Rorug05G0270100

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001970
Physical Location & Seq
Reverse (-)
30449123 .. 30458129
9007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0270100.1

Sequence Viewer

Length: 3129 bp
ATGGCTATGGGGTTCTCCTCCTTCCAGACCAGCCATTTGAGGCCTTGCCCTTCTTATTTCTCTTTATTACGGGCTTGTCCTCTGTCTTCTTCGTCTTCTAGGTCCCTATGGACTCCTTCAGTTTCAAGGCGAGTTTTGGATTGCAAGCCAGAGGTCTATGTTGGGCGCCTAAGGGGTGTCCAGGCTGCCAAATCATATAATACTTTGACCTCTGAAGGAAAATCCAACGACTCTAGATATGCCTGGAGAGCTGCGGTTACTCGCCTGAGGAAAGAAAAACAGGAAGTGGAAAGTTCTTACAGAAGTAAGACATACTCTGAAGGAAATATAAAAACGATTACCCCTGAAAAGGTTGATAACAGTAGCTATGAGATGGGGGATGTAACTTTATATGAGACACATGGTGAAGGAAGTAATGTGGACAGAGTAAACGGTTATGCGCACGATAATCCAGATGTAGTAGCTTCTGTAGGAATTGACAATCCTAGTGTGGAAAAGGTGAATGGTTATGCACATGATGGTCCAAGACTGGGTGTGGCTACGCCACCCAGATCAGGGAAGGAAGTTAAGTCCAAGGGGCCATTATTGGGGAAGACCTCAAAGGTCAGGAAAGGGATTGATTCTGGACATAGTAAAGTTGAAGCCGGTAATGTGATGAACAGGGACAAGTCCGATGTAAAATCTTCTGAATCTAAAGCTGCTACACCAGTACATAGTAAGGAAGATCTTCGCAAGACACTTAATAACATTTACGACAAAGTTCTCATTGTCAATAGTGTCTCTATTGCAAAGAAAGTCGTTAGGATGCTTAGAGGAGAATATAGGCATCTTGTCCATGCCTGTGACACAGAGGTGGCCGAGATAGATGTTAAGAAAGAAACACCTGTAGATCATGGACAGATAATATGCTTCAGTATATATTCTGGACCAGATGTGGATTTTGGAAATGGAAAGTCCTGCATCTGGGTGGATGTTCTTGATGGTGGCGGCAAGGAACTTCTACTTGAATTTGCTCCATTTTTTGAAGATCCCTCCATTAAAAAGGTTTGGCACAATTATAGCTTTGATAACCATGTAATTGAGAACTATGGGTTTAAGGTTTCTGGCTTTCATGCCGACACCATGCACATGGCCCGCTTGTGGGATTCATCAAGGCGGTTAAAGGGTGGTTACTCTCTTGAAGCTCTAACACATGACCCAAAGGTCATGTCTGGGGCACCATCATGTGAGGAGAATGACTTGATTGGTAAGATATCAATGAAGACAATATTTGGCAGAAAGAAATTGAAAAAAGATGGTACCGATGGGAAAATAACAATCCTTGACCCAGTTGAAGTGCTACAAAGAGAGGAGAGAAAACCATGGATCTGTTATTCTGCGTTAGATGCAATAAGCACACTAAAGCTTTATGAGAGTATGAAAAACCAACTCTCCAATAGGCAGTGGGAAATTGATGGAATTCCAGCTCCTGGAACCATGTTTGATTTCTATAAAAAATACTGGCAACCATTTGGCGAGCTCTTAGTTCAGATGGAAACCGAGGGAATGCTGGTTGATCGAGGATATCTAGCTGAAATTGAGAAGTTGGCCAAATCAGAACAAGAGGTTGCTGTGAATAGATTTCGCAAGTGGGCTTCCAGCTTTTGCCCTGATGCTAAGTACATGAATGTGGGAAGTGATGTGCAACTACGCCAGCTTTTATTTGGTGGGACTGTGAACAGCAAGGACTCGAATCAGGCTCTTCCAAATGAGAGGACTTTTAGAGTTCCAAACACTGATAAAGTGATTGAAGAAGGCAAAAGTACAACTCCAAAATTTCGCAATATCACTCTGCACACAATTGGTGTCAATCTGCCAACTGAGATTTACACAGCAACTGGTTGGCCTTCAGTTAGCGGAGATGCTTTGAAGATTTTAGCTGGCAAGATCTCTTCAGAGTATGATTTTATGGATCCCGCTCCTGATATGGAGTCTGTTGATGATGGAGATTCTTGTGAGACAGTGAGTGATGAATACTTGGGAAAAGAAGAGATTATCTCTGAAAATCTTGACAGGTCTGACTATGGAACAGCTTTGCAAGCATTCGAGTCAGAGGAGAAGGGGAAGGAAGCTTGCCACGCCATTGCTGCATTATGTCAAGTTTGCTCTATTGATTCGTTGATATCCAACTTCATCCTCCCTTTGCAGGGCAGTAATATAGCTGGCAAAAACAGACGAATTCATTGTTCACTAAATATCAACACAGAAACTGGGCGGTTATCTGCTAGGCGACCAAATTTGCAGAATCAACCAGCGCTTGAAAAGGACCGGTATAAGATCCGCCAGGCATTTGTAGCTGCGCCTGGAAATTCTCTCATTGTTGCTGACTATGGACAGCTGGAACTTAGGATTCTTGCTCATCTTTCTAACTGTAAGAGCATGTTGGATGCCTTCAAAGCTGGTGGGGATTTCCATTCAAGGACTGCAATGAACATGTACCAGCATATTCGTGAAGCTGTTGAGAACAAGGAAGTGCTACTTGAGTGGGATCCTCAACCTGGTCAGGATAAACCCCCAGTTCCAATGTTGAAGGATACCTACGGATCTGAGAGAAGGAAAGCTAAAATGCTCAACTTTTCCATTGCATATGGGAAAACTCCAGTTGGGCTTTCCCGGGATTGGAAGGTATCTGTCCAGGATGCAGAGAAAACAGTTGAACTTTGGTACAAAGAAAGAAAAGAAGTGAGAAGGTGGCAAGAAGAACGTAAAAAAGAAGCTAAAGAATTTAGATGCGTTCGAACATTGCTAGGACGGGCACGCTGGTTTCCCTCATTAACTCGTGCTAGCCGTGCTCAAAGAGGACATATTGAAAGGGCTGCTATCAATACTCCAGTGCAGGGTAGTGCTGCTGATGTCGCCATGTGTGCCATGTTAGAGATATCCAATAATGCACGTTTGAAAGATCTTGGGTGGAGGCTGCTTTTACAGGTCCATGATGAAGTCATCTTGGAAGGGCCATCAGAATCAGAGGAGGTTGCAAAGGCCATAGTTGTTGACTGCATGTCGAAGCCCTTTGGTGGCAAGAACATCCTTAATGTTGACCTTGCGGTTGATGCCAAGTGTGCACAGAACTGGTATGCTGCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

1042

Amino Acids

116.54

Weight (kDa)

8.18

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_A_exo1 PF01612 315 - 477 7.8e-10 3'-5' exonuclease
DNA_pol_A PF00476 705 - 835 2.2e-30 DNA polymerase family A
DNA_pol_A PF00476 861 - 1039 4.2e-45 DNA polymerase family A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1202
Acc16I TGCGCA 1 cut(s) 441
Acc65I GGTACC 1 cut(s) 1298
AccB1I GGYRCC 3 cut(s) 165, 1216, 1298
AccB7I CCANNNNNTGG 1 cut(s) 1469
AccBSI CCGCTC 1 cut(s) 1958
AciI CCGC 9 cut(s) 254, 987, 1135, 1156, 1896, 1956, 2254, 2320, 3086
AclWI GGATC 8 cut(s) 1022, 1373, 1946, 1959, 2311, 2522, 2535, 2590
AcoI YGGCCR 2 cut(s) 855, 1587
AcsI RAATTY 7 cut(s) 1007, 1458, 1814, 2217, 2275, 2347, 2762
AcuI CTGAAG 6 cut(s) 102, 234, 339, 895, 1872, 1917
AcyI GRCGYC 1 cut(s) 166
AdeI CACNNNGTG 1 cut(s) 404
AfaI GTAC 6 cut(s) 711, 1300, 1661, 1804, 2477, 2705
AfeI AGCGCT 1 cut(s) 2295
AflIII ACRYGT 1 cut(s) 2472
AgeI ACCGGT 1 cut(s) 2307
AhdI GACNNNNNGTC 1 cut(s) 3040
AjnI CCWGG 7 cut(s) 180, 242, 1468, 2322, 2341, 2536, 2673
