Prupe.1G567500_v2.0.a1

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013457
Physical Location & Seq
Forward (+)
46300267 .. 46301834
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G567500.2

Sequence Viewer

Length: 870 bp
ATGTCACTGCAGGCTCATCGTCCTCGTGTTATCGTCAACGGAATAAGACGAATGAGAACCTTCCGTTACTTTTGGTGCCAACATTGCCAACGTACTATAAGGATTGCGTCTTCCAACCCATATGCAATTCTATGCCCATTTTGCTCAACTGAGTTCAATCATGAGCTTGATATTCTAAGCCCTAGGCTTGTCAATGACCACCTTACATTGTCCCCAGCTGCCCAGTTATTGCAAACCTTGTCGCTCATCCTCGATCCAATGCACCGAAGAGCTCGAGAGCAAACAGAAAACGAAGATCATGGACGGTCTTGGATCACCCTCCAATTTGATAGACCACCTCGCTCATCGCCAAGACAAATTGTTCCCCCTCTGGTTCCTCTAGCAAATAATAGCGAAGATGTGGTAAATGATGTCACTGGGGGCACCTGGACGGTTGAAAATGACTGCCCAGGTCCCCCTCCAGCACCTGCTTCAGCCATTCAGGCTTTGCCCTTGGTGAAAGTCACGGAAGGGCAGATGAGGAACGAACCCACTTGCCCCGTGTGCAAGGAAGTGTTCGCGGTTGGTGGGGAAGTGAGGGAGATGCCATGCAAGCATCTCTACCATTCTGATTGCATACTCCCATGGCTTCACATACACAATACTTGTCCAGTTTGCCGCTATGAGCTGCCAGAAGAAGGCACTTCTTGTGACAACAATAACAATGAGTTTGAGGAATATAGTGATGAAAATAATCTCGTAGAAAGCATAAAATGGTGGTGGAAGCAATTCCTATGCTTGTGGCCATTTCGCGCATTGGATAATTGGAGGCAACGTTACCTTGATAACCAACAAGACAGAACCTGGTGGACCTCTTGGATCTTTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

290

Amino Acids

33.75

Weight (kDa)

5.93

Isoelectric Point (pI)

