Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49500 AT3G49500 AT3G49500 AT3G49500 AT3G49500 |
| fragaria_vesca | FvH4_2g29170 FvH4_2g29170 |
| malus_domestica | MD15G1124800.v1.1 |
| prunus_persica | Prupe.1G480300_v2.0.a1 Prupe.1G480300_v2.0.a1 |
| pyrus_communis | pycom15g11240 |
| rosa_chinensis | RchiOBHm_Chr4g0412141 |
| rosa_laevigata | RLG00000008315 |
| rosa_multiflora | Rmu_co8504827.1_g000001 Rmu_sc0004221.1_g000009 |
| rosa_roxburghii | Rroxscaffold_5G00356410 |
| rosa_rugosa | Rorug04G0105800 |
| rosa_samantha | Rh4AG171600 Rh4BG170800 Rh4CG182500 Rh4DG166000 |
| rosa_wichuraiana | Rw0G000010 Rw4G014320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 972, 2726 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 719, 2962 |
| Acc36I | ACCTGC | 1 cut(s) | 120 |
| Acc65I | GGTACC | 1 cut(s) | 3387 |
| AccB1I | GGYRCC | 2 cut(s) | 1905, 3387 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1895 |
| AccBSI | CCGCTC | 1 cut(s) | 3259 |
| AccI | GTMKAC | 6 cut(s) | 64, 1679, 1695, 2230, 2357, 3358 |
| AciI | CCGC | 4 cut(s) | 661, 883, 3259, 3523 |
| AclWI | GGATC | 9 cut(s) | 485, 498, 743, 944, 1202, 1215, 1823, 2669, 3084 |
| AcoI | YGGCCR | 2 cut(s) | 1886, 3142 |
| AcsI | RAATTY | 7 cut(s) | 169, 512, 1139, 1965, 2728, 2973, 3293 |
| AcuI | CTGAAG | 5 cut(s) | 30, 930, 1205, 1254, 3272 |
| AcyI | GRCGYC | 1 cut(s) | 2701 |
| AdeI | CACNNNGTG | 1 cut(s) | 1838 |
| AfaI | GTAC | 8 cut(s) | 95, 1517, 2325, 2924, 2951, 2960, 3389, 3575 |
| AflIII | ACRYGT | 2 cut(s) | 67, 2782 |
| AjnI | CCWGG | 5 cut(s) | 1562, 3088, 3144, 3390, 3479 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 93, 125, 317, 349, 915, 947 |
| AleI | CACNNNNGTG | 1 cut(s) | 2111 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 411, 443 |
| Alw21I | GWGCWC | 4 cut(s) | 180, 1124, 3134, 3283 |
| Alw26I | GTCTC | 3 cut(s) | 522, 600, 1150 |
| Alw44I | GTGCAC | 1 cut(s) | 1120 |
| AlwI | GGATC | 9 cut(s) | 485, 498, 743, 944, 1202, 1215, 1823, 2669, 3084 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 638 |
| ApaI | GGGCCC | 1 cut(s) | 341 |
| ApaLI | GTGCAC | 1 cut(s) | 1120 |
| ApeKI | GCWGC | 8 cut(s) | 284, 1103, 1652, 1987, 2159, 2162, 2237, 2852 |
| ApoI | RAATTY | 7 cut(s) | 169, 512, 1139, 1965, 2728, 2973, 3293 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1046, 1078, 2594, 2626 |
