Rh6AG455300

Rhomboid family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012141
Physical Location & Seq
Reverse (-)
64011011 .. 64012670
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG455300.1

Sequence Viewer

Length: 885 bp
ATGGGTCAGTTTCAGGTCCACCATGTTCAAACCCTTACTAAACCTCACTACTCTTACTCATCCCAGTCCCTCCATCCAGTCCCAATCACTTGCTTCCCTCATCGTATTCGTCCCAACCTCACTCTCACCTTCCCTCATTCCCTCTCTACTTCCCAAAACCACCCCAAACCCCTCCACCTCCCTCTCCGCACCGCCGTCCGATCTCGCATAGTCTGCAAATCGAGCGGCTCAGAATTTGACATCCTATCGCAGCCAGAAGAGAGAAGAAGACCTCACAGACGCGCCAATGGAATATTCTGGATTTTACTTATTAATATCGGAATATACTTGGCCGATCATATTTTTCAGGTTCGCGCAGTTAAAATGCTATACTTGTATCACAGTTACCCTGAATGGTACCAGTTTCTAACAGCAACGTTCTGCCATGCTAATTGGAACCATCTTTCGAGCAACCTTTTCTTCTTGTATATTTTCGGAAAGCTAGTTGAAGAAGATGAAGGAAATCTCGCACTGTGGCTCTCTTATATTCTTACAGGTGTTGGAGCTAACTTTGTTTCGTGGCTTGCTCTACCGACAAATGCAGTTTCTATTGGAGCTTCTGGTGCTGTTTTTGGATTGTTTACTATCAGTGTTCTTGTAAAGATGTCCTGGGACTGGAGGAAGATACTTGAAGTTCTTATATTGGGCCAATTTGTTATAGACAAGGTTATGGAAGCAGCCCAAGCTTCGACAGGATTAGCAGGCCGCGGAGGCTCCTCTTTGATGAATGTCAATCACATTGCGCATCTCTCAGGTGCTCTTGTTGGTGTATTTCTAGTATGGCTTCTTGGTAGAATTCCTTCTGAACCTCCAAAACAAGAAGGATTGGATTTGAAAAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0019904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid

Protein Analysis

294

Amino Acids

33.17

Weight (kDa)

