Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023945.1

Orthogroup ID

OG0001970

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2874

Gene Structure 2874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023945.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggcgaccaatatggtggtcgaggatacgagcttcgaggacgatcagctcgccgcgatgaccaccgacgacattgtcagagccacacgtcttctcgacaacgagatccgaattctcaaggaagaattgcaaagaacaaacttggagctggattcatacaaggagaagataaaggagaatcaggaaaagattaagctcaataagcagttgccctacttggtcggcaacattgttgagatattagaaatgaatccagaagatgaagctgaggaagatggggcaaacattgatcttgactcacaaagaaagggcaagtgtgttgttttgaaaacatctactcgtcagacaatctttctgcctgttgttgggcttgttgaccctgataaattaaagcctggagatcttgttggtgtgaacaaagatagttacctgatcttggatactctgccatccgagtatgattcccgagtgaaggctatggaggttgatgagaaaccaactgaagattacaatgatattggagggctagagaaacagattcaagaactggttgaggcaatagttttacccatgacccacaaggagcgttttcagaaattaggggttcgcccaccaaagggagtgcttttgtatggacctcctggaactggtaaaactttaatggcccgggcttgtgctgcacaaacgaatgccacttttctgaaacttgcaggcccacaactggttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

243

Amino Acids

27.2

Weight (kDa)

