Rroxscaffold_7G00162380

Rhomboid family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012141
Physical Location & Seq
Forward (+)
4911933 .. 4913596
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162380.1

Sequence Viewer

Length: 858 bp
ATGGGTCAGTTTCAGGTCCACCATGTTCAAACCCTCACTAAACCTCACTACTCTTACTCATCCCACCATCCAGTCCCAATCACTTGCTTCCCTCATCGTCCCAACCTCACTCTCACCTTCCCTCATTCCCTCTCTACTTCCCAAAACCACCCCAAACCCATCCACCTCCCTCTCCTCACCGCCGTCCGATCTCGCATAGTCTGCAAATCCAGCGGCTCAGCGCAGCCAGAAGAGAGAAGAAGACCTCACAGACGCGCCAATGGAATATTCTGGATTTTACTTATTAATATTGGAATATACTTGGCCGATCATATTTTTCAGGTTCCCGCGGTTAAAATGCTATACTTGTATCACAGTTACCCTGAATGGTACCAGTTTCTAACAGCAACGTTCTGTCATGCTAATTGGAACCATCTTTCGAGCAACCTTTTCTTCTTGTATATTTTCGGAAAGCTAGTTGAAGAAGATGAAGGAAATCTCGCACTGTGGCTCTCTTATATTCTTACAGGTGTTGGAGCTAACTTTGTTTCGTGGCTTGCTCTACCGACAAATGCAGTTTCTATTGGAGCTTCTGGTGCTGTTTTTGGATTGTTTACTATCAGTGTTCTTGTAAAGATGTCCTGGGACTGGAGGAAGATCCTTGAAGTTCTTATATTGGGCCAATTTGTTATAGACAAGGTTATGGAAGCAGCCCAAGCTTCTACAGGATTAGCAGGCCATGGAGGCTCCTCCTTGATGAATGTCAATCACATTGCGCATCTCTCAGGTGCTCTTGTTGGTGTATTTCTAGTATGGCTTCTTGGTAGAGTTCCTTCTGAACCTCCAGAACAAGAAGGATTGGATTTGAAAAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0019904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid

Protein Analysis

285

Amino Acids

31.94

Weight (kDa)