| Asp718I | GGTACC | 1 cut(s) | 3387 |
| AspLEI | GCGC | 3 cut(s) | 385, 2144, 3522 |
| AsuC2I | CCSGG | 3 cut(s) | 1992, 2475, 3054 |
| AsuII | TTCGAA | 1 cut(s) | 3548 |
| AvaII | GGWCC | 5 cut(s) | 147, 852, 1552, 2602, 3213 |
| AxyI | CCTNAGG | 2 cut(s) | 909, 2255 |
| BaeGI | GKGCMC | 3 cut(s) | 341, 1124, 1908 |
| BalI | TGGCCA | 2 cut(s) | 1888, 3144 |
| BamHI | GGATCC | 2 cut(s) | 490, 1207 |
| BanI | GGYRCC | 2 cut(s) | 1905, 3387 |
| BanII | GRGCYC | 2 cut(s) | 180, 341 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3257, 3289 |
| BbsI | GAAGAC | 3 cut(s) | 1268, 1457, 1481 |
| Bbv12I | GWGCWC | 4 cut(s) | 180, 1124, 3134, 3283 |
| BbvI | GCAGC | 8 cut(s) | 296, 1090, 1639, 1999, 2171, 2174, 2224, 2864 |
| BceAI | ACGGC | 1 cut(s) | 1507 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3482, 3516 |
| BciT130I | CCWGG | 5 cut(s) | 1564, 3090, 3146, 3392, 3481 |
| BcnI | CCSGG | 3 cut(s) | 1992, 2475, 3054 |
| BcoDI | GTCTC | 3 cut(s) | 522, 600, 1150 |
| BfmI | CTRYAG | 3 cut(s) | 808, 2369, 3274 |
| BfoI | RGCGCY | 2 cut(s) | 386, 3523 |
| BfuAI | ACCTGC | 1 cut(s) | 120 |
| BglII | AGATCT | 1 cut(s) | 2629 |
| BlpI | GCTNAGC | 2 cut(s) | 2145, 2241 |
| BmcAI | AGTACT | 1 cut(s) | 1517 |
| Bme1390I | CCNGG | 8 cut(s) | 1564, 1992, 2475, 3054, 3090, 3146, 3392, 3481 |
| Bme18I | GGWCC | 5 cut(s) | 147, 852, 1552, 2602, 3213 |
| BmrFI | CCNGG | 8 cut(s) | 1564, 1992, 2475, 3054, 3090, 3146, 3392, 3481 |
| BmrI | ACTGGG | 1 cut(s) | 3210 |
| BmsI | GCATC | 8 cut(s) | 271, 1135, 1697, 2085, 2494, 2995, 3103, 3386 |
| BmuI | ACTGGG | 1 cut(s) | 3210 |
| BpiI | GAAGAC | 3 cut(s) | 1268, 1457, 1481 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2644, 2676 |
| BpmI | CTGGAG | 3 cut(s) | 2077, 3101, 3111 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1212 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2145, 2241 |
| Bpu14I | TTCGAA | 1 cut(s) | 3548 |
| BpuEI | CTTGAG | 4 cut(s) | 138, 1363, 2348, 2664 |
| BpuMI | CCSGG | 3 cut(s) | 1992, 2475, 3054 |
| BsaBI | GATNNNNATC | 3 cut(s) | 747, 2628, 3075 |
| BsaHI | GRCGYC | 1 cut(s) | 2701 |
| BsaJI | CCNNGG | 5 cut(s) | 678, 752, 765, 855, 2546 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3113, 3143 |
| Bse118I | RCCGGY | 1 cut(s) | 1908 |
| Bse1I | ACTGG | 7 cut(s) | 1045, 1965, 2037, 2137, 2338, 2884, 3205 |