AleI CACNNNNGTG 1 cut(s) 851
Alw21I GWGCWC 3 cut(s) 1521, 2833, 3106
Alw26I GTCTC 3 cut(s) 389, 784, 1991
Alw44I GTGCAC 1 cut(s) 3102
AlwI GGATC 8 cut(s) 1022, 1373, 1946, 1959, 2311, 2522, 2535, 2590
AlwNI CAGNNNCTG 3 cut(s) 1469, 1877, 2249
Ama87I CYCGRG 1 cut(s) 2652
Aor51HI AGCGCT 1 cut(s) 2295
AoxI GGCC 8 cut(s) 41, 578, 855, 1131, 1587, 1883, 2993, 3021
ApaLI GTGCAC 1 cut(s) 3102
ApeKI GCWGC 9 cut(s) 185, 251, 698, 2126, 2336, 2855, 2885, 2956, 3119
ApoI RAATTY 7 cut(s) 1007, 1458, 1814, 2217, 2275, 2347, 2762
ArsI GACNNNNNNTTYG 4 cut(s) 19, 51, 1193, 1225
AsiGI ACCGGT 1 cut(s) 2307
Asp700I GAANNNNTTC 1 cut(s) 726
Asp718I GGTACC 1 cut(s) 1298
AspLEI GCGC 4 cut(s) 168, 442, 2296, 2341
AspS9I GGNCC 8 cut(s) 102, 521, 578, 926, 1132, 2305, 2968, 2993
AsuC2I CCSGG 2 cut(s) 2653, 2654
AsuHPI GGTGA 2 cut(s) 416, 511
AsuII TTCGAA 1 cut(s) 2776
AsuNHI GCTAGC 1 cut(s) 2822
AvaI CYCGRG 1 cut(s) 2652
AvaII GGWCC 5 cut(s) 102, 521, 926, 2305, 2968
AxyI CCTNAGG 2 cut(s) 170, 266
BaeGI GKGCMC 3 cut(s) 1219, 2797, 3106
BalI TGGCCA 1 cut(s) 1589
BamHI GGATCC 2 cut(s) 1951, 2527
BanI GGYRCC 3 cut(s) 165, 1216, 1298
BanII GRGCYC 1 cut(s) 1521
BarI GAAGNNNNNNTAC 2 cut(s) 2561, 2593
BauI CACGAG 1 cut(s) 2817
BbsI GAAGAC 4 cut(s) 78, 87, 599, 1268
Bbv12I GWGCWC 3 cut(s) 1521, 2833, 3106
BbvI GCAGC 9 cut(s) 172, 238, 685, 2113, 2323, 2842, 2872, 2943, 3106
BceAI ACGGC 1 cut(s) 2811
BciT130I CCWGG 7 cut(s) 182, 244, 1470, 2324, 2343, 2538, 2675
BciVI GTATCC 1 cut(s) 2566
BcnI CCSGG 2 cut(s) 2653, 2654
BcoDI GTCTC 3 cut(s) 389, 784, 1991
BfaI CTAG 7 cut(s) 99, 234, 486, 1568, 2265, 2786, 2823
BfmI CTRYAG 2 cut(s) 468, 885
BfoI RGCGCY 2 cut(s) 169, 2297
BfuI GTATCC 1 cut(s) 2566
BglII AGATCT 3 cut(s) 724, 1926, 2941
Bme1390I CCNGG 9 cut(s) 182, 244, 1470, 2324, 2343, 2538, 2653, 2654, 2675
Bme18I GGWCC 5 cut(s) 102, 521, 926, 2305, 2968
BmeRI GACNNNNNGTC 1 cut(s) 3040
BmeT110I CYCGRG 1 cut(s) 2652
BmgT120I GGNCC 8 cut(s) 102, 521, 578, 926, 1132, 2305, 2968, 2993
BmiI GGNNCC 8 cut(s) 104, 167, 579, 1218, 1300, 1474, 1953, 2529
BmrFI CCNGG 9 cut(s) 182, 244, 1470, 2324, 2343, 2538, 2653, 2654, 2675
BmrI ACTGGG 4 cut(s) 539, 1322, 2259, 2549
BmtI GCTAGC 1 cut(s) 2826
BmuI ACTGGG 4 cut(s) 539, 1322, 2259, 2549