9.12

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 122 - 269 9e-27 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25640
fragaria_vesca FvH4_2g36120 FvH4_2g36120 FvH4_2g36120 FvH4_2g36120
malus_domestica MD15G1097700.v1.1
prunus_persica Prupe.1G452600_v2.0.a1
pyrus_communis pycom08g09880 pycom15g08960
rosa_chinensis RchiOBHm_Chr6g0305751
rosa_laevigata RLG00000010862
rosa_multiflora Rmu_sc0042960.1_g000002
rosa_roxburghii Rroxscaffold_7G00162380
rosa_rugosa Rorug06G0343900.1
rosa_samantha Rh6AG455300 Rh6BG446000 Rh6CG469200 Rh6DG455800
rosa_wichuraiana Rw6G039720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 756
Acc65I GGTACC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 369
AccII CGCG 2 cut(s) 255, 329
AciI CCGC 4 cut(s) 180, 213, 327, 329
AclI AACGTT 1 cut(s) 389
AclWI GGATC 1 cut(s) 631
AcoI YGGCCR 1 cut(s) 303
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 1 cut(s) 627
AgsI TTSAA 4 cut(s) 29, 461, 644, 847
AjnI CCWGG 1 cut(s) 620
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AluBI AGCT 4 cut(s) 454, 518, 569, 698
AluI AGCT 4 cut(s) 454, 518, 569, 698
Alw21I GWGCWC 1 cut(s) 772
AlwI GGATC 1 cut(s) 631
AoxI GGCC 3 cut(s) 303, 658, 715
ApeKI GCWGC 2 cut(s) 223, 689
AseI ATTAAT 1 cut(s) 285
Asp718I GGTACC 1 cut(s) 369
AspLEI GCGC 3 cut(s) 223, 257, 757
AspS9I GGNCC 2 cut(s) 16, 658
AsuHPI GGTGA 2 cut(s) 106, 169
AvaII GGWCC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 369
BarI GAAGNNNNNNTAC 2 cut(s) 796, 828
BbsI GAAGAC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 772
BbvI GCAGC 2 cut(s) 235, 701
BccI CCATC 3 cut(s) 75, 167, 420
BceAI ACGGC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 622
BfaI CTAG 2 cut(s) 455, 788
BfmI CTRYAG 1 cut(s) 702
BglI GCCNNNNNGGC 1 cut(s) 723
BisI GCNGC 3 cut(s) 214, 224, 690
BlpI GCTNAGC 1 cut(s) 217
BlsI GCNGC 3 cut(s) 215, 225, 691
Bme1390I CCNGG 1 cut(s) 622
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 2 cut(s) 16, 658
BmiI GGNNCC 4 cut(s) 324, 371, 410, 727
BmrFI CCNGG 1 cut(s) 622
BmsI GCATC 1 cut(s) 766
BpiI GAAGAC 1 cut(s) 247
BpmI CTGGAG 2 cut(s) 649, 807
Bpu1102I GCTNAGC 1 cut(s) 217
BsaJI CCNNGG 3 cut(s) 327, 621, 718
Bsc4I CCNNNNNNNGG 1 cut(s) 627
Bse1I ACTGG 3 cut(s) 71, 373, 632
Bse3DI GCAATG 1 cut(s) 750
BseBI CCWGG 1 cut(s) 622
BseDI CCNNGG 3 cut(s) 327, 621, 718
BseGI GGATG 3 cut(s) 59, 67, 159
BseLI CCNNNNNNNGG 1 cut(s) 627
BseMI GCAATG 1 cut(s) 750
BseMII CTCAG 2 cut(s) 231, 777
BseNI ACTGG 3 cut(s) 71, 373, 632
BseRI GAGGAG 2 cut(s) 164, 718
BseXI GCAGC 2 cut(s) 235, 701
Bsh1236I CGCG 2 cut(s) 255, 329
BshFI GGCC 3 cut(s) 305, 660, 717
BshNI GGYRCC 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 772
BslFI GGGAC 3 cut(s) 59, 84, 638
BslI CCNNNNNNNGG 1 cut(s) 627
BsmFI GGGAC 3 cut(s) 59, 84, 638
BsnI GGCC 3 cut(s) 305, 660, 717
Bsp1286I GDGCHC 1 cut(s) 772
Bsp143I GATC 3 cut(s) 188, 307, 636
Bsp1720I GCTNAGC 1 cut(s) 217
Bsp19I CCATGG 1 cut(s) 718
BspACI CCGC 4 cut(s) 180, 213, 327, 329
BspANI GGCC 3 cut(s) 305, 660, 717
BspCNI CTCAG 2 cut(s) 230, 776
BspFNI CGCG 2 cut(s) 255, 329
BspLI GGNNCC 4 cut(s) 324, 371, 410, 727
BspPI GGATC 1 cut(s) 631
BspT107I GGYRCC 1 cut(s) 369
BsrDI GCAATG 1 cut(s) 750
BsrI ACTGG 3 cut(s) 71, 373, 632
BssECI CCNNGG 3 cut(s) 327, 621, 718
BssMI GATC 3 cut(s) 188, 307, 636
BssT1I CCWWGG 1 cut(s) 718
Bst2UI CCWGG 1 cut(s) 622
Bst4CI ACNGT 2 cut(s) 356, 486
Bst6I CTCTTC 1 cut(s) 225
BstAPI GCANNNNNTGC 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 537, 715
BstDEI CTNAG 2 cut(s) 217, 763
BstDSI CCRYGG 2 cut(s) 327, 718
BstF5I GGATG 3 cut(s) 59, 67, 159
BstFNI CGCG 2 cut(s) 255, 329
BstHHI GCGC 3 cut(s) 223, 257, 757
BstKTI GATC 3 cut(s) 191, 310, 639
BstMBI GATC 3 cut(s) 188, 307, 636
BstMWI GCNNNNNNNGC 5 cut(s) 201, 210, 575, 695, 723
BstNI CCWGG 1 cut(s) 622
BstSCI CCNGG 1 cut(s) 620
BstSFI CTRYAG 1 cut(s) 702
BstUI CGCG 2 cut(s) 255, 329
BstV1I GCAGC 2 cut(s) 235, 701
