Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49500 AT3G49500 AT3G49500 AT3G49500 AT3G49500 |
| fragaria_vesca | FvH4_2g29170 FvH4_2g29170 |
| malus_domestica | MD15G1124800.v1.1 |
| prunus_persica | Prupe.1G480300_v2.0.a1 Prupe.1G480300_v2.0.a1 |
| pyrus_communis | pycom15g11240 |
| rosa_chinensis | RchiOBHm_Chr4g0412141 |
| rosa_laevigata | RLG00000008315 |
| rosa_multiflora | Rmu_co8504827.1_g000001 Rmu_sc0004221.1_g000009 |
| rosa_roxburghii | Rroxscaffold_5G00356410 |
| rosa_rugosa | Rorug04G0105800 |
| rosa_samantha | Rh4AG171600 Rh4BG170800 Rh4CG182500 Rh4DG166000 |
| rosa_wichuraiana | Rw0G000010 Rw4G014320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2009 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 716 |
| Acc36I | ACCTGC | 1 cut(s) | 2165 |
| Acc65I | GGTACC | 1 cut(s) | 3570 |
| AccB1I | GGYRCC | 1 cut(s) | 3570 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3526 |
| AccBSI | CCGCTC | 2 cut(s) | 3089, 3253 |
| AccI | GTMKAC | 3 cut(s) | 1676, 2224, 2351 |
| AciI | CCGC | 9 cut(s) | 658, 826, 1213, 1503, 2153, 2232, 2794, 3089, 3253 |
| AclI | AACGTT | 2 cut(s) | 2012, 2031 |
| AclWI | GGATC | 9 cut(s) | 482, 495, 740, 1199, 1212, 2663, 3078, 3205, 3488 |
| AcoI | YGGCCR | 2 cut(s) | 899, 1880 |
| AcsI | RAATTY | 6 cut(s) | 5, 169, 1432, 2967, 3287, 3319 |
| AcuI | CTGAAG | 5 cut(s) | 940, 1202, 1251, 2672, 3164 |
| AcyI | GRCGYC | 1 cut(s) | 2695 |
| AdeI | CACNNNGTG | 3 cut(s) | 1832, 2440, 3526 |
| AfaI | GTAC | 5 cut(s) | 968, 1514, 2319, 2918, 3572 |
| AflIII | ACRYGT | 3 cut(s) | 1455, 2434, 2776 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2947 |
| AhlI | ACTAGT | 1 cut(s) | 1604 |
| AjiI | CACGTC | 1 cut(s) | 1428 |
| AjnI | CCWGG | 8 cut(s) | 674, 1521, 1559, 1984, 2467, 2503, 3082, 3445 |
| AleI | CACNNNNGTG | 1 cut(s) | 2105 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 408, 440 |
| Alw21I | GWGCWC | 1 cut(s) | 3128 |
| Alw26I | GTCTC | 2 cut(s) | 1542, 2971 |
| AlwI | GGATC | 9 cut(s) | 482, 495, 740, 1199, 1212, 2663, 3078, 3205, 3488 |
| Ama87I | CYCGRG | 1 cut(s) | 1280 |
| ApaI | GGGCCC | 1 cut(s) | 338 |
| ApeKI | GCWGC | 7 cut(s) | 281, 1100, 1649, 2156, 2846, 3017, 3485 |
| ApoI | RAATTY | 6 cut(s) | 5, 169, 1432, 2967, 3287, 3319 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2588, 2620 |
| AseI | ATTAAT | 1 cut(s) | 1377 |
| Asp718I | GGTACC | 1 cut(s) | 3570 |
