp6I	GTAC	3 cut(s)	352, 379, 614
CviAII	CATG	3 cut(s)	320, 407, 540
CviQI	GTAC	3 cut(s)	352, 379, 614
DdeI	CTNAG	5 cut(s)	95, 211, 217, 778, 815
DpnI	GATC	4 cut(s)	284, 318, 647, 850
DpnII	GATC	4 cut(s)	282, 316, 645, 848
Eam1104I	CTCTTC	3 cut(s)	162, 234, 468
EarI	CTCTTC	3 cut(s)	162, 234, 468
EciI	GGCGGA	1 cut(s)	750
Eco24I	GRGCYC	1 cut(s)	728
Eco88I	CYCGRG	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	629
EcoT38I	GRGCYC	1 cut(s)	728
FaeI	CATG	3 cut(s)	323, 410, 543
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	3 cut(s)	319, 406, 539
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	4 cut(s)	29, 149, 254, 699
FriOI	GRGCYC	1 cut(s)	728
Fsp4HI	GCNGC	4 cut(s)	29, 149, 254, 699
FspBI	CTAG	3 cut(s)	464, 617, 803
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	4 cut(s)	29, 149, 254, 699
GsaI	CCCAGC	2 cut(s)	186, 842
GsuI	CTGGAG	1 cut(s)	658
HaeIII	GGCC	4 cut(s)	266, 370, 669, 726
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	323, 410, 543
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	705
HinfI	GANTC	1 cut(s)	811
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	614
Hpy188I	TCNGA	1 cut(s)	832
Hpy188III	TCNNGA	1 cut(s)	301
Hpy8I	GTNNAC	1 cut(s)	614
HpyAV	CCTTC	5 cut(s)	114, 473, 679, 739, 837
HpyCH4III	ACNGT	3 cut(s)	12, 24, 172
HpyCH4V	TGCA	6 cut(s)	28, 198, 338, 563, 716, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	584, 704, 713, 732
HpyF3I	CTNAG	5 cut(s)	95, 211, 217, 778, 815
Hsp92II	CATG	3 cut(s)	323, 410, 543
HspAI	GCGC	1 cut(s)	151
KpnI	GGTACC	1 cut(s)	382
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	282, 316, 645, 848
LmnI	GCTCC	2 cut(s)	524, 575
Lsp1109I	GCAGC	3 cut(s)	40, 135, 710
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	3 cut(s)	464, 617, 803
MaeIII	GTNAC	2 cut(s)	18, 56
MalI	GATC	4 cut(s)	284, 318, 647, 850
MboI	GATC	4 cut(s)	282, 316, 645, 848
MboII	GAAGA	8 cut(s)	26, 99, 149, 152, 251, 433, 482, 485
MflI	RGATCY	1 cut(s)	645
MhlI	GDGCHC	2 cut(s)	728, 787
MluCI	AATT	5 cut(s)	339, 412, 484, 671, 853
MmeI	TCCRAC	3 cut(s)	228, 502, 553
MseI	TTAA	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	631
MvaI	CCWGG	1 cut(s)	631
MwoI	GCNNNNNNNGC	4 cut(s)	584, 704, 713, 732
NdeII	GATC	4 cut(s)	282, 316, 645, 848
NlaIII	CATG	3 cut(s)	323, 410, 543
NlaIV	GGNNCC	6 cut(s)	380, 419, 577, 726, 727, 825
NmuCI	GTSAC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	811
PkrI	GCNGC	4 cut(s)	30, 150, 255, 700
Psp6I	CCWGG	1 cut(s)	629
PspFI	CCCAGC	2 cut(s)	182, 838
PspGI	CCWGG	1 cut(s)	629
PspN4I	GGNNCC	6 cut(s)	380, 419, 577, 726, 727, 825
PspOMI	GGGCCC	1 cut(s)	724
PspPI	GGNCC	4 cut(s)	264, 667, 724, 725
PsuI	RGATCY	1 cut(s)	645
RsaI	GTAC	3 cut(s)	353, 380, 615
RsaNI	GTAC	3 cut(s)	352, 379, 614
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	4 cut(s)	29, 149, 254, 699
Sau3AI	GATC	4 cut(s)	282, 316, 645, 848
Sau96I	GGNCC	4 cut(s)	264, 667, 724, 725
ScrFI	CCNGG	1 cut(s)	631
SduI	GDGCHC	2 cut(s)	728, 787
SfaNI	GCATC	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	702
SmoI	CTYRAG	1 cut(s)	702
SpeI	ACTAGT	1 cut(s)	616
Sse9I	AATT	5 cut(s)	339, 412, 484, 671, 853
SsiI	CCGC	3 cut(s)	67, 254, 735
SspMI	CTAG	3 cut(s)	464, 617, 803
StyD4I	CCNGG	1 cut(s)	629
TaaI	ACNGT	3 cut(s)	12, 24, 172
TaqI	TCGA	2 cut(s)	175, 428
TasI	AATT	5 cut(s)	339, 412, 484, 671, 853
TatI	WGTACW	1 cut(s)	613
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	1 cut(s)	811
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	3 cut(s)	28, 148, 698
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	528, 767
TspRI	CASTG	1 cut(s)	616
XapI	RAATTY	2 cut(s)	484, 853
XspI	CTAG	3 cut(s)	464, 617, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.