Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006249

Physical Location & Seq

Genomic Coordinates Forward (+)

38258507 .. 38267106

Gene Structure 8600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G456000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2979 bp

ATGAGGATTGACGAAGAGAGCGAAGGAGTTTCGGCGTCCAGGAACCACCTGGTGTTTGCTTACTATGTCACCGGCCATGGCTTCGGCCACGCCACTCGCGTCGTTGAGGTTGTGCGGCACCTGATTCTGGCCGGCCACGATGTGCACGTCGTAACCGGAGCGCCGGACTTCGTTTTCACGTCGGAGATAGAGTCGCCTCGGCTCTTCATTCGCAAGGTTCTTCTAGACTGTGGAGCTGTTCAGGCAGATGCTTTAACAGTCGATCGTCTTGCATCCTTAGCAAAGTATTCGGAGACGGCTGTGGTGCCAAGGGCTTCTATTTTGAAAACAGAAGTTGAATGGCTAACCTCCATCAAGGCTGACCTAGTGGTCTCAGATGTTGTTCCTGTTGCGTGTCGTGCAGCAGCAGATGCTGGAATTCGCTCTGTTTGTGTCACTAACTTCAGTTGGGACTTCATCTATGCAGAATATGTGATGGCTGCTGGAAGTAATCATCGTTCAATCGTTTGGCAGATAGCGGAAGATTATTCCCACTGTGAGTTCCTCATCCGCCTCCCGGGATACTGCCCAATGCCTGCTTTCCGTGATGTGGTTGATGTACCTCTAGTTGTGAGGAGGATTCGCAGATCCCGCAAAGAGGTGAGGCAGGAACTCGGAATTGAAGATGACGTAAAACTAGTCATCCTCAACTTTGGTGGACAGCCAGCAGGCTGGAAATTGAAAGTGGAGTTTTTACCCCCTGGATGGCTGTGCCTGGTTTGTGGTGGTTCTGACACCCAGGAGCTTCCACCAAATTTCATAAAGCTTGCAAAAGATGCTTATACACCTGATTTTATGGCAGCATCTGACTGTATGCTCGGAAAAATTGGATATGGCACTGTGAGTGAAGCCCTTGCATACAAGTTACCCTTTGTCTTCGTACGCAGAGATTATTTCAATGAAGAACCTTTCTTGAGAAATATGCTTGAGTATTATCAAGGTGGTGTTGAGATGATTAGGAGGGACTTGCTCACTGGTCATTGGAAACCTTACCTTGAGCGTGCAATCAGTTTGAAACCGTGCTATGAAGGAGGTATCAATGGTGGTGAGGTGGCAGCTCACATCCTGCAGGAGACGGCTATTGGGAAAAACTATGCATCAGATAAGCTAAGCGGGGCAAGAAGATTGCGTGATGCCATAATTCTTGGGTATCAACTACAAAGGGTACCTGGACGGGATATGGCCATTCCTGAATGGTATGCAAATGCTGAAAGTGAACTTGGAATGGGATCACCTACTTGCGAAATGAGCGAGAAGAGCTCCCTAATGAACTCATGCACTGAGGACTTCGAGATTCTTCATGGAGATCTTCAGGGTCTTTCAGATACAATGACATTTTTGAAGAGCTTGGCAGAACTTGATTCTATGTATGACTCTGACAAAAGTGCTGAGAAGCGCCAGATGAGGGAGCGCAAGGCTGCAGCCGGACTCTTCAACTGGGAGGATGAAATCTTTGTGGCAAGGGCACCTGGACGGTTAGACGTAATGGGAGGAATTGCTGACTATTCAGGAAGTCTAGTCTTGCAGATGCCCATAAAGGAAGCCTGCCATGTTGCTGTACAAAGAAATCATCCAAGTAAACATAGGCTCTGGAAACATGCCCTGGTTCGGCAGCAGGCTGAAGGAAAAAACCCAACACCTGTCCTGCAAATTGTCTCATATGGTTCAGAGTTAAGCAACCGTGGCCCAACTTTTGACATGGATCTAGCTGATTTTATGGACGGTGATCAACCAATGTCATACGAGAAGGCAAAGAAATATTTTTCACAAGATCCATCTCAAAAGTGGGCGGCATATGTTGCAGGTGTCATTCTGGTTTTAATGACAGAACTAGGCATACGTTTTGAGGAGAGCATCAGTTTGCTGGTTTCCTCGACAGTCCCGGAAGGCAAAGGTGTCTCTTCTTCTGCTTCTGTGGAGGTTGCTACCATGTCTGCCATAGCTGCTTCCCATGGATTAAGCATCAGCCCCAGAGATCTTGCTTTGCTTTGCCAAAAGGTGGAGAATCATATTGTTGGAGCTCCGTGTGGTGTGATGGACCAGATGACTTCTGCATGTGGTGAAGCCAATAAGCTTCTTGCAATGTTGTGCCAGCCTGCTGAGGTTCTTGGCCTTGTAGAAATTCCTGGTCATATCCGATTTTGGGGAATTGATTCAGGAATACGACACAGTGTTGGAGGTGCGGATTATGGATCTGTTAGAATAGGTGCCTTCATGGGTCGAAAGATGATAAAATGTGCAGCATCTGCTATTTTGTCTCGATCATCAGGAGCTGAAAATGGACCAAACCCTGATGAGTTAGAGGATAATGGTTTTGAACTACTTGAAACTGAAGCTTCATTAGATTACTTGTGCAACCTGTCACCTCATAGATACGAGGCTCTTTATGTTAAGATGCTCCCTGAGTCTATACTTGGTGAAACTTTTCTTGTGAAGTATGATGGTCACAATGATCCAGTTACAGTAATTGATCCAAACCGTAACTATGGAGTGACAGCACCTGCTAAACATCCTATATATGAAAATTTCCGAGTTAAGGCATTCAAAGCACTGTTAACATCTGCAAATTCAGATGATCAGCTTACAGCTCTCGGAGAGTTATTGTACCAGTGCCACTACAGCTACAGTGCCTGTGGACTTGGCTCCGACGGAACAAACCGCCTTGTACGGTTGGTACAAGAGATGCAACACAGTAAAGCATCTAAATCTGGCGACGGGACACTATATGGAGCCAAGATTACAGGAGGAGGTTCTGGTGGAACAGTTTGTGCAGTTGGTAGGAATTCTCTACAGAGCAGCCAACAAATTTTGGAGATTCAGCAGAGATACAAGGATGCAACAGGGTACTTGCCATATATTTTTGAGGGCTCATCACCTGGTGCAGGCAAGTTTGGATATCTAAGAATACGACGCCGTCCCTGTGTCAATCCAAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009506 GO:0009702 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N GalKase_gal_bdg Glyco_trans_1_3

Protein Analysis

993

Amino Acids

109.01

Weight (kDa)

5.76

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42850 AT3G42850 AT4G16130
fragaria_vesca	FvH4_2g36460 FvH4_2g36460 FvH4_2g36460
malus_domestica	MD08G1124400.v1.1 MD15G1103100.v1.1
prunus_persica	Prupe.1G456000_v2.0.a1 Prupe.1G456000_v2.0.a1 Prupe.1G456000_v2.0.a1 Prupe.1G456000_v2.0.a1 Prupe.1G456000_v2.0.a1 Prupe.1G456000_v2.0.a1 Prupe.1G456000_v2.0.a1
pyrus_communis	pycom08g10310 pycom15g09400
rosa_chinensis	RchiOBHm_Chr6g0305421
rosa_laevigata	RLG00000010892
rosa_multiflora	Rmu_sc0002782.1_g000020
rosa_roxburghii	Rroxscaffold_7G00162820
rosa_rugosa	Rorug06G0340200
rosa_samantha	Rh6AG452200 Rh6BG449500 Rh6CG466000 Rh6DG452700
rosa_wichuraiana	Rw6G039400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1832, 2548
AasI	GACNNNNNNGTC	1 cut(s)	368
Acc36I	ACCTGC	2 cut(s)	1832, 2548
Acc65I	GGTACC	1 cut(s)	1204
AccB1I	GGYRCC	5 cut(s)	117, 304, 1204, 1504, 2246
AccB7I	CCANNNNNTGG	1 cut(s)	2038
AccII	CGCG	1 cut(s)	99
