Rw1G022930

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001970
Physical Location & Seq
Forward (+)
48541390 .. 48548037
6648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G022930.1

Sequence Viewer

Length: 867 bp
ATGGCGACCAATATGGTGGTCAAGGATACGAGCTTCGAGGATGATCAGCTGGCCGCGATGACCACCGACGACATTGTCAGGGCCACCCATCTTCTGGACAACGAGATCCGAATTCTCAAGGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAAGCTCAATAAGCAGTTGCCCTGCTTGGTTGGCAACATTGTTGAGATGATGAGTTTGTTGTTATTCAAAAATTACCTGGTTCTGACTGATGAAGCTGAGGAAGATGGGGCAAACATTTATCTTGACTCACAAAGAAAGGGCAAGTGTGTTGTTTTGAAAACATCTACTCCTCAGGCTATGGAGTTTGATGAGAAACCAACTGAAGATTACAATGATATTGGAGGGCTAGAGAAACAGATTCAAGAACTGGTTGAGGCAATTGTTTTACCCATGACCCACATGGAGCGTTTTCAGAAATTAGGGGTTCGCCCACCAAAGGAAGTTCTTTTGTATGGACCTCCTGGAACTGGTAAAACTTTAATGGCCCGGGCTTGTGCTGCACAAACGAATGCCACTTTTCTGAAACTTGCAGGCCCACAACTGGTTCAGGAATCAAGATCCAGGAGTTTATACTTGACGAAGCAATTATGCTTGAGACTGCACTTTTTGGTAAATCTCCATACACCTAATAATCTGCCTATACATGCCTCTTCCTCATCCTCTCTATCAGCAAGGCAATTGCTCAGAGAACAACAGAAAACTAGTTCTGTTGATGTAATGACTTTGTTGGATATATGGATGAATGTATCGGATTTTAACATAAATGAATGTGTTTTGGATGTGATGTCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

288

Amino Acids

32.63

Weight (kDa)