| Bse21I | CCTNAGG | 2 cut(s) | 909, 2255 |
| Bse3DI | GCAATG | 3 cut(s) | 531, 1800, 2782 |
| Bse8I | GATNNNNATC | 3 cut(s) | 747, 2628, 3075 |
| BseBI | CCWGG | 5 cut(s) | 1564, 3090, 3146, 3392, 3481 |
| BseDI | CCNNGG | 5 cut(s) | 678, 752, 765, 855, 2546 |
| BseJI | GATNNNNATC | 3 cut(s) | 747, 2628, 3075 |
| BseMI | GCAATG | 3 cut(s) | 531, 1800, 2782 |
| BseNI | ACTGG | 7 cut(s) | 1045, 1965, 2037, 2137, 2338, 2884, 3205 |
| BseRI | GAGGAG | 5 cut(s) | 382, 385, 1090, 1434, 2960 |
| BseSI | GKGCMC | 3 cut(s) | 341, 1124, 1908 |
| BseXI | GCAGC | 8 cut(s) | 296, 1090, 1639, 1999, 2171, 2174, 2224, 2864 |
| BsgI | GTGCAG | 2 cut(s) | 148, 2013 |
| BshNI | GGYRCC | 2 cut(s) | 1905, 3387 |
| BsiHKAI | GWGCWC | 4 cut(s) | 180, 1124, 3134, 3283 |
| BsiSI | CCGG | 4 cut(s) | 1909, 1991, 2475, 3054 |
| BslFI | GGGAC | 3 cut(s) | 707, 1565, 2615 |
| BsmAI | GTCTC | 3 cut(s) | 522, 600, 1150 |
| BsmFI | GGGAC | 3 cut(s) | 707, 1565, 2615 |
| BsmI | GAATGC | 5 cut(s) | 878, 942, 1441, 2067, 2535 |
| Bsp119I | TTCGAA | 1 cut(s) | 3548 |
| Bsp120I | GGGCCC | 1 cut(s) | 337 |
| Bsp1286I | GDGCHC | 6 cut(s) | 180, 341, 1124, 1908, 3134, 3283 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2145, 2241 |
| Bsp19I | CCATGG | 1 cut(s) | 855 |
| BspACI | CCGC | 4 cut(s) | 661, 883, 3259, 3523 |
| BspMI | ACCTGC | 1 cut(s) | 120 |
| BspPI | GGATC | 9 cut(s) | 485, 498, 743, 944, 1202, 1215, 1823, 2669, 3084 |
| BspQI | GCTCTTC | 1 cut(s) | 2645 |
| BspT104I | TTCGAA | 1 cut(s) | 3548 |
| BspT107I | GGYRCC | 2 cut(s) | 1905, 3387 |
| BsrBI | CCGCTC | 1 cut(s) | 3259 |
| BsrDI | GCAATG | 3 cut(s) | 531, 1800, 2782 |
| BsrFI | RCCGGY | 1 cut(s) | 1908 |
| BsrI | ACTGG | 7 cut(s) | 1045, 1965, 2037, 2137, 2338, 2884, 3205 |
| BssAI | RCCGGY | 1 cut(s) | 1908 |
| BssECI | CCNNGG | 5 cut(s) | 678, 752, 765, 855, 2546 |
| BssNAI | GTATAC | 2 cut(s) | 2231, 3359 |
| BssNI | GRCGYC | 1 cut(s) | 2701 |
| BssT1I | CCWWGG | 3 cut(s) | 678, 752, 855 |
| Bst1107I | GTATAC | 2 cut(s) | 2231, 3359 |
| Bst2UI | CCWGG | 5 cut(s) | 1564, 3090, 3146, 3392, 3481 |
| Bst4CI | ACNGT | 8 cut(s) | 31, 1058, 1556, 2025, 2801, 2890, 3278, 3363 |
| Bst6I | CTCTTC | 4 cut(s) | 842, 2645, 3183, 3347 |
| BstACI | GRCGYC | 1 cut(s) | 2701 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2504 |
| BstBI | TTCGAA | 1 cut(s) | 3548 |