AciI	CCGC	8 cut(s)	115, 518, 550, 631, 1152, 1829, 2222, 2698
AclWI	GGATC	7 cut(s)	621, 1276, 1749, 1805, 2239, 2486, 2504
AcoI	YGGCCR	5 cut(s)	73, 85, 129, 133, 1221
AcsI	RAATTY	7 cut(s)	417, 793, 2160, 2563, 2605, 2821, 2844
AcuI	CTGAAG	4 cut(s)	427, 1334, 1680, 2391
AcyI	GRCGYC	2 cut(s)	35, 2950
AdeI	CACNNNGTG	3 cut(s)	52, 142, 2918
AfaI	GTAC	8 cut(s)	600, 921, 1206, 1599, 2645, 2706, 2715, 2885
AhlI	ACTAGT	1 cut(s)	676
AjiI	CACGTC	2 cut(s)	148, 180
AjuI	GAANNNNNNNTTGG	2 cut(s)	1242, 1274
Alw21I	GWGCWC	3 cut(s)	147, 1301, 2062
Alw26I	GTCTC	6 cut(s)	287, 376, 1106, 1699, 1942, 2301
Alw44I	GTGCAC	1 cut(s)	143
AlwI	GGATC	7 cut(s)	621, 1276, 1749, 1805, 2239, 2486, 2504
AlwNI	CAGNNNCTG	6 cut(s)	413, 845, 2285, 2312, 2540, 2670
Ama87I	CYCGRG	1 cut(s)	556
AoxI	GGCC	7 cut(s)	73, 85, 129, 133, 1221, 1723, 2149
ApaLI	GTGCAC	1 cut(s)	143
ApoI	RAATTY	7 cut(s)	417, 793, 2160, 2563, 2605, 2821, 2844
Asp700I	GAANNNNTTC	2 cut(s)	2191, 2463
Asp718I	GGTACC	1 cut(s)	1204
AspLEI	GCGC	3 cut(s)	163, 1437, 1452
AspS9I	GGNCC	3 cut(s)	1724, 2077, 2321
AsuC2I	CCSGG	3 cut(s)	557, 558, 1922
AsuHPI	GGTGA	9 cut(s)	61, 652, 1097, 1263, 1775, 2111, 2394, 2468, 2904
AvaI	CYCGRG	1 cut(s)	556
AvaII	GGWCC	2 cut(s)	2077, 2321
BaeGI	GKGCMC	2 cut(s)	147, 1507
BalI	TGGCCA	1 cut(s)	1223
BanI	GGYRCC	5 cut(s)	117, 304, 1204, 1504, 2246
BanII	GRGCYC	3 cut(s)	1301, 2062, 2909
BbsI	GAAGAC	1 cut(s)	907
Bbv12I	GWGCWC	3 cut(s)	147, 1301, 2062
BbvCI	CCTCAGC	1 cut(s)	2139
BccI	CCATC	6 cut(s)	359, 469, 738, 1822, 2068, 2474
BceAI	ACGGC	3 cut(s)	312, 1131, 2937
BcgI	CGANNNNNNTGC	4 cut(s)	251, 270, 285, 304
BciVI	GTATCC	1 cut(s)	554
BclI	TGATCA	2 cut(s)	1765, 2614
BcnI	CCSGG	3 cut(s)	557, 558, 1922
BcoDI	GTCTC	6 cut(s)	287, 376, 1106, 1699, 1942, 2301
BcuI	ACTAGT	1 cut(s)	676
BfaI	CTAG	7 cut(s)	224, 365, 605, 677, 1556, 1745, 1871
BfmI	CTRYAG	5 cut(s)	1106, 1458, 2656, 2662, 2828
BfoI	RGCGCY	2 cut(s)	164, 1438
BfuAI	ACCTGC	2 cut(s)	1832, 2548
BfuI	GTATCC	1 cut(s)	554
BglII	AGATCT	2 cut(s)	1345, 2014
BlpI	GCTNAGC	1 cut(s)	1148
Bme18I	GGWCC	2 cut(s)	2077, 2321
BmeT110I	CYCGRG	1 cut(s)	556
BmgBI	CACGTC	2 cut(s)	148, 180
BmgT120I	GGNCC	3 cut(s)	1724, 2077, 2321
BmiI	GGNNCC	8 cut(s)	44, 119, 306, 1206, 1506, 2248, 2683, 2770