5.29

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 172 - 210 2.2e-10 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccB7I CCANNNNNTGG 1 cut(s) 94
AccII CGCG 1 cut(s) 56
AciI CCGC 1 cut(s) 54
AclWI GGATC 2 cut(s) 100, 624
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 414
AfiI CCNNNNNNNGG 4 cut(s) 94, 508, 539, 613
AgsI TTSAA 3 cut(s) 259, 349, 434
AhlI ACTAGT 1 cut(s) 773
AjnI CCWGG 3 cut(s) 267, 532, 632
AluBI AGCT 5 cut(s) 33, 49, 148, 196, 287
AluI AGCT 5 cut(s) 33, 49, 148, 196, 287
Alw26I GTCTC 1 cut(s) 661
AlwI GGATC 2 cut(s) 100, 624
Ama87I CYCGRG 1 cut(s) 558
AoxI GGCC 4 cut(s) 51, 81, 555, 604
ApeKI GCWGC 1 cut(s) 569
ApoI RAATTY 1 cut(s) 111
AspS9I GGNCC 4 cut(s) 81, 527, 556, 605
AsuC2I CCSGG 2 cut(s) 559, 560
AvaI CYCGRG 1 cut(s) 558
AvaII GGWCC 1 cut(s) 527
AxyI CCTNAGG 1 cut(s) 363
BbvCI CCTCAGC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 556
BccI CCATC 2 cut(s) 96, 290
BciT130I CCWGG 3 cut(s) 269, 534, 634
BciVI GTATCC 1 cut(s) 19
BclI TGATCA 1 cut(s) 43
BcnI CCSGG 2 cut(s) 559, 560
BcoDI GTCTC 1 cut(s) 661
BcuI ACTAGT 1 cut(s) 773
BfaI CTAG 2 cut(s) 419, 774
BfuI GTATCC 1 cut(s) 19
BisI GCNGC 2 cut(s) 54, 570
BlsI GCNGC 2 cut(s) 55, 571
Bme1390I CCNGG 5 cut(s) 269, 534, 559, 560, 634
Bme18I GGWCC 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 558
BmgT120I GGNCC 4 cut(s) 81, 527, 556, 605
BmrFI CCNGG 5 cut(s) 269, 534, 559, 560, 634
Bpu10I CCTNAGC 1 cut(s) 288
BpuEI CTTGAG 2 cut(s) 101, 685
BpuMI CCSGG 2 cut(s) 559, 560
BsaJI CCNNGG 1 cut(s) 558
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bsc4I CCNNNNNNNGG 4 cut(s) 94, 508, 539, 613
Bse1I ACTGG 3 cut(s) 444, 544, 618
Bse21I CCTNAGG 1 cut(s) 363
BseBI CCWGG 3 cut(s) 269, 534, 634
BseDI CCNNGG 1 cut(s) 558
BseGI GGATG 4 cut(s) 46, 728, 816, 856
BseLI CCNNNNNNNGG 4 cut(s) 94, 508, 539, 613
BseMII CTCAG 3 cut(s) 279, 377, 769
BseNI ACTGG 3 cut(s) 444, 544, 618
BseRI GAGGAG 1 cut(s) 351
BseXI GCAGC 1 cut(s) 556
BsgI GTGCAG 2 cut(s) 555, 656
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 4 cut(s) 53, 83, 557, 606
BsiHKCI CYCGRG 1 cut(s) 558
BsiSI CCGG 1 cut(s) 559
BslI CCNNNNNNNGG 4 cut(s) 94, 508, 539, 613
BsmAI GTCTC 1 cut(s) 661
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 4 cut(s) 53, 83, 557, 606
BsoBI CYCGRG 1 cut(s) 558
Bsp143I GATC 3 cut(s) 43, 105, 629
BspACI CCGC 1 cut(s) 54
BspANI GGCC 4 cut(s) 53, 83, 557, 606
BspCNI CTCAG 3 cut(s) 280, 376, 768
BspFNI CGCG 1 cut(s) 56
BspPI GGATC 2 cut(s) 100, 624
BsrI ACTGG 3 cut(s) 444, 544, 618
BssECI CCNNGG 1 cut(s) 558
BssMI GATC 3 cut(s) 43, 105, 629
Bst2UI CCWGG 3 cut(s) 269, 534, 634
Bst6I CTCTTC 1 cut(s) 727
BstC8I GCNNGC 2 cut(s) 51, 604
BstDEI CTNAG 3 cut(s) 288, 363, 755
BstF5I GGATG 4 cut(s) 46, 728, 816, 856
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 3 cut(s) 46, 108, 632
BstMAI GTCTC 1 cut(s) 661
BstMBI GATC 3 cut(s) 43, 105, 629
BstMWI GCNNNNNNNGC 3 cut(s) 202, 222, 569
BstNI CCWGG 3 cut(s) 269, 534, 634
BstNSI RCATGY 1 cut(s) 719
BstSCI CCNGG 5 cut(s) 267, 532, 557, 558, 632
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 556
BstX2I RGATCY 2 cut(s) 105, 629
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 2 cut(s) 105, 629
Bsu36I CCTNAGG 1 cut(s) 363
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 4 cut(s) 53, 83, 557, 606
BtgZI GCGATG 1 cut(s) 71
BtsCI GGATG 4 cut(s) 46, 728, 816, 856
Cac8I GCNNGC 2 cut(s) 51, 604
Cfr13I GGNCC 4 cut(s) 81, 527, 556, 605
Cfr9I CCCGGG 1 cut(s) 558
CsiI ACCWGGT 1 cut(s) 267
CviAII CATG 3 cut(s) 463, 472, 716
DdeI CTNAG 3 cut(s) 288, 363, 755
DpnI GATC 3 cut(s) 45, 107, 631
DpnII GATC 3 cut(s) 43, 105, 629