58.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68180
fragaria_vesca FvH4_5g29600 FvH4_5g29600
malus_domestica MD08G1228300.v1.1 MD15G1422200.v1.1
prunus_persica Prupe.1G567500_v2.0.a1 Prupe.1G567500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0222631
rosa_laevigata RLG00000002042
rosa_multiflora Rmu_sc0001498.1_g000010
rosa_roxburghii Rroxscaffold_3G00236580
rosa_rugosa Rorug07G0211600
rosa_samantha Rh7AG355200 Rh7BG343500 Rh7CG372500 Rh7DG349700
rosa_wichuraiana Rw7G029810 Rw7G030160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 475
Acc36I ACCTGC 1 cut(s) 475
AccB1I GGYRCC 2 cut(s) 75, 422
AccII CGCG 2 cut(s) 560, 792
AciI CCGC 2 cut(s) 560, 658
AclI AACGTT 1 cut(s) 814
AclWI GGATC 3 cut(s) 248, 320, 866
AcoI YGGCCR 1 cut(s) 782
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 677
AgsI TTSAA 2 cut(s) 157, 437
AjnI CCWGG 3 cut(s) 425, 448, 842
AluBI AGCT 4 cut(s) 166, 218, 272, 667
AluI AGCT 4 cut(s) 166, 218, 272, 667
Alw21I GWGCWC 1 cut(s) 274
AlwI GGATC 3 cut(s) 248, 320, 866
AlwNI CAGNNNCTG 2 cut(s) 467, 843
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 1 cut(s) 782
ApeKI GCWGC 2 cut(s) 218, 667
Asp700I GAANNNNTTC 1 cut(s) 767
AspA2I CCTAGG 1 cut(s) 182
AspLEI GCGC 1 cut(s) 794
AspS9I GGNCC 2 cut(s) 452, 849
AsuHPI GGTGA 2 cut(s) 307, 508
AvaI CYCGRG 1 cut(s) 273
AvaII GGWCC 2 cut(s) 452, 849
AvrII CCTAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 425
BalI TGGCCA 1 cut(s) 784
BanI GGYRCC 2 cut(s) 75, 422
BanII GRGCYC 1 cut(s) 274
BauI CACGAG 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 2 cut(s) 205, 654
BcgI CGANNNNNNTGC 1 cut(s) 33
BciT130I CCWGG 3 cut(s) 427, 450, 844
BfaI CTAG 2 cut(s) 183, 380
BfmI CTRYAG 2 cut(s) 8, 866
BfuAI ACCTGC 1 cut(s) 475
BglI GCCNNNNNGGC 1 cut(s) 482
BisI GCNGC 3 cut(s) 219, 658, 668
BlnI CCTAGG 1 cut(s) 182
BlsI GCNGC 3 cut(s) 220, 659, 669
Bme1390I CCNGG 3 cut(s) 427, 450, 844
Bme18I GGWCC 2 cut(s) 452, 849
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 2 cut(s) 452, 849
BmiI GGNNCC 4 cut(s) 77, 375, 424, 454
BmrFI CCNGG 3 cut(s) 427, 450, 844
BmrI ACTGGG 2 cut(s) 217, 426
BmsI GCATC 2 cut(s) 573, 604
BmuI ACTGGG 2 cut(s) 217, 426
BpiI GAAGAC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 444
BsaJI CCNNGG 4 cut(s) 182, 448, 492, 623
BsaXI ACNNNNNCTCC 2 cut(s) 799, 829
Bsc4I CCNNNNNNNGG 1 cut(s) 677
Bse1I ACTGG 3 cut(s) 223, 421, 650
Bse3DI GCAATG 1 cut(s) 82
BseBI CCWGG 3 cut(s) 427, 450, 844
BseDI CCNNGG 4 cut(s) 182, 448, 492, 623
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 677
BseMI GCAATG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 3 cut(s) 223, 421, 650
BseSI GKGCMC 1 cut(s) 425
BseXI GCAGC 2 cut(s) 205, 654
BseYI CCCAGC 1 cut(s) 214
Bsh1236I CGCG 2 cut(s) 560, 792
BshFI GGCC 1 cut(s) 784
BshNI GGYRCC 2 cut(s) 75, 422
BsiHKAI GWGCWC 1 cut(s) 274
BsiHKCI CYCGRG 1 cut(s) 273
BslFI GGGAC 2 cut(s) 196, 438
BslI CCNNNNNNNGG 1 cut(s) 677
BsmFI GGGAC 2 cut(s) 196, 438
BsnI GGCC 1 cut(s) 784
BsoBI CYCGRG 1 cut(s) 273
Bsp1286I GDGCHC 2 cut(s) 274, 425
Bsp143I GATC 4 cut(s) 253, 295, 312, 858
Bsp19I CCATGG 1 cut(s) 623
BspACI CCGC 2 cut(s) 560, 658