9.56

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 131 - 278 3.8e-27 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25640
fragaria_vesca FvH4_2g36120 FvH4_2g36120 FvH4_2g36120 FvH4_2g36120
malus_domestica MD15G1097700.v1.1
prunus_persica Prupe.1G452600_v2.0.a1
pyrus_communis pycom08g09880 pycom15g08960
rosa_chinensis RchiOBHm_Chr6g0305751
rosa_laevigata RLG00000010862
rosa_multiflora Rmu_sc0042960.1_g000002
rosa_roxburghii Rroxscaffold_7G00162380
rosa_rugosa Rorug06G0343900.1
rosa_samantha Rh6AG455300 Rh6BG446000 Rh6CG469200 Rh6DG455800
rosa_wichuraiana Rw6G039720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 783
Acc65I GGTACC 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 396
AccBSI CCGCTC 1 cut(s) 225
AccII CGCG 3 cut(s) 282, 354, 747
AciI CCGC 5 cut(s) 187, 192, 225, 745, 747
AclI AACGTT 1 cut(s) 416
AcoI YGGCCR 1 cut(s) 330
AcsI RAATTY 2 cut(s) 233, 834
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 654
AgsI TTSAA 4 cut(s) 29, 488, 671, 874
AjnI CCWGG 1 cut(s) 647
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 4 cut(s) 481, 545, 596, 725
AluI AGCT 4 cut(s) 481, 545, 596, 725
Alw21I GWGCWC 1 cut(s) 799
AoxI GGCC 3 cut(s) 330, 685, 742
ApeKI GCWGC 2 cut(s) 250, 716
ApoI RAATTY 2 cut(s) 233, 834
AseI ATTAAT 1 cut(s) 312
Asp700I GAANNNNTTC 1 cut(s) 838
Asp718I GGTACC 1 cut(s) 396
AspLEI GCGC 3 cut(s) 284, 356, 784
AspS9I GGNCC 2 cut(s) 16, 685
AsuHPI GGTGA 1 cut(s) 118
AvaII GGWCC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 396
BarI GAAGNNNNNNTAC 2 cut(s) 823, 855
BbsI GAAGAC 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 799
BbvI GCAGC 2 cut(s) 262, 728
BccI CCATC 2 cut(s) 81, 447
BceAI ACGGC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 649
BfaI CTAG 2 cut(s) 482, 815
BglI GCCNNNNNGGC 1 cut(s) 750
BisI GCNGC 4 cut(s) 226, 251, 717, 745
BlsI GCNGC 4 cut(s) 227, 252, 718, 746
Bme1390I CCNGG 1 cut(s) 649
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 2 cut(s) 16, 685
BmiI GGNNCC 3 cut(s) 398, 437, 754
BmrFI CCNGG 1 cut(s) 649
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 793
BmuI ACTGGG 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 676
BsaJI CCNNGG 2 cut(s) 648, 745
Bsc4I CCNNNNNNNGG 1 cut(s) 654
Bse1I ACTGG 4 cut(s) 64, 77, 400, 659
Bse3DI GCAATG 1 cut(s) 777
BseBI CCWGG 1 cut(s) 649
BseDI CCNNGG 2 cut(s) 648, 745
BseGI GGATG 3 cut(s) 59, 73, 240
BseLI CCNNNNNNNGG 1 cut(s) 654
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 2 cut(s) 243, 804
BseNI ACTGG 4 cut(s) 64, 77, 400, 659
BseRI GAGGAG 1 cut(s) 745
BseXI GCAGC 2 cut(s) 262, 728
Bsh1236I CGCG 3 cut(s) 282, 354, 747
BshFI GGCC 3 cut(s) 332, 687, 744
BshNI GGYRCC 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 799
BslFI GGGAC 4 cut(s) 52, 65, 96, 665
BslI CCNNNNNNNGG 1 cut(s) 654
BsmFI GGGAC 4 cut(s) 52, 65, 96, 665
BsnI GGCC 3 cut(s) 332, 687, 744
Bsp1286I GDGCHC 1 cut(s) 799
Bsp143I GATC 2 cut(s) 200, 334
BspACI CCGC 5 cut(s) 187, 192, 225, 745, 747
BspANI GGCC 3 cut(s) 332, 687, 744
BspCNI CTCAG 2 cut(s) 242, 803
BspFNI CGCG 3 cut(s) 282, 354, 747
BspLI GGNNCC 3 cut(s) 398, 437, 754
BspT107I GGYRCC 1 cut(s) 396
BsrBI CCGCTC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 777
BsrI ACTGG 4 cut(s) 64, 77, 400, 659
BssECI CCNNGG 2 cut(s) 648, 745
BssMI GATC 2 cut(s) 200, 334
Bst2UI CCWGG 1 cut(s) 649
Bst4CI ACNGT 2 cut(s) 383, 513
Bst6I CTCTTC 1 cut(s) 252
BstAPI GCANNNNNTGC 1 cut(s) 213
BstC8I GCNNGC 2 cut(s) 564, 742
BstDEI CTNAG 2 cut(s) 229, 790
BstDSI CCRYGG 1 cut(s) 745
BstF5I GGATG 3 cut(s) 59, 73, 240
BstFNI CGCG 3 cut(s) 282, 354, 747
BstHHI GCGC 3 cut(s) 284, 356, 784
BstKTI GATC 2 cut(s) 203, 337
BstMBI GATC 2 cut(s) 200, 334
BstMWI GCNNNNNNNGC 5 cut(s) 213, 222, 602, 722, 750
BstNI CCWGG 1 cut(s) 649
BstSCI CCNGG 1 cut(s) 647
BstUI CGCG 3 cut(s) 282, 354, 747
BstV1I GCAGC 2 cut(s) 262, 728