BpiI GAAGAC 4 cut(s) 78, 87, 599, 1268
BplI GAGNNNNNCTC 2 cut(s) 2021, 2053
BpmI CTGGAG 3 cut(s) 265, 2622, 2853
Bpu14I TTCGAA 1 cut(s) 2776
BpuEI CTTGAG 1 cut(s) 2540
BpuMI CCSGG 2 cut(s) 2653, 2654
BsaHI GRCGYC 1 cut(s) 166
BsaJI CCNNGG 4 cut(s) 573, 1361, 1539, 2652
BsaWI WCCGGW 1 cut(s) 2307
BsaXI ACNNNNNCTCC 2 cut(s) 1415, 1445
Bse118I RCCGGY 2 cut(s) 644, 2307
Bse21I CCTNAGG 2 cut(s) 170, 266
Bse3DI GCAATG 4 cut(s) 2121, 2472, 2619, 2780
BseBI CCWGG 7 cut(s) 182, 244, 1470, 2324, 2343, 2538, 2675
BseDI CCNNGG 4 cut(s) 573, 1361, 1539, 2652
BseGI GGATG 7 cut(s) 385, 810, 976, 2172, 2431, 2683, 3066
BseMI GCAATG 4 cut(s) 2121, 2472, 2619, 2780
BseMII CTCAG 3 cut(s) 257, 1851, 2577
BseRI GAGGAG 6 cut(s) 7, 828, 1244, 1364, 2108, 3023
BseSI GKGCMC 3 cut(s) 1219, 2797, 3106
BseXI GCAGC 9 cut(s) 172, 238, 685, 2113, 2323, 2842, 2872, 2943, 3106
BsgI GTGCAG 2 cut(s) 1817, 2894
BshFI GGCC 8 cut(s) 43, 580, 857, 1133, 1589, 1885, 2995, 3023
BshNI GGYRCC 3 cut(s) 165, 1216, 1298
BshTI ACCGGT 1 cut(s) 2307
BsiHKAI GWGCWC 3 cut(s) 1521, 2833, 3106
BsiHKCI CYCGRG 1 cut(s) 2652
BsiSI CCGG 3 cut(s) 645, 2308, 2653
BslFI GGGAC 3 cut(s) 88, 677, 1723
BsmAI GTCTC 3 cut(s) 389, 784, 1991
BsmFI GGGAC 3 cut(s) 88, 677, 1723
BsmI GAATGC 2 cut(s) 1551, 2081
BsnI GGCC 8 cut(s) 43, 580, 857, 1133, 1589, 1885, 2995, 3023
BsoBI CYCGRG 1 cut(s) 2652
Bsp119I TTCGAA 1 cut(s) 2776
Bsp1286I GDGCHC 5 cut(s) 1219, 1521, 2797, 2833, 3106
Bsp19I CCATGG 1 cut(s) 1361
BspACI CCGC 9 cut(s) 254, 987, 1135, 1156, 1896, 1956, 2254, 2320, 3086
BspANI GGCC 8 cut(s) 43, 580, 857, 1133, 1589, 1885, 2995, 3023
BspCNI CTCAG 3 cut(s) 258, 1852, 2578
BspLI GGNNCC 8 cut(s) 104, 167, 579, 1218, 1300, 1474, 1953, 2529
BspOI GCTAGC 1 cut(s) 2826
BspPI GGATC 8 cut(s) 1022, 1373, 1946, 1959, 2311, 2522, 2535, 2590
BspQI GCTCTTC 1 cut(s) 1746
BspT104I TTCGAA 1 cut(s) 2776
BspT107I GGYRCC 3 cut(s) 165, 1216, 1298
BsrBI CCGCTC 1 cut(s) 1958
BsrDI GCAATG 4 cut(s) 2121, 2472, 2619, 2780
BsrFI RCCGGY 2 cut(s) 644, 2307
BssAI RCCGGY 2 cut(s) 644, 2307
BssECI CCNNGG 4 cut(s) 573, 1361, 1539, 2652
BssNI GRCGYC 1 cut(s) 166
BssSI CACGAG 1 cut(s) 2817
BssT1I CCWWGG 2 cut(s) 573, 1361
Bst2BI CACGAG 1 cut(s) 2817
Bst2UI CCWGG 7 cut(s) 182, 244, 1470, 2324, 2343, 2538, 2675