| BstC8I | GCNNGC | 6 cut(s) | 79, 564, 666, 942, 1861, 2901 |
| BstDSI | CCRYGG | 2 cut(s) | 765, 855 |
| BstEII | GGTNACC | 1 cut(s) | 1348 |
| BstH2I | RGCGCY | 2 cut(s) | 386, 3523 |
| BstHHI | GCGC | 3 cut(s) | 385, 2144, 3522 |
| BstMAI | GTCTC | 3 cut(s) | 522, 600, 1150 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 281, 1649, 2504, 2849, 2858, 2900, 3256, 3265 |
| BstNI | CCWGG | 5 cut(s) | 1564, 3090, 3146, 3392, 3481 |
| BstNSI | RCATGY | 6 cut(s) | 71, 510, 566, 2221, 2786, 3209 |
| BstPI | GGTNACC | 1 cut(s) | 1348 |
| BstSCI | CCNGG | 8 cut(s) | 1562, 1990, 2473, 3052, 3088, 3144, 3390, 3479 |
| BstSFI | CTRYAG | 3 cut(s) | 808, 2369, 3274 |
| BstSLI | GKGCMC | 3 cut(s) | 341, 1124, 1908 |
| BstV1I | GCAGC | 8 cut(s) | 296, 1090, 1639, 1999, 2171, 2174, 2224, 2864 |
| BstV2I | GAAGAC | 3 cut(s) | 1268, 1457, 1481 |
| BstX2I | RGATCY | 6 cut(s) | 490, 949, 1207, 1828, 2629, 3076 |
| BstYI | RGATCY | 6 cut(s) | 490, 949, 1207, 1828, 2629, 3076 |
| BstZ17I | GTATAC | 2 cut(s) | 2231, 3359 |
| Bsu36I | CCTNAGG | 2 cut(s) | 909, 2255 |
| BtgI | CCRYGG | 2 cut(s) | 765, 855 |
| BtgZI | GCGATG | 1 cut(s) | 3479 |
| BtsIMutI | CAGTG | 6 cut(s) | 36, 2030, 2130, 2345, 3096, 3283 |
| BveI | ACCTGC | 1 cut(s) | 120 |
| Cac8I | GCNNGC | 6 cut(s) | 79, 564, 666, 942, 1861, 2901 |
| CaiI | CAGNNNCTG | 1 cut(s) | 638 |
| CfoI | GCGC | 3 cut(s) | 385, 2144, 3522 |
| Cfr10I | RCCGGY | 1 cut(s) | 1908 |
| CseI | GACGC | 1 cut(s) | 2690 |
| CsiI | ACCWGGT | 1 cut(s) | 3390 |
| Csp6I | GTAC | 8 cut(s) | 94, 1516, 2324, 2923, 2950, 2959, 3388, 3574 |
| CviQI | GTAC | 8 cut(s) | 94, 1516, 2324, 2923, 2950, 2959, 3388, 3574 |
| DraI | TTTAAA | 1 cut(s) | 547 |
| DraIII | CACNNNGTG | 1 cut(s) | 1838 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 719, 2962 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 719, 2962 |
| EaeI | YGGCCR | 2 cut(s) | 1886, 3142 |
| Eam1104I | CTCTTC | 4 cut(s) | 842, 2645, 3183, 3347 |
| EarI | CTCTTC | 4 cut(s) | 842, 2645, 3183, 3347 |
| Ecl136II | GAGCTC | 1 cut(s) | 178 |
| Eco130I | CCWWGG | 3 cut(s) | 678, 752, 855 |
| Eco147I | AGGCCT | 2 cut(s) | 904, 1924 |
| Eco24I | GRGCYC | 2 cut(s) | 180, 341 |
| Eco32I | GATATC | 1 cut(s) | 1735 |
| Eco47I | GGWCC | 5 cut(s) | 147, 852, 1552, 2602, 3213 |
| Eco53kI | GAGCTC | 1 cut(s) | 178 |