BmrI	ACTGGG	1 cut(s)	1486
BmuI	ACTGGG	1 cut(s)	1486
BpiI	GAAGAC	1 cut(s)	907
BplI	GAGNNNNNCTC	2 cut(s)	1283, 1315
Bpu10I	CCTNAGC	2 cut(s)	277, 2139
Bpu1102I	GCTNAGC	1 cut(s)	1148
BpuEI	CTTGAG	3 cut(s)	973, 986, 1055
BpuMI	CCSGG	3 cut(s)	557, 558, 1922
BsaHI	GRCGYC	2 cut(s)	35, 2950
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	9 cut(s)	76, 197, 308, 556, 739, 777, 1641, 1720, 1990
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bse118I	RCCGGY	2 cut(s)	71, 131
Bse1I	ACTGG	4 cut(s)	1018, 1481, 2495, 2647
Bse3DI	GCAATG	1 cut(s)	2127
BseDI	CCNNGG	9 cut(s)	76, 197, 308, 556, 739, 777, 1641, 1720, 1990
BseGI	GGATG	9 cut(s)	272, 546, 681, 749, 1101, 1489, 1609, 2548, 2878
BseMI	GCAATG	1 cut(s)	2127
BseMII	CTCAG	5 cut(s)	387, 1311, 1419, 2130, 2433
BseNI	ACTGG	4 cut(s)	1018, 1481, 2495, 2647
BseRI	GAGGAG	3 cut(s)	628, 1901, 2799
BseSI	GKGCMC	2 cut(s)	147, 1507
BsgI	GTGCAG	4 cut(s)	420, 2298, 2829, 2940
Bsh1236I	CGCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	265
BshFI	GGCC	7 cut(s)	75, 87, 131, 135, 1223, 1725, 2151
BshNI	GGYRCC	5 cut(s)	117, 304, 1204, 1504, 2246
BsiEI	CGRYCG	1 cut(s)	265
BsiHKAI	GWGCWC	3 cut(s)	147, 1301, 2062
BsiHKCI	CYCGRG	1 cut(s)	556
BsiSI	CCGG	7 cut(s)	72, 132, 156, 164, 557, 1464, 1922
BsiWI	CGTACG	1 cut(s)	919
BslFI	GGGAC	5 cut(s)	464, 1016, 1904, 2770, 2940
BsmAI	GTCTC	6 cut(s)	287, 376, 1106, 1699, 1942, 2301
BsmBI	CGTCTC	2 cut(s)	287, 1106
BsmFI	GGGAC	5 cut(s)	464, 1016, 1904, 2770, 2940
BsmI	GAATGC	1 cut(s)	2579
BsnI	GGCC	7 cut(s)	75, 87, 131, 135, 1223, 1725, 2151
Bso31I	GGTCTC	1 cut(s)	376
BsoBI	CYCGRG	1 cut(s)	556
Bsp1286I	GDGCHC	5 cut(s)	147, 1301, 1507, 2062, 2909
Bsp1407I	TGTACA	1 cut(s)	1597
Bsp1720I	GCTNAGC	1 cut(s)	1148
Bsp19I	CCATGG	2 cut(s)	76, 1990
BspACI	CCGC	8 cut(s)	115, 518, 550, 631, 1152, 1829, 2222, 2698
BspANI	GGCC	7 cut(s)	75, 87, 131, 135, 1223, 1725, 2151
BspCNI	CTCAG	5 cut(s)	386, 1312, 1420, 2131, 2434
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	8 cut(s)	44, 119, 306, 1206, 1506, 2248, 2683, 2770
BspMAI	CTGCAG	2 cut(s)	1110, 1462
BspMI	ACCTGC	2 cut(s)	1832, 2548
BspPI	GGATC	7 cut(s)	621, 1276, 1749, 1805, 2239, 2486, 2504
BspQI	GCTCTTC	3 cut(s)	209, 1289, 1376