4.75

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05530
fragaria_vesca	FvH4_6g06600 FvH4_6g06600
prunus_persica	Prupe.6G320300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0110751 RchiOBHm_Chr3g0455801 RchiOBHm_Chr7g0231361 RchiOBHm_Chr7g0231371
rosa_laevigata	RLG00000002415 RLG00000011618 RLG00000019137 RLG00000025331
rosa_multiflora	Rmu_sc0001294.1_g000017 Rmu_sc0020335.1_g000004 Rmu_sc0023945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423470 Rroxscaffold_6G00423960
rosa_rugosa	Rorug03G0011200 Rorug03G0164200 Rorug03G0164300 Rorug03G0164300 Rorug03G0164300 Rorug05G0270100 Rorug07G0211600
rosa_samantha	Rh1AG219200 Rh1CG203300 Rh2CG295700 Rh2DG332600 Rh3AG069700 Rh3BG072300 Rh3CG070500 Rh3DG072900 Rh4AG071900 Rh4AG072700 Rh4AG075000 Rh4BG069800 Rh4CG078000 Rh7AG420300 Rh7CG440100
rosa_wichuraiana	Rw0G014490 Rw1G022930 Rw3G005640 Rw3G005990 Rw3G013020 Rw7G037120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccII	CGCG	1 cut(s)	56
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	522
AfiI	CCNNNNNNNGG	7 cut(s)	365, 436, 472, 616, 617, 647, 721
AflIII	ACRYGT	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	328, 542
AjiI	CACGTC	1 cut(s)	89
AjnI	CCWGG	2 cut(s)	394, 640
AluBI	AGCT	5 cut(s)	33, 49, 148, 196, 266
AluI	AGCT	5 cut(s)	33, 49, 148, 196, 266
AlwI	GGATC	1 cut(s)	100
Ama87I	CYCGRG	2 cut(s)	465, 666
AoxI	GGCC	2 cut(s)	663, 712
ApeKI	GCWGC	1 cut(s)	677
ApoI	RAATTY	1 cut(s)	111
AspS9I	GGNCC	3 cut(s)	635, 664, 713
AsuC2I	CCSGG	2 cut(s)	667, 668
AvaI	CYCGRG	2 cut(s)	465, 666
AvaII	GGWCC	1 cut(s)	635
BbsI	GAAGAC	1 cut(s)	83
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	664
BccI	CCATC	2 cut(s)	269, 457
BciT130I	CCWGG	2 cut(s)	396, 642
BciVI	GTATCC	2 cut(s)	19, 433
BcnI	CCSGG	2 cut(s)	667, 668
BfaI	CTAG	1 cut(s)	527
BfuI	GTATCC	2 cut(s)	19, 433
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	2 cut(s)	54, 678
BlsI	GCNGC	2 cut(s)	55, 679
Bme1390I	CCNGG	4 cut(s)	396, 642, 667, 668
Bme18I	GGWCC	1 cut(s)	635
BmeT110I	CYCGRG	2 cut(s)	465, 666
BmgBI	CACGTC	1 cut(s)	89
BmgT120I	GGNCC	3 cut(s)	635, 664, 713
BmrFI	CCNGG	4 cut(s)	396, 642, 667, 668
BpiI	GAAGAC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	2 cut(s)	667, 668
BsaJI	CCNNGG	1 cut(s)	666
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	7 cut(s)	365, 436, 472, 616, 617, 647, 721
Bse1I	ACTGG	3 cut(s)	552, 652, 726
BseBI	CCWGG	2 cut(s)	396, 642
BseDI	CCNNGG	1 cut(s)	666
BseGI	GGATG	1 cut(s)	449
BseLI	CCNNNNNNNGG	7 cut(s)	365, 436, 472, 616, 617, 647, 721
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	3 cut(s)	552, 652, 726
BseXI	GCAGC	1 cut(s)	664
BsgI	GTGCAG	1 cut(s)	663
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	665, 714
BsiHKCI	CYCGRG	2 cut(s)	465, 666
BsiSI	CCGG	1 cut(s)	667
BslI	CCNNNNNNNGG	7 cut(s)	365, 436, 472, 616, 617, 647, 721
BsmI	GAATGC	1 cut(s)	694
BsnI	GGCC	2 cut(s)	665, 714
BsoBI	CYCGRG	2 cut(s)	465, 666
Bsp143I	GATC	5 cut(s)	43, 105, 289, 400, 432
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	2 cut(s)	665, 714
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	56
BspPI	GGATC	1 cut(s)	100
BsrI	ACTGG	3 cut(s)	552, 652, 726
BssECI	CCNNGG	1 cut(s)	666
BssMI	GATC	5 cut(s)	43, 105, 289, 400, 432
Bst2UI	CCWGG	2 cut(s)	396, 642
BstC8I	GCNNGC	2 cut(s)	51, 712
BstDEI	CTNAG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	449
BstFNI	CGCG	1 cut(s)	56
BstKTI	GATC	5 cut(s)	46, 108, 292, 403, 435
BstMBI	GATC	5 cut(s)	43, 105, 289, 400, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 677
BstNI	CCWGG	2 cut(s)	396, 642
BstSCI	CCNGG	4 cut(s)	394, 640, 665, 666
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	664
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	2 cut(s)	105, 400
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	2 cut(s)	105, 400
BsuI	GTATCC	2 cut(s)	19, 433
BsuRI	GGCC	2 cut(s)	665, 714
BtgZI	GCGATG	1 cut(s)	71
BtrI	CACGTC	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	449
Cac8I	GCNNGC	2 cut(s)	51, 712
Cfr13I	GGNCC	3 cut(s)	635, 664, 713
Cfr9I	CCCGGG	1 cut(s)	666
CviAII	CATG	1 cut(s)	571
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	5 cut(s)	45, 107, 291, 402, 434
DpnII	GATC	5 cut(s)	43, 105, 289, 400, 432
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	522
Eco88I	CYCGRG	2 cut(s)	465, 666
EcoRI	GAATTC	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	394, 640
FaeI	CATG	1 cut(s)	574
FaiI	YATR	6 cut(s)	14, 157, 459, 479, 572, 633
FatI	CATG	1 cut(s)	570
Fnu4HI	GCNGC	2 cut(s)	54, 678
FokI	GGATG	1 cut(s)	436
Fsp4HI	GCNGC	2 cut(s)	54, 678
FspBI	CTAG	1 cut(s)	527
GluI	GCNGC	2 cut(s)	54, 678
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	665, 714
HapII	CCGG	1 cut(s)	667
Hin1II	CATG	1 cut(s)	574
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	6 cut(s)	152, 178, 250, 296, 461, 538
HpaII	CCGG	1 cut(s)	667
Hpy166II	GTNNAC	2 cut(s)	376, 415
Hpy188I	TCNGA	6 cut(s)	80, 110, 345, 454, 594, 702
Hpy188III	TCNNGA	6 cut(s)	95, 182, 254, 293, 465, 542
Hpy8I	GTNNAC	2 cut(s)	376, 415
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	3 cut(s)	130, 680, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 677
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	574
Kzo9I	GATC	5 cut(s)	43, 105, 289, 400, 432
LmnI	GCTCC	2 cut(s)	145, 583
Lsp1109I	GCAGC	1 cut(s)	664
MaeI	CTAG	1 cut(s)	527
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	5 cut(s)	45, 107, 291, 402, 434
MboI	GATC	5 cut(s)	43, 105, 289, 400, 432
MboII	GAAGA	6 cut(s)	83, 134, 178, 269, 284, 515
MflI	RGATCY	2 cut(s)	105, 400
MluCI	AATT	4 cut(s)	111, 125, 386, 596
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	7 cut(s)	16, 31, 262, 475, 515, 547, 648
MseI	TTAA	3 cut(s)	192, 389, 659
MspI	CCGG	1 cut(s)	667
MspR9I	CCNGG	4 cut(s)	396, 642, 667, 668
Mva1269I	GAATGC	1 cut(s)	694
MvaI	CCWGG	2 cut(s)	396, 642
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	202, 677
NciI	CCSGG	2 cut(s)	667, 668
NdeII	GATC	5 cut(s)	43, 105, 289, 400, 432
NlaIII	CATG	1 cut(s)	574
PctI	GAATGC	1 cut(s)	694
PfeI	GAWTC	5 cut(s)	152, 178, 250, 461, 538
PflFI	GACNNNGTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	640
PkrI	GCNGC	2 cut(s)	55, 679
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Psp6I	CCWGG	2 cut(s)	394, 640
PspGI	CCWGG	2 cut(s)	394, 640
PspPI	GGNCC	3 cut(s)	635, 664, 713
PsuI	RGATCY	2 cut(s)	105, 400
PsyI	GACNNNGTC	1 cut(s)	74
SaqAI	TTAA	3 cut(s)	192, 389, 659
SatI	GCNGC	2 cut(s)	54, 678
Sau3AI	GATC	5 cut(s)	43, 105, 289, 400, 432
Sau96I	GGNCC	3 cut(s)	635, 664, 713
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	4 cut(s)	396, 642, 667, 668
SetI	ASST	9 cut(s)	35, 51, 91, 150, 198, 268, 432, 486, 640
SinI	GGWCC	1 cut(s)	635
SmaI	CCCGGG	1 cut(s)	668
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SrfI	GCCCGGGC	1 cut(s)	668
Sse9I	AATT	4 cut(s)	111, 125, 386, 596
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	1 cut(s)	527
StyD4I	CCNGG	4 cut(s)	394, 640, 665, 666
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	3 cut(s)	21, 36, 96
TasI	AATT	4 cut(s)	111, 125, 386, 596
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	5 cut(s)	152, 178, 250, 461, 538
Tru1I	TTAA	3 cut(s)	192, 389, 659
Tru9I	TTAA	3 cut(s)	192, 389, 659
TseI	GCWGC	1 cut(s)	677
TspDTI	ATGAA	3 cut(s)	144, 263, 276
TspMI	CCCGGG	1 cut(s)	666
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	1 cut(s)	111
XmaI	CCCGGG	1 cut(s)	666
XspI	CTAG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.