| Eco57I | CTGAAG | 5 cut(s) | 30, 930, 1205, 1254, 3272 |
| Eco81I | CCTNAGG | 2 cut(s) | 909, 2255 |
| Eco91I | GGTNACC | 1 cut(s) | 1348 |
| EcoICRI | GAGCTC | 1 cut(s) | 178 |
| EcoO109I | RGGNCCY | 4 cut(s) | 338, 2251, 2562, 2602 |
| EcoO65I | GGTNACC | 1 cut(s) | 1348 |
| EcoRI | GAATTC | 1 cut(s) | 3293 |
| EcoRII | CCWGG | 5 cut(s) | 1562, 3088, 3144, 3390, 3479 |
| EcoRV | GATATC | 1 cut(s) | 1735 |
| EcoT14I | CCWWGG | 3 cut(s) | 678, 752, 855 |
| EcoT22I | ATGCAT | 2 cut(s) | 238, 1690 |
| EcoT38I | GRGCYC | 2 cut(s) | 180, 341 |
| ErhI | CCWWGG | 3 cut(s) | 678, 752, 855 |
| FaqI | GGGAC | 3 cut(s) | 707, 1565, 2615 |
| FauI | CCCGC | 1 cut(s) | 876 |
| FauNDI | CATATG | 2 cut(s) | 1684, 3067 |
| FblI | GTMKAC | 6 cut(s) | 64, 1679, 1695, 2230, 2357, 3358 |
| FriOI | GRGCYC | 2 cut(s) | 180, 341 |
| GlaI | GCGC | 3 cut(s) | 384, 2143, 3521 |
| GsuI | CTGGAG | 3 cut(s) | 2077, 3101, 3111 |
| HaeII | RGCGCY | 2 cut(s) | 386, 3523 |
| HapII | CCGG | 4 cut(s) | 1909, 1991, 2475, 3054 |
| HgaI | GACGC | 1 cut(s) | 2690 |
| HhaI | GCGC | 3 cut(s) | 385, 2144, 3522 |
| Hin1I | GRCGYC | 1 cut(s) | 2701 |
| Hin6I | GCGC | 3 cut(s) | 383, 2142, 3520 |
| HinP1I | GCGC | 3 cut(s) | 383, 2142, 3520 |
| HincII | GTYRAC | 3 cut(s) | 478, 2223, 2967 |
| HindII | GTYRAC | 3 cut(s) | 478, 2223, 2967 |
| HindIII | AAGCTT | 2 cut(s) | 1196, 2577 |
| HpaI | GTTAAC | 1 cut(s) | 2223 |
| HpaII | CCGG | 4 cut(s) | 1909, 1991, 2475, 3054 |
| Hpy99I | CGWCG | 1 cut(s) | 2368 |
| HpyCH4III | ACNGT | 8 cut(s) | 31, 1058, 1556, 2025, 2801, 2890, 3278, 3363 |
| HpyCH4IV | ACGT | 3 cut(s) | 92, 1698, 2957 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 281, 1649, 2504, 2849, 2858, 2900, 3256, 3265 |
| HpySE526I | ACGT | 3 cut(s) | 92, 1698, 2957 |
| Hsp92I | GRCGYC | 1 cut(s) | 2701 |
| HspAI | GCGC | 3 cut(s) | 383, 2142, 3520 |
| KpnI | GGTACC | 1 cut(s) | 3391 |
| KspAI | GTTAAC | 1 cut(s) | 2223 |
| LguI | GCTCTTC | 1 cut(s) | 2645 |
| LmnI | GCTCC | 6 cut(s) | 226, 1077, 1414, 3037, 3092, 3256 |
| Lsp1109I | GCAGC | 8 cut(s) | 296, 1090, 1639, 1999, 2171, 2174, 2224, 2864 |
| LweI | GCATC | 8 cut(s) | 271, 1135, 1697, 2085, 2494, 2995, 3103, 3386 |
| MabI | ACCWGGT | 1 cut(s) | 3390 |
| MaeII | ACGT | 3 cut(s) | 92, 1698, 2957 |
| MbiI | CCGCTC | 1 cut(s) | 3259 |
| MfeI | CAATTG | 1 cut(s) | 1544 |