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 727
EarI CTCTTC 1 cut(s) 727
Eco47I GGWCC 1 cut(s) 527
Eco57I CTGAAG 1 cut(s) 414
Eco81I CCTNAGG 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 558
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 3 cut(s) 267, 532, 632
FaeI CATG 3 cut(s) 466, 475, 719
FatI CATG 3 cut(s) 462, 471, 715
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 54, 570
FokI GGATG 4 cut(s) 53, 715, 823, 863
Fsp4HI GCNGC 2 cut(s) 54, 570
FspBI CTAG 2 cut(s) 419, 774
GluI GCNGC 2 cut(s) 54, 570
HaeIII GGCC 4 cut(s) 53, 83, 557, 606
HapII CCGG 1 cut(s) 559
Hin1II CATG 3 cut(s) 466, 475, 719
HinfI GANTC 5 cut(s) 152, 178, 317, 430, 623
HpaII CCGG 1 cut(s) 559
Hpy188I TCNGA 6 cut(s) 110, 276, 486, 594, 758, 823
Hpy188III TCNNGA 6 cut(s) 95, 182, 314, 434, 620, 627
Hpy99I CGWCG 1 cut(s) 71
HpyCH4V TGCA 4 cut(s) 130, 572, 602, 673
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 222, 569
HpyF3I CTNAG 3 cut(s) 288, 363, 755
Hsp92II CATG 3 cut(s) 466, 475, 719
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 3 cut(s) 43, 105, 629
LmnI GCTCC 2 cut(s) 145, 475
Lsp1109I GCAGC 1 cut(s) 556
MabI ACCWGGT 1 cut(s) 267
MaeI CTAG 2 cut(s) 419, 774
MalI GATC 3 cut(s) 45, 107, 631
MboI GATC 3 cut(s) 43, 105, 629
MboII GAAGA 5 cut(s) 83, 134, 305, 407, 714
MfeI CAATTG 2 cut(s) 450, 749
MflI RGATCY 2 cut(s) 105, 629
MluCI AATT 7 cut(s) 111, 125, 262, 450, 488, 656, 749
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 780
MnlI CCTC 9 cut(s) 31, 283, 372, 407, 439, 540, 730, 736, 742
MseI TTAA 3 cut(s) 192, 551, 828
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 1 cut(s) 559
MspR9I CCNGG 5 cut(s) 269, 534, 559, 560, 634
MunI CAATTG 2 cut(s) 450, 749
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 3 cut(s) 269, 534, 634
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 3 cut(s) 202, 222, 569
NciI CCSGG 2 cut(s) 559, 560
NdeII GATC 3 cut(s) 43, 105, 629
NlaIII CATG 3 cut(s) 466, 475, 719
NspI RCATGY 1 cut(s) 719
PctI GAATGC 1 cut(s) 586
PfeI GAWTC 4 cut(s) 152, 178, 430, 623
PflFI GACNNNGTC 1 cut(s) 74
PflMI CCANNNNNTGG 1 cut(s) 94
PfoI TCCNGGA 2 cut(s) 532, 632
PkrI GCNGC 2 cut(s) 55, 571
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
Psp6I CCWGG 3 cut(s) 267, 532, 632
PspGI CCWGG 3 cut(s) 267, 532, 632
PspPI GGNCC 4 cut(s) 81, 527, 556, 605
PsuI RGATCY 2 cut(s) 105, 629
PsyI GACNNNGTC 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 49
SaqAI TTAA 3 cut(s) 192, 551, 828
SatI GCNGC 2 cut(s) 54, 570
Sau3AI GATC 3 cut(s) 43, 105, 629
Sau96I GGNCC 4 cut(s) 81, 527, 556, 605
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 5 cut(s) 269, 534, 559, 560, 634
SetI ASST 8 cut(s) 35, 51, 150, 198, 270, 289, 532, 700
SexAI ACCWGGT 1 cut(s) 267
SinI GGWCC 1 cut(s) 527
SmaI CCCGGG 1 cut(s) 560
SmlI CTYRAG 2 cut(s) 116, 664
SmoI CTYRAG 2 cut(s) 116, 664
SpeI ACTAGT 1 cut(s) 773
SrfI GCCCGGGC 1 cut(s) 560
Sse9I AATT 7 cut(s) 111, 125, 262, 450, 488, 656, 749
SsiI CCGC 1 cut(s) 54
SspMI CTAG 2 cut(s) 419, 774
StyD4I CCNGG 5 cut(s) 267, 532, 557, 558, 632
TaqI TCGA 1 cut(s) 36
TasI AATT 7 cut(s) 111, 125, 262, 450, 488, 656, 749
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 4 cut(s) 152, 178, 430, 623
Tru1I TTAA 3 cut(s) 192, 551, 828
Tru9I TTAA 3 cut(s) 192, 551, 828
TseI GCWGC 1 cut(s) 569
TspDTI ATGAA 4 cut(s) 144, 297, 827, 852
TspMI CCCGGG 1 cut(s) 558
Tth111I GACNNNGTC 1 cut(s) 74
Van91I CCANNNNNTGG 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 527
XapI RAATTY 1 cut(s) 111
XceI RCATGY 1 cut(s) 719
XcmI CCANNNNNNNNNTGG 2 cut(s) 91, 469
XmaI CCCGGG 1 cut(s) 558
XspI CTAG 2 cut(s) 419, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.