BspT107I	GGYRCC	5 cut(s)	117, 304, 1204, 1504, 2246
BspTNI	GGTCTC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	2127
BsrFI	RCCGGY	2 cut(s)	71, 131
BsrGI	TGTACA	1 cut(s)	1597
BsrI	ACTGG	4 cut(s)	1018, 1481, 2495, 2647
BssAI	RCCGGY	2 cut(s)	71, 131
BssECI	CCNNGG	9 cut(s)	76, 197, 308, 556, 739, 777, 1641, 1720, 1990
BssNI	GRCGYC	2 cut(s)	35, 2950
BssT1I	CCWWGG	3 cut(s)	76, 308, 1990
Bst6I	CTCTTC	6 cut(s)	9, 209, 1289, 1376, 1475, 1945
BstACI	GRCGYC	2 cut(s)	35, 2950
BstAPI	GCANNNNNTGC	4 cut(s)	410, 815, 1838, 2285
BstAUI	TGTACA	1 cut(s)	1597
BstDEI	CTNAG	8 cut(s)	277, 373, 1148, 1320, 1428, 2139, 2442, 2939
BstDSI	CCRYGG	3 cut(s)	76, 1720, 1990
BstENI	CCTNNNNNAGG	1 cut(s)	2919
BstF5I	GGATG	9 cut(s)	272, 546, 681, 749, 1101, 1489, 1609, 2548, 2878
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	2 cut(s)	164, 1438
BstHHI	GCGC	3 cut(s)	163, 1437, 1452
BstMAI	GTCTC	6 cut(s)	287, 376, 1106, 1699, 1942, 2301
BstMCI	CGRYCG	1 cut(s)	265
BstNSI	RCATGY	2 cut(s)	1640, 2097
BstSFI	CTRYAG	5 cut(s)	1106, 1458, 2656, 2662, 2828
BstSLI	GKGCMC	2 cut(s)	147, 1507
BstUI	CGCG	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	907
BstX2I	RGATCY	6 cut(s)	626, 1345, 1741, 1810, 2014, 2231
BstXI	CCANNNNNNTGG	1 cut(s)	711
BstYI	RGATCY	6 cut(s)	626, 1345, 1741, 1810, 2014, 2231
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	7 cut(s)	75, 87, 131, 135, 1223, 1725, 2151
BtgI	CCRYGG	3 cut(s)	76, 1720, 1990
BtrI	CACGTC	2 cut(s)	148, 180
BtsCI	GGATG	9 cut(s)	272, 546, 681, 749, 1101, 1489, 1609, 2548, 2878
BtsIMutI	CAGTG	8 cut(s)	532, 876, 1011, 1317, 2215, 2588, 2654, 2671
BveI	ACCTGC	2 cut(s)	1832, 2548
CaiI	CAGNNNCTG	6 cut(s)	413, 845, 2285, 2312, 2540, 2670
CfoI	GCGC	3 cut(s)	163, 1437, 1452
Cfr10I	RCCGGY	2 cut(s)	71, 131
Cfr13I	GGNCC	3 cut(s)	1724, 2077, 2321
Cfr9I	CCCGGG	1 cut(s)	556
CseI	GACGC	3 cut(s)	24, 88, 2958
CsiI	ACCWGGT	2 cut(s)	48, 2914
Csp6I	GTAC	8 cut(s)	599, 920, 1205, 1598, 2644, 2705, 2714, 2884
CspCI	CAANNNNNGTGG	2 cut(s)	676, 711
CviQI	GTAC	8 cut(s)	599, 920, 1205, 1598, 2644, 2705, 2714, 2884
DdeI	CTNAG	8 cut(s)	277, 373, 1148, 1320, 1428, 2139, 2442, 2939
DraIII	CACNNNGTG	3 cut(s)	52, 142, 2918
DrdI	GACNNNNNNGTC	1 cut(s)	368
DseDI	GACNNNNNNGTC	1 cut(s)	368