| MflI | RGATCY | 6 cut(s) | 490, 949, 1207, 1828, 2629, 3076 |
| MhlI | GDGCHC | 6 cut(s) | 180, 341, 1124, 1908, 3134, 3283 |
| MlsI | TGGCCA | 2 cut(s) | 1888, 3144 |
| MluNI | TGGCCA | 2 cut(s) | 1888, 3144 |
| MlyI | GAGTC | 3 cut(s) | 167, 1952, 2653 |
| MmeI | TCCRAC | 3 cut(s) | 717, 1032, 3252 |
| Mox20I | TGGCCA | 2 cut(s) | 1888, 3144 |
| Mph1103I | ATGCAT | 2 cut(s) | 238, 1690 |
| MscI | TGGCCA | 2 cut(s) | 1888, 3144 |
| MslI | CAYNNNNRTG | 4 cut(s) | 2111, 2526, 2571, 3382 |
| Msp20I | TGGCCA | 2 cut(s) | 1888, 3144 |
| MspI | CCGG | 4 cut(s) | 1909, 1991, 2475, 3054 |
| MspR9I | CCNGG | 8 cut(s) | 1564, 1992, 2475, 3054, 3090, 3146, 3392, 3481 |
| MunI | CAATTG | 1 cut(s) | 1544 |
| Mva1269I | GAATGC | 5 cut(s) | 878, 942, 1441, 2067, 2535 |
| MvaI | CCWGG | 5 cut(s) | 1564, 3090, 3146, 3392, 3481 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 281, 1649, 2504, 2849, 2858, 2900, 3256, 3265 |
| NciI | CCSGG | 3 cut(s) | 1992, 2475, 3054 |
| NcoI | CCATGG | 1 cut(s) | 855 |
| NdeI | CATATG | 2 cut(s) | 1684, 3067 |
| NmuCI | GTSAC | 3 cut(s) | 2588, 3056, 3394 |
| NsiI | ATGCAT | 2 cut(s) | 238, 1690 |
| NspI | RCATGY | 6 cut(s) | 71, 510, 566, 2221, 2786, 3209 |
| NspV | TTCGAA | 1 cut(s) | 3548 |
| OliI | CACNNNNGTG | 1 cut(s) | 2111 |
| PaeI | GCATGC | 1 cut(s) | 566 |
| PceI | AGGCCT | 2 cut(s) | 904, 1924 |
| PciI | ACATGT | 2 cut(s) | 67, 2782 |
| PciSI | GCTCTTC | 1 cut(s) | 2645 |
| PctI | GAATGC | 5 cut(s) | 878, 942, 1441, 2067, 2535 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1895 |
| PfoI | TCCNGGA | 2 cut(s) | 2473, 3088 |
| PleI | GAGTC | 3 cut(s) | 166, 1951, 2653 |
| PpsI | GAGTC | 3 cut(s) | 166, 1951, 2653 |
| PpuMI | RGGWCCY | 1 cut(s) | 2602 |
| PscI | ACATGT | 2 cut(s) | 67, 2782 |
| PsiI | TTATAA | 2 cut(s) | 972, 2726 |
| Psp124BI | GAGCTC | 1 cut(s) | 180 |
| Psp5II | RGGWCCY | 1 cut(s) | 2602 |
| Psp6I | CCWGG | 5 cut(s) | 1562, 3088, 3144, 3390, 3479 |
| PspEI | GGTNACC | 1 cut(s) | 1348 |
| PspGI | CCWGG | 5 cut(s) | 1562, 3088, 3144, 3390, 3479 |
| PspOMI | GGGCCC | 1 cut(s) | 337 |
| PspPPI | RGGWCCY | 1 cut(s) | 2602 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2193, 2225 |
| PstNI | CAGNNNCTG | 1 cut(s) | 638 |
| PsuI | RGATCY | 6 cut(s) | 490, 949, 1207, 1828, 2629, 3076 |
| RsaI | GTAC | 8 cut(s) | 95, 1517, 2325, 2924, 2951, 2960, 3389, 3575 |