| AspA2I | CCTAGG | 1 cut(s) | 2755 |
| AspLEI | GCGC | 1 cut(s) | 2138 |
| AsuC2I | CCSGG | 1 cut(s) | 2875 |
| AsuHPI | GGTGA | 6 cut(s) | 243, 663, 889, 1243, 2561, 3472 |
| AsuII | TTCGAA | 1 cut(s) | 9 |
| AvaI | CYCGRG | 1 cut(s) | 1280 |
| AvaII | GGWCC | 6 cut(s) | 147, 372, 458, 1473, 2596, 3443 |
| AvrII | CCTAGG | 1 cut(s) | 2755 |
| AxyI | CCTNAGG | 1 cut(s) | 2249 |
| BaeGI | GKGCMC | 2 cut(s) | 338, 1028 |
| BalI | TGGCCA | 2 cut(s) | 901, 1882 |
| BamHI | GGATCC | 2 cut(s) | 487, 1204 |
| BanI | GGYRCC | 1 cut(s) | 3570 |
| BanII | GRGCYC | 2 cut(s) | 228, 338 |
| BauI | CACGAG | 1 cut(s) | 2093 |
| BbsI | GAAGAC | 2 cut(s) | 1265, 2946 |
| Bbv12I | GWGCWC | 1 cut(s) | 3128 |
| BbvCI | CCTCAGC | 1 cut(s) | 3373 |
| BbvI | GCAGC | 7 cut(s) | 293, 1087, 1636, 2168, 2858, 3004, 3497 |
| BceAI | ACGGC | 1 cut(s) | 273 |
| BciT130I | CCWGG | 8 cut(s) | 676, 1523, 1561, 1986, 2469, 2505, 3084, 3447 |
| BclI | TGATCA | 1 cut(s) | 1770 |
| BcnI | CCSGG | 1 cut(s) | 2875 |
| BcoDI | GTCTC | 2 cut(s) | 1542, 2971 |
| BcuI | ACTAGT | 1 cut(s) | 1604 |
| BfmI | CTRYAG | 4 cut(s) | 186, 211, 1689, 2673 |
| BfuAI | ACCTGC | 1 cut(s) | 2165 |
| BglII | AGATCT | 1 cut(s) | 82 |
| BlnI | CCTAGG | 1 cut(s) | 2755 |
| BlpI | GCTNAGC | 1 cut(s) | 2139 |
| BmcAI | AGTACT | 1 cut(s) | 2319 |
| Bme1390I | CCNGG | 9 cut(s) | 676, 1523, 1561, 1986, 2469, 2505, 2875, 3084, 3447 |
| Bme18I | GGWCC | 6 cut(s) | 147, 372, 458, 1473, 2596, 3443 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2947 |
| BmeT110I | CYCGRG | 1 cut(s) | 1280 |
| BmgBI | CACGTC | 1 cut(s) | 1428 |
| BmrFI | CCNGG | 9 cut(s) | 676, 1523, 1561, 1986, 2469, 2505, 2875, 3084, 3447 |
| BmrI | ACTGGG | 3 cut(s) | 1127, 3042, 3204 |
| BmuI | ACTGGG | 3 cut(s) | 1127, 3042, 3204 |
| BpiI | GAAGAC | 2 cut(s) | 1265, 2946 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 445, 477 |
| BpmI | CTGGAG | 5 cut(s) | 138, 2071, 2490, 3105, 3468 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1209, 3373 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2139 |
| Bpu14I | TTCGAA | 1 cut(s) | 9 |
| BpuEI | CTTGAG | 3 cut(s) | 24, 2342, 3095 |
| BpuMI | CCSGG | 1 cut(s) | 2875 |
| BsaBI | GATNNNNATC | 3 cut(s) | 744, 2622, 3069 |
| BsaHI | GRCGYC | 1 cut(s) | 2695 |
| BsaI | GGTCTC | 1 cut(s) | 1542 |