EaeI	YGGCCR	5 cut(s)	73, 85, 129, 133, 1221
Eam1104I	CTCTTC	6 cut(s)	9, 209, 1289, 1376, 1475, 1945
EarI	CTCTTC	6 cut(s)	9, 209, 1289, 1376, 1475, 1945
EciI	GGCGGA	1 cut(s)	539
Ecl136II	GAGCTC	2 cut(s)	1299, 2060
Eco130I	CCWWGG	3 cut(s)	76, 308, 1990
Eco24I	GRGCYC	3 cut(s)	1301, 2062, 2909
Eco31I	GGTCTC	1 cut(s)	376
Eco32I	GATATC	1 cut(s)	2936
Eco47I	GGWCC	2 cut(s)	2077, 2321
Eco53kI	GAGCTC	2 cut(s)	1299, 2060
Eco57I	CTGAAG	4 cut(s)	427, 1334, 1680, 2391
Eco88I	CYCGRG	1 cut(s)	556
EcoICRI	GAGCTC	2 cut(s)	1299, 2060
EcoNI	CCTNNNNNAGG	1 cut(s)	2919
EcoRI	GAATTC	2 cut(s)	417, 2821
EcoRV	GATATC	1 cut(s)	2936
EcoT14I	CCWWGG	3 cut(s)	76, 308, 1990
EcoT22I	ATGCAT	1 cut(s)	1138
EcoT38I	GRGCYC	3 cut(s)	1301, 2062, 2909
ErhI	CCWWGG	3 cut(s)	76, 308, 1990
Esp3I	CGTCTC	2 cut(s)	287, 1106
FalI	AAGNNNNNCTT	2 cut(s)	893, 925
FaqI	GGGAC	5 cut(s)	464, 1016, 1904, 2770, 2940
FauI	CCCGC	2 cut(s)	638, 1145
FauNDI	CATATG	2 cut(s)	1699, 1834
FbaI	TGATCA	2 cut(s)	1765, 2614
FokI	GGATG	9 cut(s)	259, 533, 668, 756, 1088, 1496, 1596, 2535, 2885
FriOI	GRGCYC	3 cut(s)	1301, 2062, 2909
FseI	GGCCGGCC	1 cut(s)	135
FspBI	CTAG	7 cut(s)	224, 365, 605, 677, 1556, 1745, 1871
GlaI	GCGC	3 cut(s)	162, 1436, 1451
HaeII	RGCGCY	2 cut(s)	164, 1438
HaeIII	GGCC	7 cut(s)	75, 87, 131, 135, 1223, 1725, 2151
HapII	CCGG	7 cut(s)	72, 132, 156, 164, 557, 1464, 1922
HgaI	GACGC	3 cut(s)	24, 88, 2958
HhaI	GCGC	3 cut(s)	163, 1437, 1452
Hin1I	GRCGYC	2 cut(s)	35, 2950
Hin6I	GCGC	3 cut(s)	161, 1435, 1450
HinP1I	GCGC	3 cut(s)	161, 1435, 1450
HincII	GTYRAC	1 cut(s)	2595
HindII	GTYRAC	1 cut(s)	2595
HindIII	AAGCTT	3 cut(s)	803, 2111, 2373
HpaI	GTTAAC	1 cut(s)	2595
HpaII	CCGG	7 cut(s)	72, 132, 156, 164, 557, 1464, 1922
HphI	GGTGA	9 cut(s)	61, 652, 1097, 1263, 1775, 2111, 2394, 2468, 2904
Hpy166II	GTNNAC	6 cut(s)	145, 698, 1256, 1619, 2595, 2675
Hpy188III	TCNNGA	9 cut(s)	224, 952, 1229, 1330, 1548, 1630, 2196, 2298, 2307
Hpy8I	GTNNAC	6 cut(s)	145, 698, 1256, 1619, 2595, 2675
Hpy99I	CGWCG	6 cut(s)	104, 152, 184, 2690, 2756, 2952
HpyAV	CCTTC	6 cut(s)	17, 1061, 1655, 1780, 1919, 2260
HpyCH4IV	ACGT	5 cut(s)	147, 179, 669, 1521, 1879
HpyF3I	CTNAG	8 cut(s)	277, 373, 1148, 1320, 1428, 2139, 2442, 2939
