Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49500 AT3G49500 AT3G49500 AT3G49500 AT3G49500 |
| fragaria_vesca | FvH4_2g29170 FvH4_2g29170 |
| malus_domestica | MD15G1124800.v1.1 |
| prunus_persica | Prupe.1G480300_v2.0.a1 Prupe.1G480300_v2.0.a1 |
| pyrus_communis | pycom15g11240 |
| rosa_chinensis | RchiOBHm_Chr4g0412141 |
| rosa_laevigata | RLG00000008315 |
| rosa_multiflora | Rmu_co8504827.1_g000001 Rmu_sc0004221.1_g000009 |
| rosa_roxburghii | Rroxscaffold_5G00356410 |
| rosa_rugosa | Rorug04G0105800 |
| rosa_samantha | Rh4AG171600 Rh4BG170800 Rh4CG182500 Rh4DG166000 |
| rosa_wichuraiana | Rw0G000010 Rw4G014320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 48 |
| AciI | CCGC | 2 cut(s) | 48, 218 |
| AclWI | GGATC | 1 cut(s) | 161 |
| AcsI | RAATTY | 1 cut(s) | 176 |
| AgsI | TTSAA | 1 cut(s) | 197 |
| AluBI | AGCT | 2 cut(s) | 30, 189 |
| AluI | AGCT | 2 cut(s) | 30, 189 |
| Alw21I | GWGCWC | 2 cut(s) | 32, 85 |
| AlwI | GGATC | 1 cut(s) | 161 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 189 |
| AoxI | GGCC | 1 cut(s) | 75 |
| ApeKI | GCWGC | 3 cut(s) | 183, 186, 189 |
| ApoI | RAATTY | 1 cut(s) | 176 |
| AspS9I | GGNCC | 1 cut(s) | 230 |
| AsuHPI | GGTGA | 1 cut(s) | 4 |
| AvaII | GGWCC | 1 cut(s) | 230 |
| BanII | GRGCYC | 1 cut(s) | 32 |
| Bbv12I | GWGCWC | 2 cut(s) | 32, 85 |
| BbvI | GCAGC | 3 cut(s) | 176, 195, 198 |
| BfaI | CTAG | 1 cut(s) | 147 |
| BfmI | CTRYAG | 1 cut(s) | 99 |
| BisI | GCNGC | 3 cut(s) | 184, 187, 190 |
| BlsI | GCNGC | 3 cut(s) | 185, 188, 191 |
| Bme18I | GGWCC | 1 cut(s) | 230 |
| BmgT120I | GGNCC | 1 cut(s) | 230 |
| BmiI | GGNNCC | 1 cut(s) | 144 |
| Bpu10I | CCTNAGC | 1 cut(s) | 31 |
| BpuEI | CTTGAG | 1 cut(s) | 92 |
| BsaJI | CCNNGG | 1 cut(s) | 171 |
| Bse3DI | GCAATG | 1 cut(s) | 126 |
| BseDI | CCNNGG | 1 cut(s) | 171 |
| BseMI | GCAATG | 1 cut(s) | 126 |
| BseMII | CTCAG | 1 cut(s) | 45 |
| BseRI | GAGGAG | 1 cut(s) | 51 |
| BseXI | GCAGC | 3 cut(s) | 176, 195, 198 |
| BshFI | GGCC | 1 cut(s) | 77 |
| BsiHKAI | GWGCWC | 2 cut(s) | 32, 85 |
| BsmI | GAATGC | 1 cut(s) | 210 |
| BsnI | GGCC | 1 cut(s) | 77 |
| Bsp1286I | GDGCHC | 2 cut(s) | 32, 85 |
| Bsp143I | GATC | 1 cut(s) | 166 |
| BspACI | CCGC | 2 cut(s) | 48, 218 |
| BspANI | GGCC | 1 cut(s) | 77 |
| BspCNI | CTCAG | 1 cut(s) | 44 |
| BspLI | GGNNCC | 1 cut(s) | 144 |
| BspPI | GGATC | 1 cut(s) | 161 |
| BsrBI | CCGCTC | 1 cut(s) | 48 |
| BsrDI | GCAATG | 1 cut(s) | 126 |
| BssECI | CCNNGG | 1 cut(s) | 171 |
| BssMI | GATC | 1 cut(s) | 166 |
| BssT1I | CCWWGG | 1 cut(s) | 171 |
| Bst4CI | ACNGT | 2 cut(s) | 103, 227 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 189 |
| BstC8I | GCNNGC | 1 cut(s) | 208 |
| BstDEI | CTNAG | 1 cut(s) | 31 |
| BstKTI | GATC | 1 cut(s) | 169 |
| BstMBI | GATC | 1 cut(s) | 166 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 189 |
| BstSFI | CTRYAG | 1 cut(s) | 99 |
| BstV1I | GCAGC | 3 cut(s) | 176, 195, 198 |
| BsuRI | GGCC | 1 cut(s) | 77 |
| BtsIMutI | CAGTG | 1 cut(s) | 235 |
| Cac8I | GCNNGC | 1 cut(s) | 208 |
| CaiI | CAGNNNCTG | 1 cut(s) | 189 |
| Cfr13I | GGNCC | 1 cut(s) | 230 |
| CviJI | RGCY | 4 cut(s) | 30, 77, 145, 189 |
