Rorug07G0211600

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001970
Physical Location & Seq
Forward (+)
18663920 .. 18665154
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0211600.1

Sequence Viewer

Length: 282 bp
ATGCACAGATCCGCGAGTGCTCCCCGAGTCTCCGGGGACTTCCCGGTCAACTCGTTATCAACTTCACCGCAGCAACAACAGCAATCTTCAACCACCGCGACCCACGACTCAGAGCACCACCACGATCAAGATCTTCCCACATACGATCCCCTCTCTCATGCCGCCAAGAGAGAACGGTCTCGCATCAGGTCCGCAGAGAACGCCATCCACTTAATACCTCTCGTCCTCGCTCTCTGTGCTATCATCCTCTGGTTCTTTTCCAATCCAGTTGTTGCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

93

Amino Acids

10.27

Weight (kDa)

6.63

Isoelectric Point (pI)

79.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
AccII CGCG 2 cut(s) 14, 98
AciI CCGC 5 cut(s) 12, 68, 96, 162, 192
AclWI GGATC 2 cut(s) 3, 140
AgsI TTSAA 1 cut(s) 90
Alw21I GWGCWC 2 cut(s) 22, 117
Alw26I GTCTC 2 cut(s) 34, 183
AlwI GGATC 2 cut(s) 3, 140
Ama87I CYCGRG 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 70, 275
AspS9I GGNCC 1 cut(s) 189
AsuC2I CCSGG 2 cut(s) 34, 44
AsuHPI GGTGA 1 cut(s) 57
AvaI CYCGRG 1 cut(s) 24
AvaII GGWCC 1 cut(s) 189
Bbv12I GWGCWC 2 cut(s) 22, 117
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 212
BcnI CCSGG 2 cut(s) 34, 44
BcoDI GTCTC 2 cut(s) 34, 183
BglII AGATCT 1 cut(s) 130
BisI GCNGC 3 cut(s) 71, 162, 276
BlsI GCNGC 3 cut(s) 72, 163, 277
Bme1390I CCNGG 2 cut(s) 34, 44
Bme18I GGWCC 1 cut(s) 189
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 189
BmrFI CCNGG 2 cut(s) 34, 44
BmsI GCATC 1 cut(s) 192
BpuMI CCSGG 2 cut(s) 34, 44
BsaBI GATNNNNATC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 266
Bse8I GATNNNNATC 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 2 cut(s) 204, 243
BseJI GATNNNNATC 1 cut(s) 129
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 266
BseXI GCAGC 1 cut(s) 82
Bsh1236I CGCG 2 cut(s) 14, 98
BsiHKAI GWGCWC 2 cut(s) 22, 117
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 2 cut(s) 33, 44
BslFI GGGAC 1 cut(s) 50
BsmAI GTCTC 2 cut(s) 34, 183
BsmFI GGGAC 1 cut(s) 50
Bso31I GGTCTC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 24
Bsp1286I GDGCHC 2 cut(s) 22, 117
Bsp143I GATC 4 cut(s) 8, 124, 130, 145
BspACI CCGC 5 cut(s) 12, 68, 96, 162, 192
BspCNI CTCAG 1 cut(s) 122
BspFNI CGCG 2 cut(s) 14, 98
BspPI GGATC 2 cut(s) 3, 140
BspTNI GGTCTC 1 cut(s) 183
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 4 cut(s) 8, 124, 130, 145
Bst4CI ACNGT 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 204, 243
BstFNI CGCG 2 cut(s) 14, 98
BstKTI GATC 4 cut(s) 11, 127, 133, 148
BstMAI GTCTC 2 cut(s) 34, 183
BstMBI GATC 4 cut(s) 8, 124, 130, 145
BstMWI GCNNNNNNNGC 3 cut(s) 79, 200, 236
BstSCI CCNGG 2 cut(s) 32, 42
BstUI CGCG 2 cut(s) 14, 98
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 2 cut(s) 8, 130
BstYI RGATCY 2 cut(s) 8, 130
BtsCI GGATG 2 cut(s) 204, 243
Cfr13I GGNCC 1 cut(s) 189
CviAII CATG 2 cut(s) 158, 279
DdeI CTNAG 1 cut(s) 109
DpnI GATC 4 cut(s) 10, 126, 132, 147
DpnII GATC 4 cut(s) 8, 124, 130, 145
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
Eco31I GGTCTC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 24
FaeI CATG 2 cut(s) 161, 282
FaiI YATR 3 cut(s) 142, 159, 280
FaqI GGGAC 1 cut(s) 50
FatI CATG 2 cut(s) 157, 278
Fnu4HI GCNGC 3 cut(s) 71, 162, 276
FokI GGATG 2 cut(s) 191, 230
Fsp4HI GCNGC 3 cut(s) 71, 162, 276
GluI GCNGC 3 cut(s) 71, 162, 276
HapII CCGG 2 cut(s) 33, 44
Hin1II CATG 2 cut(s) 161, 282
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 2 cut(s) 27, 107
HpaII CCGG 2 cut(s) 33, 44
HphI GGTGA 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4V TGCA 2 cut(s) 4, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 200, 236
HpyF3I CTNAG 1 cut(s) 109
Hsp92II CATG 2 cut(s) 161, 282
Kzo9I GATC 4 cut(s) 8, 124, 130, 145
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 4 cut(s) 46, 57, 172, 235
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 192
MalI GATC 4 cut(s) 10, 126, 132, 147
MboI GATC 4 cut(s) 8, 124, 130, 145
MboII GAAGA 2 cut(s) 78, 125
MflI RGATCY 2 cut(s) 8, 130
MhlI GDGCHC 2 cut(s) 22, 117
MlyI GAGTC 2 cut(s) 36, 101
MnlI CCTC 4 cut(s) 161, 228, 236, 257
MseI TTAA 1 cut(s) 212
MspI CCGG 2 cut(s) 33, 44
MspR9I CCNGG 2 cut(s) 34, 44
MvnI CGCG 2 cut(s) 14, 98
MwoI GCNNNNNNNGC 3 cut(s) 79, 200, 236
NciI CCSGG 2 cut(s) 34, 44
NdeII GATC 4 cut(s) 8, 124, 130, 145
NlaIII CATG 2 cut(s) 161, 282
PkrI GCNGC 3 cut(s) 72, 163, 277
PleI GAGTC 2 cut(s) 35, 101
PpsI GAGTC 2 cut(s) 35, 101
PspPI GGNCC 1 cut(s) 189
PsuI RGATCY 2 cut(s) 8, 130
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 3 cut(s) 71, 162, 276
Sau3AI GATC 4 cut(s) 8, 124, 130, 145
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 2 cut(s) 36, 101
ScrFI CCNGG 2 cut(s) 34, 44
SduI GDGCHC 2 cut(s) 22, 117
SetI ASST 2 cut(s) 191, 220
SfaNI GCATC 1 cut(s) 192
SinI GGWCC 1 cut(s) 189
SsiI CCGC 5 cut(s) 12, 68, 96, 162, 192
StyD4I CCNGG 2 cut(s) 32, 42
TaaI ACNGT 1 cut(s) 177
TauI GCSGC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TseI GCWGC 2 cut(s) 70, 275
VpaK11BI GGWCC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.