BstV2I GAAGAC 1 cut(s) 247
BstX2I RGATCY 1 cut(s) 636
BstYI RGATCY 1 cut(s) 636
BsuRI GGCC 3 cut(s) 305, 660, 717
BtgI CCRYGG 2 cut(s) 327, 718
BtsCI GGATG 3 cut(s) 59, 67, 159
BtsIMutI CAGTG 2 cut(s) 482, 607
Cac8I GCNNGC 2 cut(s) 537, 715
CfoI GCGC 3 cut(s) 223, 257, 757
Cfr13I GGNCC 2 cut(s) 16, 658
Cfr42I CCGCGG 1 cut(s) 330
CseI GACGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 370
CviAII CATG 3 cut(s) 23, 398, 719
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 2 cut(s) 217, 763
DpnI GATC 3 cut(s) 190, 309, 638
DpnII GATC 3 cut(s) 188, 307, 636
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 718
Eco47I GGWCC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 620
EcoT14I CCWWGG 1 cut(s) 718
ErhI CCWWGG 1 cut(s) 718
FaeI CATG 3 cut(s) 26, 401, 722
FaqI GGGAC 3 cut(s) 59, 84, 638
FatI CATG 3 cut(s) 22, 397, 718
FauI CCCGC 1 cut(s) 334
Fnu4HI GCNGC 3 cut(s) 214, 224, 690
FokI GGATG 3 cut(s) 46, 54, 146
Fsp4HI GCNGC 3 cut(s) 214, 224, 690
FspBI CTAG 2 cut(s) 455, 788
FspI TGCGCA 1 cut(s) 756
GlaI GCGC 3 cut(s) 222, 256, 756
GluI GCNGC 3 cut(s) 214, 224, 690
GsuI CTGGAG 2 cut(s) 649, 807
HaeIII GGCC 3 cut(s) 305, 660, 717
HgaI GACGC 1 cut(s) 261
HhaI GCGC 3 cut(s) 223, 257, 757
Hin1II CATG 3 cut(s) 26, 401, 722
Hin6I GCGC 3 cut(s) 221, 255, 755
HinP1I GCGC 3 cut(s) 221, 255, 755
HindIII AAGCTT 1 cut(s) 696
HphI GGTGA 2 cut(s) 106, 169
Hpy166II GTNNAC 2 cut(s) 19, 594
Hpy188I TCNGA 3 cut(s) 188, 449, 817
Hpy188III TCNNGA 2 cut(s) 271, 824
Hpy8I GTNNAC 2 cut(s) 19, 594
HpyAV CCTTC 4 cut(s) 127, 464, 822, 827
HpyCH4III ACNGT 2 cut(s) 356, 486
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 2 cut(s) 204, 554
HpyF10VI GCNNNNNNNGC 5 cut(s) 201, 210, 575, 695, 723
HpyF3I CTNAG 2 cut(s) 217, 763
HpySE526I ACGT 1 cut(s) 389
Hsp92II CATG 3 cut(s) 26, 401, 722
HspAI GCGC 3 cut(s) 221, 255, 755
KpnI GGTACC 1 cut(s) 373
KspI CCGCGG 1 cut(s) 330
Kzo9I GATC 3 cut(s) 188, 307, 636
LmnI GCTCC 3 cut(s) 515, 566, 731
Lsp1109I GCAGC 2 cut(s) 235, 701
LweI GCATC 1 cut(s) 766
MaeI CTAG 2 cut(s) 455, 788
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 1 cut(s) 356
MalI GATC 3 cut(s) 190, 309, 638
MboI GATC 3 cut(s) 188, 307, 636
MboII GAAGA 7 cut(s) 242, 249, 252, 424, 473, 476, 646
MflI RGATCY 1 cut(s) 636
MhlI GDGCHC 1 cut(s) 772
MluCI AATT 2 cut(s) 403, 662
MmeI TCCRAC 1 cut(s) 493
MseI TTAA 2 cut(s) 285, 333
MspA1I CMGCKG 2 cut(s) 213, 329
MspR9I CCNGG 1 cut(s) 622
MvaI CCWGG 1 cut(s) 622
MvnI CGCG 2 cut(s) 255, 329
MwoI GCNNNNNNNGC 5 cut(s) 201, 210, 575, 695, 723
NcoI CCATGG 1 cut(s) 718
NdeII GATC 3 cut(s) 188, 307, 636
NlaIII CATG 3 cut(s) 26, 401, 722
NlaIV GGNNCC 4 cut(s) 324, 371, 410, 727
NsbI TGCGCA 1 cut(s) 756
PkrI GCNGC 3 cut(s) 215, 225, 691
PshBI ATTAAT 1 cut(s) 285
Psp1406I AACGTT 1 cut(s) 389
Psp6I CCWGG 1 cut(s) 620
PspGI CCWGG 1 cut(s) 620
PspN4I GGNNCC 4 cut(s) 324, 371, 410, 727
PspPI GGNCC 2 cut(s) 16, 658
PsuI RGATCY 1 cut(s) 636
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SacII CCGCGG 1 cut(s) 330
SaqAI TTAA 2 cut(s) 285, 333
SatI GCNGC 3 cut(s) 214, 224, 690
Sau3AI GATC 3 cut(s) 188, 307, 636
Sau96I GGNCC 2 cut(s) 16, 658
ScrFI CCNGG 1 cut(s) 622
SduI GDGCHC 1 cut(s) 772
SfaNI GCATC 1 cut(s) 766
SfcI CTRYAG 1 cut(s) 702
Sfr303I CCGCGG 1 cut(s) 330
SgrBI CCGCGG 1 cut(s) 330
SinI GGWCC 1 cut(s) 16
Sse9I AATT 2 cut(s) 403, 662
SsiI CCGC 4 cut(s) 180, 213, 327, 329
SspI AATATT 2 cut(s) 267, 289
SspMI CTAG 2 cut(s) 455, 788
StyD4I CCNGG 1 cut(s) 620
StyI CCWWGG 1 cut(s) 718
TaaI ACNGT 2 cut(s) 356, 486
TaiI ACGT 1 cut(s) 392
TaqI TCGA 1 cut(s) 419
TasI AATT 2 cut(s) 403, 662
TauI GCSGC 1 cut(s) 216
Tru1I TTAA 2 cut(s) 285, 333
Tru9I TTAA 2 cut(s) 285, 333
TscAI CASTG 2 cut(s) 489, 607
TseI GCWGC 2 cut(s) 223, 689
TspDTI ATGAA 2 cut(s) 483, 752
TspRI CASTG 2 cut(s) 489, 607
VpaK11BI GGWCC 1 cut(s) 16
VspI ATTAAT 1 cut(s) 285
XspI CTAG 2 cut(s) 455, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.