Bst4CI ACNGT 6 cut(s) 362, 434, 1714, 2002, 2411, 2692
Bst6I CTCTTC 3 cut(s) 1746, 1936, 2022
BstACI GRCGYC 1 cut(s) 166
BstBI TTCGAA 1 cut(s) 2776
BstDEI CTNAG 8 cut(s) 170, 266, 809, 1522, 1656, 1860, 2384, 2586
BstDSI CCRYGG 1 cut(s) 1361
BstF5I GGATG 7 cut(s) 385, 810, 976, 2172, 2431, 2683, 3066
BstH2I RGCGCY 2 cut(s) 169, 2297
BstHHI GCGC 4 cut(s) 168, 442, 2296, 2341
BstMAI GTCTC 3 cut(s) 389, 784, 1991
BstNI CCWGG 7 cut(s) 182, 244, 1470, 2324, 2343, 2538, 2675
BstNSI RCATGY 3 cut(s) 2422, 2476, 3043
BstSCI CCNGG 9 cut(s) 180, 242, 1468, 2322, 2341, 2536, 2651, 2652, 2673
BstSFI CTRYAG 2 cut(s) 468, 885
BstSLI GKGCMC 3 cut(s) 1219, 2797, 3106
BstV1I GCAGC 9 cut(s) 172, 238, 685, 2113, 2323, 2842, 2872, 2943, 3106
BstV2I GAAGAC 4 cut(s) 78, 87, 599, 1268
BstX2I RGATCY 9 cut(s) 724, 1027, 1365, 1926, 1951, 2316, 2527, 2582, 2941
BstXI CCANNNNNNTGG 1 cut(s) 1129
BstYI RGATCY 9 cut(s) 724, 1027, 1365, 1926, 1951, 2316, 2527, 2582, 2941
Bsu36I CCTNAGG 2 cut(s) 170, 266
BsuI GTATCC 1 cut(s) 2566
BsuRI GGCC 8 cut(s) 43, 580, 857, 1133, 1589, 1885, 2995, 3023
BtgI CCRYGG 1 cut(s) 1361
BtsCI GGATG 7 cut(s) 385, 810, 976, 2172, 2431, 2683, 3066
BtsI GCAGTG 1 cut(s) 1448
BtsIMutI CAGTG 4 cut(s) 1448, 1773, 2007, 2877
CaiI CAGNNNCTG 3 cut(s) 1469, 1877, 2249
CfoI GCGC 4 cut(s) 168, 442, 2296, 2341
Cfr10I RCCGGY 2 cut(s) 644, 2307
Cfr13I GGNCC 8 cut(s) 102, 521, 578, 926, 1132, 2305, 2968, 2993
Cfr9I CCCGGG 1 cut(s) 2652
CsiI ACCWGGT 1 cut(s) 2536
Csp6I GTAC 6 cut(s) 710, 1299, 1660, 1803, 2476, 2704
CspAI ACCGGT 1 cut(s) 2307
CspCI CAANNNNNGTGG 2 cut(s) 2422, 2457
CviQI GTAC 6 cut(s) 710, 1299, 1660, 1803, 2476, 2704
DdeI CTNAG 8 cut(s) 170, 266, 809, 1522, 1656, 1860, 2384, 2586
DinI GGCGCC 1 cut(s) 167
DraIII CACNNNGTG 1 cut(s) 404
DrdI GACNNNNNNGTC 1 cut(s) 1202
DriI GACNNNNNGTC 1 cut(s) 3040
DseDI GACNNNNNNGTC 1 cut(s) 1202
EaeI YGGCCR 2 cut(s) 855, 1587
Eam1104I CTCTTC 3 cut(s) 1746, 1936, 2022
Eam1105I GACNNNNNGTC 1 cut(s) 3040
EarI CTCTTC 3 cut(s) 1746, 1936, 2022
EciI GGCGGA 1 cut(s) 2309
Ecl136II GAGCTC 1 cut(s) 1519
Eco130I CCWWGG 2 cut(s) 573, 1361
Eco147I AGGCCT 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 1521
Eco32I GATATC 4 cut(s) 1254, 1565, 2163, 2919