| RsaNI | GTAC | 8 cut(s) | 94, 1516, 2324, 2923, 2950, 2959, 3388, 3574 |
| RseI | CAYNNNNRTG | 4 cut(s) | 2111, 2526, 2571, 3382 |
| SacI | GAGCTC | 1 cut(s) | 180 |
| SapI | GCTCTTC | 1 cut(s) | 2645 |
| ScaI | AGTACT | 1 cut(s) | 1517 |
| SchI | GAGTC | 3 cut(s) | 167, 1952, 2653 |
| ScrFI | CCNGG | 8 cut(s) | 1564, 1992, 2475, 3054, 3090, 3146, 3392, 3481 |
| SduI | GDGCHC | 6 cut(s) | 180, 341, 1124, 1908, 3134, 3283 |
| SexAI | ACCWGGT | 1 cut(s) | 3390 |
| SfaNI | GCATC | 8 cut(s) | 271, 1135, 1697, 2085, 2494, 2995, 3103, 3386 |
| SfcI | CTRYAG | 3 cut(s) | 808, 2369, 3274 |
| SfuI | TTCGAA | 1 cut(s) | 3548 |
| SinI | GGWCC | 5 cut(s) | 147, 852, 1552, 2602, 3213 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 2111, 2526, 2571, 3382 |
| SmlI | CTYRAG | 4 cut(s) | 153, 1342, 2327, 2679 |
| SmoI | CTYRAG | 4 cut(s) | 153, 1342, 2327, 2679 |
| SphI | GCATGC | 1 cut(s) | 566 |
| SseBI | AGGCCT | 2 cut(s) | 904, 1924 |
| SsiI | CCGC | 4 cut(s) | 661, 883, 3259, 3523 |
| SspI | AATATT | 3 cut(s) | 196, 1639, 3328 |
| SstI | GAGCTC | 1 cut(s) | 180 |
| StuI | AGGCCT | 2 cut(s) | 904, 1924 |
| StyD4I | CCNGG | 8 cut(s) | 1562, 1990, 2473, 3052, 3088, 3144, 3390, 3479 |
| StyI | CCWWGG | 3 cut(s) | 678, 752, 855 |
| TaaI | ACNGT | 8 cut(s) | 31, 1058, 1556, 2025, 2801, 2890, 3278, 3363 |
| TaiI | ACGT | 3 cut(s) | 95, 1701, 2960 |
| TaqI | TCGA | 5 cut(s) | 411, 868, 2595, 3548, 3586 |
| TatI | WGTACW | 1 cut(s) | 1515 |
| TauI | GCSGC | 2 cut(s) | 664, 3525 |
| TscAI | CASTG | 6 cut(s) | 36, 2037, 2137, 2345, 3103, 3283 |
| TseFI | GTSAC | 3 cut(s) | 2588, 3056, 3394 |
| TseI | GCWGC | 8 cut(s) | 284, 1103, 1652, 1987, 2159, 2162, 2237, 2852 |
| Tsp45I | GTSAC | 3 cut(s) | 2588, 3056, 3394 |
| TspGWI | ACGGA | 3 cut(s) | 782, 2123, 2732 |
| TspRI | CASTG | 6 cut(s) | 36, 2037, 2137, 2345, 3103, 3283 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1895 |
| VneI | GTGCAC | 1 cut(s) | 1120 |
| VpaK11BI | GGWCC | 5 cut(s) | 147, 852, 1552, 2602, 3213 |
| XapI | RAATTY | 7 cut(s) | 169, 512, 1139, 1965, 2728, 2973, 3293 |
| XbaI | TCTAGA | 1 cut(s) | 2308 |
| XceI | RCATGY | 6 cut(s) | 71, 510, 566, 2221, 2786, 3209 |
| XmiI | GTMKAC | 6 cut(s) | 64, 1679, 1695, 2230, 2357, 3358 |
| ZrmI | AGTACT | 1 cut(s) | 1517 |
| Zsp2I | ATGCAT | 2 cut(s) | 238, 1690 |