| BsaJI | CCNNGG | 9 cut(s) | 674, 675, 749, 829, 1281, 2503, 2755, 2909, 3520 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 364, 394, 3107, 3137, 3441, 3471 |
| Bse1I | ACTGG | 6 cut(s) | 1042, 1133, 1794, 2947, 3048, 3199 |
| Bse21I | CCTNAGG | 1 cut(s) | 2249 |
| Bse3DI | GCAATG | 2 cut(s) | 2357, 2776 |
| Bse8I | GATNNNNATC | 3 cut(s) | 744, 2622, 3069 |
| BseBI | CCWGG | 8 cut(s) | 676, 1523, 1561, 1986, 2469, 2505, 3084, 3447 |
| BseDI | CCNNGG | 9 cut(s) | 674, 675, 749, 829, 1281, 2503, 2755, 2909, 3520 |
| BseJI | GATNNNNATC | 3 cut(s) | 744, 2622, 3069 |
| BseMI | GCAATG | 2 cut(s) | 2357, 2776 |
| BseMII | CTCAG | 9 cut(s) | 330, 1061, 2130, 2414, 2720, 2829, 3021, 3248, 3387 |
| BseNI | ACTGG | 6 cut(s) | 1042, 1133, 1794, 2947, 3048, 3199 |
| BseRI | GAGGAG | 3 cut(s) | 379, 382, 1087 |
| BseSI | GKGCMC | 2 cut(s) | 338, 1028 |
| BseXI | GCAGC | 7 cut(s) | 293, 1087, 1636, 2168, 2858, 3004, 3497 |
| BsgI | GTGCAG | 1 cut(s) | 2193 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1507 |
| BshNI | GGYRCC | 1 cut(s) | 3570 |
| BsiEI | CGRYCG | 1 cut(s) | 1507 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3128 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1280 |
| BsiSI | CCGG | 2 cut(s) | 1903, 2874 |
| BslFI | GGGAC | 4 cut(s) | 562, 704, 2609, 3171 |
| BsmAI | GTCTC | 2 cut(s) | 1542, 2971 |
| BsmFI | GGGAC | 4 cut(s) | 562, 704, 2609, 3171 |
| BsmI | GAATGC | 1 cut(s) | 1580 |
| Bso31I | GGTCTC | 1 cut(s) | 1542 |
| BsoBI | CYCGRG | 1 cut(s) | 1280 |
| Bsp119I | TTCGAA | 1 cut(s) | 9 |
| Bsp120I | GGGCCC | 1 cut(s) | 334 |
| Bsp1286I | GDGCHC | 4 cut(s) | 228, 338, 1028, 3128 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2139 |
| Bsp19I | CCATGG | 1 cut(s) | 829 |
| BspACI | CCGC | 9 cut(s) | 658, 826, 1213, 1503, 2153, 2232, 2794, 3089, 3253 |
| BspCNI | CTCAG | 9 cut(s) | 331, 1062, 2131, 2413, 2719, 2830, 3022, 3249, 3386 |
| BspMAI | CTGCAG | 2 cut(s) | 190, 2677 |
| BspMI | ACCTGC | 1 cut(s) | 2165 |
| BspPI | GGATC | 9 cut(s) | 482, 495, 740, 1199, 1212, 2663, 3078, 3205, 3488 |
| BspQI | GCTCTTC | 1 cut(s) | 2639 |
| BspT104I | TTCGAA | 1 cut(s) | 9 |
| BspT107I | GGYRCC | 1 cut(s) | 3570 |
| BspTNI | GGTCTC | 1 cut(s) | 1542 |
| BsrBI | CCGCTC | 2 cut(s) | 3089, 3253 |
| BsrDI | GCAATG | 2 cut(s) | 2357, 2776 |
| BsrI | ACTGG | 6 cut(s) | 1042, 1133, 1794, 2947, 3048, 3199 |
| BssECI | CCNNGG | 9 cut(s) | 674, 675, 749, 829, 1281, 2503, 2755, 2909, 3520 |