HpySE526I	ACGT	5 cut(s)	147, 179, 669, 1521, 1879
Hsp92I	GRCGYC	2 cut(s)	35, 2950
HspAI	GCGC	3 cut(s)	161, 1435, 1450
KpnI	GGTACC	1 cut(s)	1208
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Ksp22I	TGATCA	2 cut(s)	1765, 2614
KspAI	GTTAAC	1 cut(s)	2595
LguI	GCTCTTC	3 cut(s)	209, 1289, 1376
MabI	ACCWGGT	2 cut(s)	48, 2914
MaeI	CTAG	7 cut(s)	224, 365, 605, 677, 1556, 1745, 1871
MaeII	ACGT	5 cut(s)	147, 179, 669, 1521, 1879
MaeIII	GTNAC	9 cut(s)	67, 151, 433, 903, 2400, 2483, 2497, 2519, 2530
MflI	RGATCY	6 cut(s)	626, 1345, 1741, 1810, 2014, 2231
MhlI	GDGCHC	5 cut(s)	147, 1301, 1507, 2062, 2909
MlsI	TGGCCA	1 cut(s)	1223
MluNI	TGGCCA	1 cut(s)	1223
MlyI	GAGTC	4 cut(s)	200, 1406, 1461, 2453
MmeI	TCCRAC	4 cut(s)	162, 2035, 2194, 2709
Mox20I	TGGCCA	1 cut(s)	1223
Mph1103I	ATGCAT	1 cut(s)	1138
MroNI	GCCGGC	1 cut(s)	131
MroXI	GAANNNNTTC	2 cut(s)	2191, 2463
MscI	TGGCCA	1 cut(s)	1223
MseI	TTAA	7 cut(s)	254, 1712, 1859, 1997, 2430, 2574, 2594
Msp20I	TGGCCA	1 cut(s)	1223
MspI	CCGG	7 cut(s)	72, 132, 156, 164, 557, 1464, 1922
Mva1269I	GAATGC	1 cut(s)	2579
MvnI	CGCG	1 cut(s)	99
NaeI	GCCGGC	1 cut(s)	133
NciI	CCSGG	3 cut(s)	557, 558, 1922
NcoI	CCATGG	2 cut(s)	76, 1990
NdeI	CATATG	2 cut(s)	1699, 1834
NgoMIV	GCCGGC	1 cut(s)	131
NlaIV	GGNNCC	8 cut(s)	44, 119, 306, 1206, 1506, 2248, 2683, 2770
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	5 cut(s)	67, 433, 2400, 2483, 2530
NsiI	ATGCAT	1 cut(s)	1138
NspI	RCATGY	2 cut(s)	1640, 2097
PaqCI	CACCTGC	2 cut(s)	1832, 2548
PciSI	GCTCTTC	3 cut(s)	209, 1289, 1376
PcsI	WCGNNNNNNNCGW	3 cut(s)	18, 96, 144
PctI	GAATGC	1 cut(s)	2579
PdiI	GCCGGC	1 cut(s)	133
PdmI	GAANNNNTTC	2 cut(s)	2191, 2463
PfeI	GAWTC	7 cut(s)	124, 619, 1333, 1400, 2044, 2192, 2854
Pfl23II	CGTACG	1 cut(s)	919
PflFI	GACNNNGTC	1 cut(s)	2952
PflMI	CCANNNNNTGG	1 cut(s)	2038
PfoI	TCCNGGA	2 cut(s)	38, 1920
Ple19I	CGATCG	1 cut(s)	265
PleI	GAGTC	4 cut(s)	199, 1406, 1461, 2452
PpsI	GAGTC	4 cut(s)	199, 1406, 1461, 2452
Psp124BI	GAGCTC	2 cut(s)	1301, 2062
PspLI	CGTACG	1 cut(s)	919
PspN4I	GGNNCC	8 cut(s)	44, 119, 306, 1206, 1506, 2248, 2683, 2770
PspPI	GGNCC	3 cut(s)	1724, 2077, 2321
PsrI	GAACNNNNNNTAC	4 cut(s)	481, 513, 1860, 1892
PstI	CTGCAG	2 cut(s)	1110, 1462
PstNI	CAGNNNCTG	6 cut(s)	413, 845, 2285, 2312, 2540, 2670