BspANI GGCC 1 cut(s) 784
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 2 cut(s) 560, 792
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 4 cut(s) 77, 375, 424, 454
BspMAI CTGCAG 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 3 cut(s) 248, 320, 866
BspQI GCTCTTC 1 cut(s) 262
BspT107I GGYRCC 2 cut(s) 75, 422
BsrDI GCAATG 1 cut(s) 82
BsrI ACTGG 3 cut(s) 223, 421, 650
BssECI CCNNGG 4 cut(s) 182, 448, 492, 623
BssMI GATC 4 cut(s) 253, 295, 312, 858
BssSI CACGAG 1 cut(s) 24
BssT1I CCWWGG 3 cut(s) 182, 492, 623
Bst2BI CACGAG 1 cut(s) 24
Bst2UI CCWGG 3 cut(s) 427, 450, 844
Bst4CI ACNGT 2 cut(s) 306, 433
Bst6I CTCTTC 1 cut(s) 262
BstC8I GCNNGC 2 cut(s) 12, 593
BstDEI CTNAG 2 cut(s) 150, 176
BstDSI CCRYGG 1 cut(s) 623
BstF5I GGATG 1 cut(s) 246
BstFNI CGCG 2 cut(s) 560, 792
BstHHI GCGC 1 cut(s) 794
BstKTI GATC 4 cut(s) 256, 298, 315, 861
BstMBI GATC 4 cut(s) 253, 295, 312, 858
BstMWI GCNNNNNNNGC 5 cut(s) 84, 141, 482, 543, 592
BstNI CCWGG 3 cut(s) 427, 450, 844
BstSCI CCNGG 3 cut(s) 425, 448, 842
BstSFI CTRYAG 2 cut(s) 8, 866
BstSLI GKGCMC 1 cut(s) 425
BstUI CGCG 2 cut(s) 560, 792
BstV1I GCAGC 2 cut(s) 205, 654
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 858
BstYI RGATCY 1 cut(s) 858
BsuRI GGCC 1 cut(s) 784
BtgI CCRYGG 1 cut(s) 623
BtgZI GCGATG 1 cut(s) 330
BtsCI GGATG 1 cut(s) 246
BtsI GCAGTG 1 cut(s) 5
BtsIMutI CAGTG 2 cut(s) 5, 414
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 2 cut(s) 12, 593
CaiI CAGNNNCTG 2 cut(s) 467, 843
CciI TCATGA 1 cut(s) 160
CfoI GCGC 1 cut(s) 794
Cfr13I GGNCC 2 cut(s) 452, 849
CseI GACGC 1 cut(s) 96
CsiI ACCWGGT 1 cut(s) 842
Csp6I GTAC 1 cut(s) 93
CviAII CATG 4 cut(s) 161, 299, 588, 624
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 2 cut(s) 150, 176
DpnI GATC 4 cut(s) 255, 297, 314, 860
DpnII GATC 4 cut(s) 253, 295, 312, 858
EaeI YGGCCR 1 cut(s) 782
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Ecl136II GAGCTC 1 cut(s) 272
Eco130I CCWWGG 3 cut(s) 182, 492, 623
Eco24I GRGCYC 1 cut(s) 274
Eco47I GGWCC 2 cut(s) 452, 849
Eco53kI GAGCTC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 452
EcoRII CCWGG 3 cut(s) 425, 448, 842
EcoT14I CCWWGG 3 cut(s) 182, 492, 623
EcoT38I GRGCYC 1 cut(s) 274
ErhI CCWWGG 3 cut(s) 182, 492, 623
FaeI CATG 4 cut(s) 164, 302, 591, 627
FaqI GGGAC 2 cut(s) 196, 438
FatI CATG 4 cut(s) 160, 298, 587, 623
FauNDI CATATG 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 219, 658, 668
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 3 cut(s) 219, 658, 668
FspBI CTAG 2 cut(s) 183, 380
GlaI GCGC 1 cut(s) 793
GluI GCNGC 3 cut(s) 219, 658, 668
GsaI CCCAGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 1 cut(s) 784
HgaI GACGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 794
Hin1II CATG 4 cut(s) 164, 302, 591, 627
Hin6I GCGC 1 cut(s) 792
HinP1I GCGC 1 cut(s) 792
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HphI GGTGA 2 cut(s) 307, 508
Hpy166II GTNNAC 2 cut(s) 37, 849
Hpy188I TCNGA 1 cut(s) 610
Hpy188III TCNNGA 2 cut(s) 161, 275
Hpy8I GTNNAC 2 cut(s) 37, 849
HpyAV CCTTC 3 cut(s) 70, 503, 671
HpyCH4III ACNGT 2 cut(s) 306, 433
HpyCH4IV ACGT 2 cut(s) 91, 814