| BssNAI | GTATAC | 1 cut(s) | 2225 |
| BssNI | GRCGYC | 1 cut(s) | 2695 |
| BssSI | CACGAG | 1 cut(s) | 2093 |
| BssT1I | CCWWGG | 4 cut(s) | 749, 829, 2755, 2909 |
| Bst1107I | GTATAC | 1 cut(s) | 2225 |
| Bst2BI | CACGAG | 1 cut(s) | 2093 |
| Bst2UI | CCWGG | 8 cut(s) | 676, 1523, 1561, 1986, 2469, 2505, 3084, 3447 |
| Bst4CI | ACNGT | 4 cut(s) | 1030, 1055, 1553, 1690 |
| Bst6I | CTCTTC | 4 cut(s) | 2639, 3031, 3177, 3560 |
| BstACI | GRCGYC | 1 cut(s) | 2695 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 513, 1646, 2498 |
| BstBI | TTCGAA | 1 cut(s) | 9 |
| BstC8I | GCNNGC | 4 cut(s) | 286, 561, 1367, 1855 |
| BstDSI | CCRYGG | 2 cut(s) | 829, 3520 |
| BstEII | GGTNACC | 1 cut(s) | 1345 |
| BstHHI | GCGC | 1 cut(s) | 2138 |
| BstMAI | GTCTC | 2 cut(s) | 1542, 2971 |
| BstMCI | CGRYCG | 1 cut(s) | 1507 |
| BstNI | CCWGG | 8 cut(s) | 676, 1523, 1561, 1986, 2469, 2505, 3084, 3447 |
| BstNSI | RCATGY | 8 cut(s) | 407, 507, 563, 1149, 1369, 2215, 2780, 3203 |
| BstPI | GGTNACC | 1 cut(s) | 1345 |
| BstSCI | CCNGG | 9 cut(s) | 674, 1521, 1559, 1984, 2467, 2503, 2873, 3082, 3445 |
| BstSFI | CTRYAG | 4 cut(s) | 186, 211, 1689, 2673 |
| BstSLI | GKGCMC | 2 cut(s) | 338, 1028 |
| BstV1I | GCAGC | 7 cut(s) | 293, 1087, 1636, 2168, 2858, 3004, 3497 |
| BstV2I | GAAGAC | 2 cut(s) | 1265, 2946 |
| BstX2I | RGATCY | 4 cut(s) | 82, 487, 1204, 3070 |
| BstYI | RGATCY | 4 cut(s) | 82, 487, 1204, 3070 |
| BstZ17I | GTATAC | 1 cut(s) | 2225 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2249 |
| BtgI | CCRYGG | 2 cut(s) | 829, 3520 |
| BtgZI | GCGATG | 1 cut(s) | 1908 |
| BtrI | CACGTC | 1 cut(s) | 1428 |
| BtsI | GCAGTG | 4 cut(s) | 528, 570, 2124, 2803 |
| BveI | ACCTGC | 1 cut(s) | 2165 |
| Cac8I | GCNNGC | 4 cut(s) | 286, 561, 1367, 1855 |
| CfoI | GCGC | 1 cut(s) | 2138 |
| CseI | GACGC | 2 cut(s) | 1151, 2684 |
| Csp6I | GTAC | 5 cut(s) | 967, 1513, 2318, 2917, 3571 |
| CviQI | GTAC | 5 cut(s) | 967, 1513, 2318, 2917, 3571 |
| DraI | TTTAAA | 2 cut(s) | 544, 1462 |
| DraIII | CACNNNGTG | 3 cut(s) | 1832, 2440, 3526 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 716 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2947 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 716 |
| EaeI | YGGCCR | 2 cut(s) | 899, 1880 |
| Eam1104I | CTCTTC | 4 cut(s) | 2639, 3031, 3177, 3560 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2947 |