Eco47I GGWCC 5 cut(s) 102, 521, 926, 2305, 2968
Eco47III AGCGCT 1 cut(s) 2295
Eco53kI GAGCTC 1 cut(s) 1519
Eco57I CTGAAG 6 cut(s) 102, 234, 339, 895, 1872, 1917
Eco81I CCTNAGG 2 cut(s) 170, 266
Eco88I CYCGRG 1 cut(s) 2652
EcoICRI GAGCTC 1 cut(s) 1519
EcoO109I RGGNCCY 1 cut(s) 102
EcoRI GAATTC 2 cut(s) 1458, 2217
EcoRII CCWGG 7 cut(s) 180, 242, 1468, 2322, 2341, 2536, 2673
EcoRV GATATC 4 cut(s) 1254, 1565, 2163, 2919
EcoT14I CCWWGG 2 cut(s) 573, 1361
EcoT38I GRGCYC 1 cut(s) 1521
EgeI GGCGCC 1 cut(s) 167
EheI GGCGCC 1 cut(s) 167
ErhI CCWWGG 2 cut(s) 573, 1361
FalI AAGNNNNNCTT 2 cut(s) 2502, 2534
FaqI GGGAC 3 cut(s) 88, 677, 1723
FauI CCCGC 2 cut(s) 1142, 1963
FauNDI CATATG 1 cut(s) 2626
FokI GGATG 7 cut(s) 392, 817, 983, 2159, 2438, 2690, 3053
FriOI GRGCYC 1 cut(s) 1521
FspAI RTGCGCAY 1 cut(s) 441
FspBI CTAG 7 cut(s) 99, 234, 486, 1568, 2265, 2786, 2823
FspI TGCGCA 1 cut(s) 441
GlaI GCGC 4 cut(s) 167, 441, 2295, 2340
GsuI CTGGAG 3 cut(s) 265, 2622, 2853
HaeII RGCGCY 2 cut(s) 169, 2297
HaeIII GGCC 8 cut(s) 43, 580, 857, 1133, 1589, 1885, 2995, 3023
HapII CCGG 3 cut(s) 645, 2308, 2653
HhaI GCGC 4 cut(s) 168, 442, 2296, 2341
Hin1I GRCGYC 1 cut(s) 166
Hin6I GCGC 4 cut(s) 166, 440, 2294, 2339
HinP1I GCGC 4 cut(s) 166, 440, 2294, 2339
HincII GTYRAC 2 cut(s) 3034, 3079
HindII GTYRAC 2 cut(s) 3034, 3079
HindIII AAGCTT 2 cut(s) 1403, 2109
HpaII CCGG 3 cut(s) 645, 2308, 2653
HphI GGTGA 2 cut(s) 416, 511
Hpy166II GTNNAC 7 cut(s) 421, 430, 1717, 2228, 3034, 3079, 3104
Hpy8I GTNNAC 7 cut(s) 421, 430, 1717, 2228, 3034, 3079, 3104
HpyCH4III ACNGT 6 cut(s) 362, 434, 1714, 2002, 2411, 2692
HpyCH4IV ACGT 2 cut(s) 2743, 2932
HpyF3I CTNAG 8 cut(s) 170, 266, 809, 1522, 1656, 1860, 2384, 2586
HpySE526I ACGT 2 cut(s) 2743, 2932
Hsp92I GRCGYC 1 cut(s) 166
HspAI GCGC 4 cut(s) 166, 440, 2294, 2339
KasI GGCGCC 1 cut(s) 165
KpnI GGTACC 1 cut(s) 1302
LguI GCTCTTC 1 cut(s) 1746
LmnI GCTCC 3 cut(s) 1018, 1471, 1963
Lsp1109I GCAGC 9 cut(s) 172, 238, 685, 2113, 2323, 2842, 2872, 2943, 3106
MabI ACCWGGT 1 cut(s) 2536
MaeI CTAG 7 cut(s) 99, 234, 486, 1568, 2265, 2786, 2823
MaeII ACGT 2 cut(s) 2743, 2932
MaeIII GTNAC 4 cut(s) 256, 382, 842, 1169
MbiI CCGCTC 1 cut(s) 1958
MfeI CAATTG 1 cut(s) 1839