BstV2I GAAGAC 1 cut(s) 274
BsuRI GGCC 3 cut(s) 332, 687, 744
BtgI CCRYGG 1 cut(s) 745
BtsCI GGATG 3 cut(s) 59, 73, 240
BtsIMutI CAGTG 2 cut(s) 509, 634
Cac8I GCNNGC 2 cut(s) 564, 742
CfoI GCGC 3 cut(s) 284, 356, 784
Cfr13I GGNCC 2 cut(s) 16, 685
Cfr42I CCGCGG 1 cut(s) 748
CseI GACGC 1 cut(s) 288
Csp6I GTAC 1 cut(s) 397
CviAII CATG 2 cut(s) 23, 425
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 2 cut(s) 229, 790
DpnI GATC 2 cut(s) 202, 336
DpnII GATC 2 cut(s) 200, 334
EaeI YGGCCR 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 16
EcoRI GAATTC 1 cut(s) 834
EcoRII CCWGG 1 cut(s) 647
FaeI CATG 2 cut(s) 26, 428
FaqI GGGAC 4 cut(s) 52, 65, 96, 665
FatI CATG 2 cut(s) 22, 424
Fnu4HI GCNGC 4 cut(s) 226, 251, 717, 745
FokI GGATG 3 cut(s) 46, 60, 227
Fsp4HI GCNGC 4 cut(s) 226, 251, 717, 745
FspBI CTAG 2 cut(s) 482, 815
FspI TGCGCA 1 cut(s) 783
GlaI GCGC 3 cut(s) 283, 355, 783
GluI GCNGC 4 cut(s) 226, 251, 717, 745
GsuI CTGGAG 1 cut(s) 676
HaeIII GGCC 3 cut(s) 332, 687, 744
HgaI GACGC 1 cut(s) 288
HhaI GCGC 3 cut(s) 284, 356, 784
Hin1II CATG 2 cut(s) 26, 428
Hin6I GCGC 3 cut(s) 282, 354, 782
HinP1I GCGC 3 cut(s) 282, 354, 782
HindIII AAGCTT 1 cut(s) 723
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 2 cut(s) 19, 621
Hpy188I TCNGA 5 cut(s) 200, 232, 320, 476, 844
Hpy188III TCNNGA 1 cut(s) 298
Hpy8I GTNNAC 2 cut(s) 19, 621
HpyAV CCTTC 4 cut(s) 139, 491, 849, 854
HpyCH4III ACNGT 2 cut(s) 383, 513
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 2 cut(s) 216, 581
HpyF10VI GCNNNNNNNGC 5 cut(s) 213, 222, 602, 722, 750
HpyF3I CTNAG 2 cut(s) 229, 790
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 2 cut(s) 26, 428
HspAI GCGC 3 cut(s) 282, 354, 782
KpnI GGTACC 1 cut(s) 400
KspI CCGCGG 1 cut(s) 748
Kzo9I GATC 2 cut(s) 200, 334
LmnI GCTCC 3 cut(s) 542, 593, 758
Lsp1109I GCAGC 2 cut(s) 262, 728
LweI GCATC 1 cut(s) 793
MaeI CTAG 2 cut(s) 482, 815
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 383
MalI GATC 2 cut(s) 202, 336
MbiI CCGCTC 1 cut(s) 225
MboI GATC 2 cut(s) 200, 334
MboII GAAGA 7 cut(s) 269, 276, 279, 451, 500, 503, 673
MhlI GDGCHC 1 cut(s) 799
MluCI AATT 4 cut(s) 233, 430, 689, 834
MmeI TCCRAC 1 cut(s) 520
MroXI GAANNNNTTC 1 cut(s) 838
MseI TTAA 2 cut(s) 312, 360
MspA1I CMGCKG 1 cut(s) 747
MspR9I CCNGG 1 cut(s) 649
MvaI CCWGG 1 cut(s) 649
MvnI CGCG 3 cut(s) 282, 354, 747
MwoI GCNNNNNNNGC 5 cut(s) 213, 222, 602, 722, 750
NdeII GATC 2 cut(s) 200, 334
NlaIII CATG 2 cut(s) 26, 428
NlaIV GGNNCC 3 cut(s) 398, 437, 754
NsbI TGCGCA 1 cut(s) 783
PdmI GAANNNNTTC 1 cut(s) 838
PkrI GCNGC 4 cut(s) 227, 252, 718, 746
PshBI ATTAAT 1 cut(s) 312
Psp1406I AACGTT 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 647
PspGI CCWGG 1 cut(s) 647
PspN4I GGNNCC 3 cut(s) 398, 437, 754
PspPI GGNCC 2 cut(s) 16, 685
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SacII CCGCGG 1 cut(s) 748
SaqAI TTAA 2 cut(s) 312, 360
SatI GCNGC 4 cut(s) 226, 251, 717, 745
Sau3AI GATC 2 cut(s) 200, 334
Sau96I GGNCC 2 cut(s) 16, 685
ScrFI CCNGG 1 cut(s) 649
SduI GDGCHC 1 cut(s) 799
SfaNI GCATC 1 cut(s) 793
Sfr303I CCGCGG 1 cut(s) 748
SgrBI CCGCGG 1 cut(s) 748
SinI GGWCC 1 cut(s) 16
Sse9I AATT 4 cut(s) 233, 430, 689, 834
SsiI CCGC 5 cut(s) 187, 192, 225, 745, 747
SspI AATATT 1 cut(s) 294
SspMI CTAG 2 cut(s) 482, 815
StyD4I CCNGG 1 cut(s) 647
TaaI ACNGT 2 cut(s) 383, 513
TaiI ACGT 1 cut(s) 419
TaqI TCGA 3 cut(s) 221, 446, 728
TasI AATT 4 cut(s) 233, 430, 689, 834
TauI GCSGC 2 cut(s) 228, 747
Tru1I TTAA 2 cut(s) 312, 360
Tru9I TTAA 2 cut(s) 312, 360
TscAI CASTG 2 cut(s) 516, 634
TseI GCWGC 2 cut(s) 250, 716
TspDTI ATGAA 2 cut(s) 510, 779
TspRI CASTG 2 cut(s) 516, 634
VpaK11BI GGWCC 1 cut(s) 16
VspI ATTAAT 1 cut(s) 312
XapI RAATTY 2 cut(s) 233, 834
XmnI GAANNNNTTC 1 cut(s) 838
XspI CTAG 2 cut(s) 482, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.