| EarI | CTCTTC | 4 cut(s) | 2639, 3031, 3177, 3560 |
| Eco130I | CCWWGG | 4 cut(s) | 749, 829, 2755, 2909 |
| Eco147I | AGGCCT | 2 cut(s) | 1265, 3371 |
| Eco24I | GRGCYC | 2 cut(s) | 228, 338 |
| Eco31I | GGTCTC | 1 cut(s) | 1542 |
| Eco47I | GGWCC | 6 cut(s) | 147, 372, 458, 1473, 2596, 3443 |
| Eco57I | CTGAAG | 5 cut(s) | 940, 1202, 1251, 2672, 3164 |
| Eco81I | CCTNAGG | 1 cut(s) | 2249 |
| Eco88I | CYCGRG | 1 cut(s) | 1280 |
| Eco91I | GGTNACC | 1 cut(s) | 1345 |
| EcoO109I | RGGNCCY | 5 cut(s) | 335, 458, 2245, 2556, 2596 |
| EcoO65I | GGTNACC | 1 cut(s) | 1345 |
| EcoRI | GAATTC | 2 cut(s) | 5, 3287 |
| EcoRII | CCWGG | 8 cut(s) | 674, 1521, 1559, 1984, 2467, 2503, 3082, 3445 |
| EcoT14I | CCWWGG | 4 cut(s) | 749, 829, 2755, 2909 |
| EcoT22I | ATGCAT | 2 cut(s) | 235, 3112 |
| EcoT38I | GRGCYC | 2 cut(s) | 228, 338 |
| ErhI | CCWWGG | 4 cut(s) | 749, 829, 2755, 2909 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 500, 532, 2670, 2702 |
| FaqI | GGGAC | 4 cut(s) | 562, 704, 2609, 3171 |
| FauI | CCCGC | 1 cut(s) | 833 |
| FauNDI | CATATG | 2 cut(s) | 1681, 3061 |
| FbaI | TGATCA | 1 cut(s) | 1770 |
| FblI | GTMKAC | 3 cut(s) | 1676, 2224, 2351 |
| FriOI | GRGCYC | 2 cut(s) | 228, 338 |
| GlaI | GCGC | 1 cut(s) | 2137 |
| GsuI | CTGGAG | 5 cut(s) | 138, 2071, 2490, 3105, 3468 |
| HapII | CCGG | 2 cut(s) | 1903, 2874 |
| HgaI | GACGC | 2 cut(s) | 1151, 2684 |
| HhaI | GCGC | 1 cut(s) | 2138 |
| Hin1I | GRCGYC | 1 cut(s) | 2695 |
| Hin6I | GCGC | 1 cut(s) | 2136 |
| HinP1I | GCGC | 1 cut(s) | 2136 |
| HincII | GTYRAC | 2 cut(s) | 2217, 2961 |
| HindII | GTYRAC | 2 cut(s) | 2217, 2961 |
| HindIII | AAGCTT | 2 cut(s) | 1193, 2571 |
| HpaI | GTTAAC | 1 cut(s) | 2217 |
| HpaII | CCGG | 2 cut(s) | 1903, 2874 |
| HphI | GGTGA | 6 cut(s) | 243, 663, 889, 1243, 2561, 3472 |
| Hpy188I | TCNGA | 9 cut(s) | 397, 1051, 1392, 1482, 1756, 2403, 3031, 3279, 3585 |
| HpyCH4III | ACNGT | 4 cut(s) | 1030, 1055, 1553, 1690 |
| HpyCH4IV | ACGT | 5 cut(s) | 1427, 1455, 2012, 2031, 2436 |
| HpySE526I | ACGT | 5 cut(s) | 1427, 1455, 2012, 2031, 2436 |
| Hsp92I | GRCGYC | 1 cut(s) | 2695 |
| HspAI | GCGC | 1 cut(s) | 2136 |
| KpnI | GGTACC | 1 cut(s) | 3574 |
| Ksp22I | TGATCA | 1 cut(s) | 1770 |
| KspAI | GTTAAC | 1 cut(s) | 2217 |
| LguI | GCTCTTC | 1 cut(s) | 2639 |