MflI RGATCY 9 cut(s) 724, 1027, 1365, 1926, 1951, 2316, 2527, 2582, 2941
MhlI GDGCHC 5 cut(s) 1219, 1521, 2797, 2833, 3106
MlsI TGGCCA 1 cut(s) 1589
MluNI TGGCCA 1 cut(s) 1589
Mly113I GGCGCC 1 cut(s) 166
MlyI GAGTC 5 cut(s) 106, 224, 1721, 1979, 2096
MmeI TCCRAC 3 cut(s) 249, 2190, 2403
Mox20I TGGCCA 1 cut(s) 1589
MroXI GAANNNNTTC 1 cut(s) 726
MscI TGGCCA 1 cut(s) 1589
MseI TTAA 8 cut(s) 567, 741, 870, 1038, 1095, 1160, 2813, 3072
MslI CAYNNNNRTG 7 cut(s) 840, 851, 965, 1127, 1222, 1667, 2487
Msp20I TGGCCA 1 cut(s) 1589
MspA1I CMGCKG 1 cut(s) 2377
MspI CCGG 3 cut(s) 645, 2308, 2653
MspR9I CCNGG 9 cut(s) 182, 244, 1470, 2324, 2343, 2538, 2653, 2654, 2675
MunI CAATTG 1 cut(s) 1839
Mva1269I GAATGC 2 cut(s) 1551, 2081
MvaI CCWGG 7 cut(s) 182, 244, 1470, 2324, 2343, 2538, 2675
NarI GGCGCC 1 cut(s) 166
NciI CCSGG 2 cut(s) 2653, 2654
NcoI CCATGG 1 cut(s) 1361
NdeI CATATG 1 cut(s) 2626
NheI GCTAGC 1 cut(s) 2822
NlaIV GGNNCC 8 cut(s) 104, 167, 579, 1218, 1300, 1474, 1953, 2529
NmeAIII GCCGAG 1 cut(s) 883
NmuCI GTSAC 1 cut(s) 842
NsbI TGCGCA 1 cut(s) 441
NspI RCATGY 3 cut(s) 2422, 2476, 3043
NspV TTCGAA 1 cut(s) 2776
OliI CACNNNNGTG 1 cut(s) 851
PceI AGGCCT 1 cut(s) 43
PciI ACATGT 1 cut(s) 2472
PciSI GCTCTTC 1 cut(s) 1746
PcsI WCGNNNNNNNCGW 1 cut(s) 2824
PctI GAATGC 2 cut(s) 1551, 2081
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 9 cut(s) 620, 689, 1145, 1732, 1988, 2153, 2284, 2389, 3002
PflMI CCANNNNNTGG 1 cut(s) 1469
PfoI TCCNGGA 2 cut(s) 1468, 2673
PinAI ACCGGT 1 cut(s) 2307
PleI GAGTC 5 cut(s) 106, 224, 1721, 1978, 2095
PluTI GGCGCC 1 cut(s) 169
PpsI GAGTC 5 cut(s) 106, 224, 1721, 1978, 2095
PpuMI RGGWCCY 1 cut(s) 102
PscI ACATGT 1 cut(s) 2472
Psp124BI GAGCTC 1 cut(s) 1521
Psp5II RGGWCCY 1 cut(s) 102
Psp6I CCWGG 7 cut(s) 180, 242, 1468, 2322, 2341, 2536, 2673
PspGI CCWGG 7 cut(s) 180, 242, 1468, 2322, 2341, 2536, 2673
PspN4I GGNNCC 8 cut(s) 104, 167, 579, 1218, 1300, 1474, 1953, 2529
PspPI GGNCC 8 cut(s) 102, 521, 578, 926, 1132, 2305, 2968, 2993
PspPPI RGGWCCY 1 cut(s) 102
PstNI CAGNNNCTG 3 cut(s) 1469, 1877, 2249
PsuI RGATCY 9 cut(s) 724, 1027, 1365, 1926, 1951, 2316, 2527, 2582, 2941
PvuII CAGCTG 1 cut(s) 2377
RsaI GTAC 6 cut(s) 711, 1300, 1661, 1804, 2477, 2705
RsaNI GTAC 6 cut(s) 710, 1299, 1660, 1803, 2476, 2704