HpyCH4V TGCA 7 cut(s) 10, 125, 232, 262, 546, 591, 615
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 141, 482, 543, 592
HpyF3I CTNAG 2 cut(s) 150, 176
HpySE526I ACGT 2 cut(s) 91, 814
Hsp92II CATG 4 cut(s) 164, 302, 591, 627
HspAI GCGC 1 cut(s) 792
Kzo9I GATC 4 cut(s) 253, 295, 312, 858
LguI GCTCTTC 1 cut(s) 262
Lsp1109I GCAGC 2 cut(s) 205, 654
LweI GCATC 2 cut(s) 573, 604
MabI ACCWGGT 1 cut(s) 842
MaeI CTAG 2 cut(s) 183, 380
MaeII ACGT 2 cut(s) 91, 814
MaeIII GTNAC 6 cut(s) 3, 65, 412, 502, 689, 815
MalI GATC 4 cut(s) 255, 297, 314, 860
MboI GATC 4 cut(s) 253, 295, 312, 858
MboII GAAGA 5 cut(s) 102, 279, 305, 407, 686
MflI RGATCY 1 cut(s) 858
MhlI GDGCHC 2 cut(s) 274, 425
MlsI TGGCCA 1 cut(s) 784
MluCI AATT 5 cut(s) 126, 323, 357, 767, 802
MluNI TGGCCA 1 cut(s) 784
MmeI TCCRAC 1 cut(s) 138
Mox20I TGGCCA 1 cut(s) 784
MroXI GAANNNNTTC 1 cut(s) 767
MscI TGGCCA 1 cut(s) 784
Msp20I TGGCCA 1 cut(s) 784
MspA1I CMGCKG 1 cut(s) 218
MspR9I CCNGG 3 cut(s) 427, 450, 844
MvaI CCWGG 3 cut(s) 427, 450, 844
MvnI CGCG 2 cut(s) 560, 792
MwoI GCNNNNNNNGC 5 cut(s) 84, 141, 482, 543, 592
NcoI CCATGG 1 cut(s) 623
NdeI CATATG 1 cut(s) 121
NdeII GATC 4 cut(s) 253, 295, 312, 858
NlaIII CATG 4 cut(s) 164, 302, 591, 627
NlaIV GGNNCC 4 cut(s) 77, 375, 424, 454
NmuCI GTSAC 4 cut(s) 3, 412, 502, 689
PaeR7I CTCGAG 1 cut(s) 273
PagI TCATGA 1 cut(s) 160
PaqCI CACCTGC 1 cut(s) 475
PciSI GCTCTTC 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 767
PkrI GCNGC 3 cut(s) 220, 659, 669
PpuMI RGGWCCY 1 cut(s) 452
Psp124BI GAGCTC 1 cut(s) 274
Psp1406I AACGTT 1 cut(s) 814
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 3 cut(s) 425, 448, 842
PspFI CCCAGC 1 cut(s) 214
PspGI CCWGG 3 cut(s) 425, 448, 842
PspN4I GGNNCC 4 cut(s) 77, 375, 424, 454
PspPI GGNCC 2 cut(s) 452, 849
PspPPI RGGWCCY 1 cut(s) 452
PstI CTGCAG 1 cut(s) 12
PstNI CAGNNNCTG 2 cut(s) 467, 843
PsuI RGATCY 1 cut(s) 858
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SacI GAGCTC 1 cut(s) 274
SapI GCTCTTC 1 cut(s) 262
SatI GCNGC 3 cut(s) 219, 658, 668
Sau3AI GATC 4 cut(s) 253, 295, 312, 858
Sau96I GGNCC 2 cut(s) 452, 849
ScrFI CCNGG 3 cut(s) 427, 450, 844
SduI GDGCHC 2 cut(s) 274, 425
SexAI ACCWGGT 1 cut(s) 842
SfaNI GCATC 2 cut(s) 573, 604
SfcI CTRYAG 2 cut(s) 8, 866
Sfr274I CTCGAG 1 cut(s) 273
SinI GGWCC 2 cut(s) 452, 849
SlaI CTCGAG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 5 cut(s) 126, 323, 357, 767, 802
SsiI CCGC 2 cut(s) 560, 658
SspMI CTAG 2 cut(s) 183, 380
SstI GAGCTC 1 cut(s) 274
StyD4I CCNGG 3 cut(s) 425, 448, 842
StyI CCWWGG 3 cut(s) 182, 492, 623
TaaI ACNGT 2 cut(s) 306, 433
TaiI ACGT 2 cut(s) 94, 817
TaqI TCGA 2 cut(s) 252, 274
TasI AATT 5 cut(s) 126, 323, 357, 767, 802
TauI GCSGC 1 cut(s) 660
TscAI CASTG 2 cut(s) 12, 421
TseFI GTSAC 4 cut(s) 3, 412, 502, 689
TseI GCWGC 2 cut(s) 218, 667
Tsp45I GTSAC 4 cut(s) 3, 412, 502, 689
TspDTI ATGAA 1 cut(s) 741
TspGWI ACGGA 3 cut(s) 53, 54, 521
TspRI CASTG 2 cut(s) 12, 421
VpaK11BI GGWCC 2 cut(s) 452, 849
XhoI CTCGAG 1 cut(s) 273
XmaJI CCTAGG 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 767
XspI CTAG 2 cut(s) 183, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.