| LmnI | GCTCC | 5 cut(s) | 223, 1074, 1411, 3086, 3241 |
| Lsp1109I | GCAGC | 7 cut(s) | 293, 1087, 1636, 2168, 2858, 3004, 3497 |
| MaeII | ACGT | 5 cut(s) | 1427, 1455, 2012, 2031, 2436 |
| MbiI | CCGCTC | 2 cut(s) | 3089, 3253 |
| MfeI | CAATTG | 1 cut(s) | 1541 |
| MflI | RGATCY | 4 cut(s) | 82, 487, 1204, 3070 |
| MhlI | GDGCHC | 4 cut(s) | 228, 338, 1028, 3128 |
| MlsI | TGGCCA | 2 cut(s) | 901, 1882 |
| MluNI | TGGCCA | 2 cut(s) | 901, 1882 |
| MlyI | GAGTC | 5 cut(s) | 167, 1946, 2973, 3268, 3533 |
| MmeI | TCCRAC | 4 cut(s) | 714, 1197, 1589, 3246 |
| Mox20I | TGGCCA | 2 cut(s) | 901, 1882 |
| Mph1103I | ATGCAT | 2 cut(s) | 235, 3112 |
| MscI | TGGCCA | 2 cut(s) | 901, 1882 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2105, 2520, 2565 |
| Msp20I | TGGCCA | 2 cut(s) | 901, 1882 |
| MspA1I | CMGCKG | 2 cut(s) | 3142, 3488 |
| MspI | CCGG | 2 cut(s) | 1903, 2874 |
| MspR9I | CCNGG | 9 cut(s) | 676, 1523, 1561, 1986, 2469, 2505, 2875, 3084, 3447 |
| MunI | CAATTG | 1 cut(s) | 1541 |
| Mva1269I | GAATGC | 1 cut(s) | 1580 |
| MvaI | CCWGG | 8 cut(s) | 676, 1523, 1561, 1986, 2469, 2505, 3084, 3447 |
| NciI | CCSGG | 1 cut(s) | 2875 |
| NcoI | CCATGG | 1 cut(s) | 829 |
| NdeI | CATATG | 2 cut(s) | 1681, 3061 |
| NmuCI | GTSAC | 3 cut(s) | 2582, 2608, 3050 |
| NsiI | ATGCAT | 2 cut(s) | 235, 3112 |
| NspI | RCATGY | 8 cut(s) | 407, 507, 563, 1149, 1369, 2215, 2780, 3203 |
| NspV | TTCGAA | 1 cut(s) | 9 |
| OliI | CACNNNNGTG | 1 cut(s) | 2105 |
| PaeI | GCATGC | 2 cut(s) | 563, 1369 |
| PasI | CCCWGGG | 1 cut(s) | 675 |
| PceI | AGGCCT | 2 cut(s) | 1265, 3371 |
| PciI | ACATGT | 1 cut(s) | 2776 |
| PciSI | GCTCTTC | 1 cut(s) | 2639 |
| PctI | GAATGC | 1 cut(s) | 1580 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3526 |
| PfoI | TCCNGGA | 3 cut(s) | 2467, 3082, 3445 |
| PleI | GAGTC | 5 cut(s) | 166, 1945, 2973, 3267, 3533 |
| PpsI | GAGTC | 5 cut(s) | 166, 1945, 2973, 3267, 3533 |
| PpuMI | RGGWCCY | 2 cut(s) | 458, 2596 |
| PscI | ACATGT | 1 cut(s) | 2776 |
| PshBI | ATTAAT | 1 cut(s) | 1377 |
| PsiI | TTATAA | 1 cut(s) | 2009 |
| Psp1406I | AACGTT | 2 cut(s) | 2012, 2031 |
| Psp5II | RGGWCCY | 2 cut(s) | 458, 2596 |
| Psp6I | CCWGG | 8 cut(s) | 674, 1521, 1559, 1984, 2467, 2503, 3082, 3445 |
| PspEI | GGTNACC | 1 cut(s) | 1345 |
| PspGI | CCWGG | 8 cut(s) | 674, 1521, 1559, 1984, 2467, 2503, 3082, 3445 |
| PspOMI | GGGCCC | 1 cut(s) | 334 |