RseI CAYNNNNRTG 7 cut(s) 840, 851, 965, 1127, 1222, 1667, 2487
SacI GAGCTC 1 cut(s) 1521
SapI GCTCTTC 1 cut(s) 1746
SaqAI TTAA 8 cut(s) 567, 741, 870, 1038, 1095, 1160, 2813, 3072
Sau96I GGNCC 8 cut(s) 102, 521, 578, 926, 1132, 2305, 2968, 2993
SchI GAGTC 5 cut(s) 106, 224, 1721, 1979, 2096
ScrFI CCNGG 9 cut(s) 182, 244, 1470, 2324, 2343, 2538, 2653, 2654, 2675
SduI GDGCHC 5 cut(s) 1219, 1521, 2797, 2833, 3106
SexAI ACCWGGT 1 cut(s) 2536
SfcI CTRYAG 2 cut(s) 468, 885
SfoI GGCGCC 1 cut(s) 167
SfuI TTCGAA 1 cut(s) 2776
SinI GGWCC 5 cut(s) 102, 521, 926, 2305, 2968
SmaI CCCGGG 1 cut(s) 2654
SmiMI CAYNNNNRTG 7 cut(s) 840, 851, 965, 1127, 1222, 1667, 2487
SmlI CTYRAG 1 cut(s) 2519
SmoI CTYRAG 1 cut(s) 2519
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 9 cut(s) 254, 987, 1135, 1156, 1896, 1956, 2254, 2320, 3086
SspDI GGCGCC 1 cut(s) 165
SspI AATATT 1 cut(s) 1269
SspMI CTAG 7 cut(s) 99, 234, 486, 1568, 2265, 2786, 2823
SstI GAGCTC 1 cut(s) 1521
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 9 cut(s) 180, 242, 1468, 2322, 2341, 2536, 2651, 2652, 2673
StyI CCWWGG 2 cut(s) 573, 1361
TaaI ACNGT 6 cut(s) 362, 434, 1714, 2002, 2411, 2692
TaiI ACGT 2 cut(s) 2746, 2935
TaqI TCGA 5 cut(s) 1558, 1730, 2085, 2776, 3044
TatI WGTACW 3 cut(s) 709, 1659, 1802
TauI GCSGC 1 cut(s) 990
TfiI GAWTC 9 cut(s) 620, 689, 1145, 1732, 1988, 2153, 2284, 2389, 3002
Tru1I TTAA 8 cut(s) 567, 741, 870, 1038, 1095, 1160, 2813, 3072
Tru9I TTAA 8 cut(s) 567, 741, 870, 1038, 1095, 1160, 2813, 3072
TscAI CASTG 4 cut(s) 1448, 1780, 2007, 2877
TseFI GTSAC 1 cut(s) 842
TseI GCWGC 9 cut(s) 185, 251, 698, 2126, 2336, 2855, 2885, 2956, 3119
Tsp45I GTSAC 1 cut(s) 842
TspGWI ACGGA 1 cut(s) 2595
TspMI CCCGGG 1 cut(s) 2652
TspRI CASTG 4 cut(s) 1448, 1780, 2007, 2877
Van91I CCANNNNNTGG 1 cut(s) 1469
VneI GTGCAC 1 cut(s) 3102
VpaK11BI GGWCC 5 cut(s) 102, 521, 926, 2305, 2968
XapI RAATTY 7 cut(s) 1007, 1458, 1814, 2217, 2275, 2347, 2762
XbaI TCTAGA 1 cut(s) 233
XceI RCATGY 3 cut(s) 2422, 2476, 3043
XcmI CCANNNNNNNNNTGG 1 cut(s) 1700
XmaI CCCGGG 1 cut(s) 2652
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 7 cut(s) 99, 234, 486, 1568, 2265, 2786, 2823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.