| CviKI_1 | RGCY | 4 cut(s) | 30, 77, 145, 189 |
| DdeI | CTNAG | 1 cut(s) | 31 |
| DpnI | GATC | 1 cut(s) | 168 |
| DpnII | GATC | 1 cut(s) | 166 |
| Ecl136II | GAGCTC | 1 cut(s) | 30 |
| Eco130I | CCWWGG | 1 cut(s) | 171 |
| Eco147I | AGGCCT | 1 cut(s) | 77 |
| Eco24I | GRGCYC | 1 cut(s) | 32 |
| Eco47I | GGWCC | 1 cut(s) | 230 |
| Eco53kI | GAGCTC | 1 cut(s) | 30 |
| EcoICRI | GAGCTC | 1 cut(s) | 30 |
| EcoT14I | CCWWGG | 1 cut(s) | 171 |
| EcoT38I | GRGCYC | 1 cut(s) | 32 |
| ErhI | CCWWGG | 1 cut(s) | 171 |
| FaiI | YATR | 1 cut(s) | 94 |
| FauI | CCCGC | 1 cut(s) | 41 |
| Fnu4HI | GCNGC | 3 cut(s) | 184, 187, 190 |
| FriOI | GRGCYC | 1 cut(s) | 32 |
| Fsp4HI | GCNGC | 3 cut(s) | 184, 187, 190 |
| FspBI | CTAG | 1 cut(s) | 147 |
| GluI | GCNGC | 3 cut(s) | 184, 187, 190 |
| HaeIII | GGCC | 1 cut(s) | 77 |
| HincII | GTYRAC | 2 cut(s) | 124, 223 |
| HindII | GTYRAC | 2 cut(s) | 124, 223 |
| HphI | GGTGA | 1 cut(s) | 4 |
| Hpy166II | GTNNAC | 2 cut(s) | 124, 223 |
| Hpy188III | TCNNGA | 2 cut(s) | 25, 33 |
| Hpy8I | GTNNAC | 2 cut(s) | 124, 223 |
| HpyAV | CCTTC | 3 cut(s) | 25, 96, 132 |
| HpyCH4III | ACNGT | 2 cut(s) | 103, 227 |
| HpyCH4V | TGCA | 2 cut(s) | 131, 206 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 189 |
| HpyF3I | CTNAG | 1 cut(s) | 31 |
| Kzo9I | GATC | 1 cut(s) | 166 |
| LmnI | GCTCC | 3 cut(s) | 45, 88, 142 |
| LpnPI | CCDG | 3 cut(s) | 18, 91, 200 |
| Lsp1109I | GCAGC | 3 cut(s) | 176, 195, 198 |
| MaeI | CTAG | 1 cut(s) | 147 |
| MalI | GATC | 1 cut(s) | 168 |
| MbiI | CCGCTC | 1 cut(s) | 48 |
| MboI | GATC | 1 cut(s) | 166 |
| MboII | GAAGA | 1 cut(s) | 81 |
| MhlI | GDGCHC | 2 cut(s) | 32, 85 |
| MluCI | AATT | 1 cut(s) | 176 |
| MmeI | TCCRAC | 1 cut(s) | 115 |
| MnlI | CCTC | 3 cut(s) | 29, 55, 67 |
| MspA1I | CMGCKG | 1 cut(s) | 189 |
| Mva1269I | GAATGC | 1 cut(s) | 210 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 189 |
| NdeII | GATC | 1 cut(s) | 166 |
| NlaIV | GGNNCC | 1 cut(s) | 144 |
| PceI | AGGCCT | 1 cut(s) | 77 |
| PctI | GAATGC | 1 cut(s) | 210 |
| PkrI | GCNGC | 3 cut(s) | 185, 188, 191 |
| Psp124BI | GAGCTC | 1 cut(s) | 32 |
| PspN4I | GGNNCC | 1 cut(s) | 144 |
| PspPI | GGNCC | 1 cut(s) | 230 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 142, 174 |
| PstNI | CAGNNNCTG | 1 cut(s) | 189 |
| PvuII | CAGCTG | 1 cut(s) | 189 |
| SacI | GAGCTC | 1 cut(s) | 32 |
| SatI | GCNGC | 3 cut(s) | 184, 187, 190 |
| Sau3AI | GATC | 1 cut(s) | 166 |
| Sau96I | GGNCC | 1 cut(s) | 230 |
| SduI | GDGCHC | 2 cut(s) | 32, 85 |
| SetI | ASST | 4 cut(s) | 17, 32, 72, 191 |
| SfcI | CTRYAG | 1 cut(s) | 99 |
| SinI | GGWCC | 1 cut(s) | 230 |
| SmlI | CTYRAG | 1 cut(s) | 71 |
| SmoI | CTYRAG | 1 cut(s) | 71 |
| Sse9I | AATT | 1 cut(s) | 176 |
| SseBI | AGGCCT | 1 cut(s) | 77 |
| SsiI | CCGC | 2 cut(s) | 48, 218 |
| SspMI | CTAG | 1 cut(s) | 147 |
| SstI | GAGCTC | 1 cut(s) | 32 |
| StuI | AGGCCT | 1 cut(s) | 77 |
| StyI | CCWWGG | 1 cut(s) | 171 |
| TaaI | ACNGT | 2 cut(s) | 103, 227 |
| TasI | AATT | 1 cut(s) | 176 |
| TseI | GCWGC | 3 cut(s) | 183, 186, 189 |
| TspDTI | ATGAA | 2 cut(s) | 7, 81 |
| VpaK11BI | GGWCC | 1 cut(s) | 230 |
| XapI | RAATTY | 1 cut(s) | 176 |
| XspI | CTAG | 1 cut(s) | 147 |