| PspPPI | RGGWCCY | 2 cut(s) | 458, 2596 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2187, 2219 |
| PstI | CTGCAG | 2 cut(s) | 190, 2677 |
| PsuI | RGATCY | 4 cut(s) | 82, 487, 1204, 3070 |
| PvuII | CAGCTG | 2 cut(s) | 3142, 3488 |
| RsaI | GTAC | 5 cut(s) | 968, 1514, 2319, 2918, 3572 |
| RsaNI | GTAC | 5 cut(s) | 967, 1513, 2318, 2917, 3571 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2105, 2520, 2565 |
| SapI | GCTCTTC | 1 cut(s) | 2639 |
| ScaI | AGTACT | 1 cut(s) | 2319 |
| SchI | GAGTC | 5 cut(s) | 167, 1946, 2973, 3268, 3533 |
| ScrFI | CCNGG | 9 cut(s) | 676, 1523, 1561, 1986, 2469, 2505, 2875, 3084, 3447 |
| SduI | GDGCHC | 4 cut(s) | 228, 338, 1028, 3128 |
| SfcI | CTRYAG | 4 cut(s) | 186, 211, 1689, 2673 |
| SfuI | TTCGAA | 1 cut(s) | 9 |
| SinI | GGWCC | 6 cut(s) | 147, 372, 458, 1473, 2596, 3443 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2105, 2520, 2565 |
| SmlI | CTYRAG | 3 cut(s) | 39, 2321, 3074 |
| SmoI | CTYRAG | 3 cut(s) | 39, 2321, 3074 |
| SpeI | ACTAGT | 1 cut(s) | 1604 |
| SphI | GCATGC | 2 cut(s) | 563, 1369 |
| SseBI | AGGCCT | 2 cut(s) | 1265, 3371 |
| SsiI | CCGC | 9 cut(s) | 658, 826, 1213, 1503, 2153, 2232, 2794, 3089, 3253 |
| SspI | AATATT | 1 cut(s) | 2046 |
| StuI | AGGCCT | 2 cut(s) | 1265, 3371 |
| StyD4I | CCNGG | 9 cut(s) | 674, 1521, 1559, 1984, 2467, 2503, 2873, 3082, 3445 |
| StyI | CCWWGG | 4 cut(s) | 749, 829, 2755, 2909 |
| TaaI | ACNGT | 4 cut(s) | 1030, 1055, 1553, 1690 |
| TaiI | ACGT | 5 cut(s) | 1430, 1458, 2015, 2034, 2439 |
| TaqI | TCGA | 4 cut(s) | 9, 174, 726, 3209 |
| TatI | WGTACW | 2 cut(s) | 1512, 2317 |
| TauI | GCSGC | 5 cut(s) | 661, 2156, 2234, 3092, 3256 |
| TseFI | GTSAC | 3 cut(s) | 2582, 2608, 3050 |
| TseI | GCWGC | 7 cut(s) | 281, 1100, 1649, 2156, 2846, 3017, 3485 |
| Tsp45I | GTSAC | 3 cut(s) | 2582, 2608, 3050 |
| TspGWI | ACGGA | 3 cut(s) | 2117, 2579, 3537 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3526 |
| VpaK11BI | GGWCC | 6 cut(s) | 147, 372, 458, 1473, 2596, 3443 |
| VspI | ATTAAT | 1 cut(s) | 1377 |
| XapI | RAATTY | 6 cut(s) | 5, 169, 1432, 2967, 3287, 3319 |
| XceI | RCATGY | 8 cut(s) | 407, 507, 563, 1149, 1369, 2215, 2780, 3203 |
| XmaJI | CCTAGG | 1 cut(s) | 2755 |
| XmiI | GTMKAC | 3 cut(s) | 1676, 2224, 2351 |
| ZrmI | AGTACT | 1 cut(s) | 2319 |
| Zsp2I | ATGCAT | 2 cut(s) | 235, 3112 |