PsuI	RGATCY	6 cut(s)	626, 1345, 1741, 1810, 2014, 2231
PsyI	GACNNNGTC	1 cut(s)	2952
PvuI	CGATCG	1 cut(s)	265
RigI	GGCCGGCC	1 cut(s)	135
RsaI	GTAC	8 cut(s)	600, 921, 1206, 1599, 2645, 2706, 2715, 2885
RsaNI	GTAC	8 cut(s)	599, 920, 1205, 1598, 2644, 2705, 2714, 2884
SacI	GAGCTC	2 cut(s)	1301, 2062
SapI	GCTCTTC	3 cut(s)	209, 1289, 1376
SaqAI	TTAA	7 cut(s)	254, 1712, 1859, 1997, 2430, 2574, 2594
Sau96I	GGNCC	3 cut(s)	1724, 2077, 2321
SbfI	CCTGCAGG	1 cut(s)	1110
SchI	GAGTC	4 cut(s)	200, 1406, 1461, 2453
SdaI	CCTGCAGG	1 cut(s)	1110
SduI	GDGCHC	5 cut(s)	147, 1301, 1507, 2062, 2909
SexAI	ACCWGGT	2 cut(s)	48, 2914
SfcI	CTRYAG	5 cut(s)	1106, 1458, 2656, 2662, 2828
SinI	GGWCC	2 cut(s)	2077, 2321
SmaI	CCCGGG	1 cut(s)	558
SmlI	CTYRAG	3 cut(s)	952, 965, 1034
SmoI	CTYRAG	3 cut(s)	952, 965, 1034
SpeI	ACTAGT	1 cut(s)	676
Sse8387I	CCTGCAGG	1 cut(s)	1110
SsiI	CCGC	8 cut(s)	115, 518, 550, 631, 1152, 1829, 2222, 2698
SspI	AATATT	1 cut(s)	1799
SspMI	CTAG	7 cut(s)	224, 365, 605, 677, 1556, 1745, 1871
SstI	GAGCTC	2 cut(s)	1301, 2062
StyI	CCWWGG	3 cut(s)	76, 308, 1990
TaiI	ACGT	5 cut(s)	150, 182, 672, 1524, 1882
TaqI	TCGA	5 cut(s)	261, 1329, 1913, 2260, 2299
TatI	WGTACW	1 cut(s)	1597
TauI	GCSGC	2 cut(s)	118, 1832
TfiI	GAWTC	7 cut(s)	124, 619, 1333, 1400, 2044, 2192, 2854
Tru1I	TTAA	7 cut(s)	254, 1712, 1859, 1997, 2430, 2574, 2594
Tru9I	TTAA	7 cut(s)	254, 1712, 1859, 1997, 2430, 2574, 2594
TscAI	CASTG	8 cut(s)	539, 883, 1018, 1324, 2215, 2595, 2654, 2671
TseFI	GTSAC	5 cut(s)	67, 433, 2400, 2483, 2530
Tsp45I	GTSAC	5 cut(s)	67, 433, 2400, 2483, 2530
TspGWI	ACGGA	3 cut(s)	572, 2052, 2703
TspMI	CCCGGG	1 cut(s)	556
TspRI	CASTG	8 cut(s)	539, 883, 1018, 1324, 2215, 2595, 2654, 2671
Tth111I	GACNNNGTC	1 cut(s)	2952
Van91I	CCANNNNNTGG	1 cut(s)	2038
VneI	GTGCAC	1 cut(s)	143
VpaK11BI	GGWCC	2 cut(s)	2077, 2321
XagI	CCTNNNNNAGG	1 cut(s)	2919
XapI	RAATTY	7 cut(s)	417, 793, 2160, 2563, 2605, 2821, 2844
XbaI	TCTAGA	1 cut(s)	223
XceI	RCATGY	2 cut(s)	1640, 2097
XcmI	CCANNNNNNNNNTGG	2 cut(s)	46, 1821
XmaI	CCCGGG	1 cut(s)	556
XmnI	GAANNNNTTC	2 cut(s)	2191, 2463
XspI	CTAG	7 cut(s)	224, 365, 605, 677, 1556, 1745, 1871
Zsp2I	ATGCAT	1 cut(s)	1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.