Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001970

Physical Location & Seq

Genomic Coordinates Reverse (-)

12793343 .. 12796852

Gene Structure 3510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G013020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTATAAGAAAGGAGAGGAAGTAATTGCCAAGTACGCTACTCTGATTTACCAAGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAAGATCAATAAGCAGTTGCTCTACTTGGTCGGCAACATTGTTGAGATATTAGAAATGAATCCAGAAGATGAAGCCGAGGAAGATAGGGCAAACATTGATCTTGACTCACAAAGAAAGGGCAAGTGTGTTGTTTTGAAAACATCTACTCGTCAGATAGTAGTTCTATTGTACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

100

Amino Acids

11.78

Weight (kDa)

5.02

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05530
fragaria_vesca	FvH4_6g06600 FvH4_6g06600
prunus_persica	Prupe.6G320300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0110751 RchiOBHm_Chr3g0455801 RchiOBHm_Chr7g0231361 RchiOBHm_Chr7g0231371
rosa_laevigata	RLG00000002415 RLG00000011618 RLG00000019137 RLG00000025331
rosa_multiflora	Rmu_sc0001294.1_g000017 Rmu_sc0020335.1_g000004 Rmu_sc0023945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423470 Rroxscaffold_6G00423960
rosa_rugosa	Rorug03G0011200 Rorug03G0164200 Rorug03G0164300 Rorug03G0164300 Rorug03G0164300 Rorug05G0270100 Rorug07G0211600
rosa_samantha	Rh1AG219200 Rh1CG203300 Rh2CG295700 Rh2DG332600 Rh3AG069700 Rh3BG072300 Rh3CG070500 Rh3DG072900 Rh4AG071900 Rh4AG072700 Rh4AG075000 Rh4BG069800 Rh4CG078000 Rh7AG420300 Rh7CG440100
rosa_wichuraiana	Rw0G014490 Rw1G022930 Rw3G005640 Rw3G005990 Rw3G013020 Rw7G037120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	35, 296
AgsI	TTSAA	1 cut(s)	262
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	201
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bse8I	GATNNNNATC	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	201
BseJI	GATNNNNATC	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	129, 223
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	129, 223
BstKTI	GATC	2 cut(s)	132, 226
BstMBI	GATC	2 cut(s)	129, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	34, 295
CviJI	RGCY	2 cut(s)	82, 200
CviKI_1	RGCY	2 cut(s)	82, 200
CviQI	GTAC	2 cut(s)	34, 295
DpnI	GATC	2 cut(s)	131, 225
DpnII	GATC	2 cut(s)	129, 223
FaiI	YATR	2 cut(s)	6, 91
HinfI	GANTC	4 cut(s)	86, 112, 184, 230
Hpy188I	TCNGA	2 cut(s)	45, 279
Hpy188III	TCNNGA	3 cut(s)	116, 188, 227
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	129, 223
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	3 cut(s)	68, 101, 201
MalI	GATC	2 cut(s)	131, 225
MboI	GATC	2 cut(s)	129, 223
MboII	GAAGA	3 cut(s)	68, 203, 218
MluCI	AATT	2 cut(s)	24, 59
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	2 cut(s)	10, 196
MseI	TTAA	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	2 cut(s)	129, 223
NmeAIII	GCCGAG	1 cut(s)	226
PfeI	GAWTC	3 cut(s)	86, 112, 184
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
RsaI	GTAC	2 cut(s)	35, 296
RsaNI	GTAC	2 cut(s)	34, 295
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	129, 223
SchI	GAGTC	1 cut(s)	224
SetI	ASST	1 cut(s)	84
Sse9I	AATT	2 cut(s)	24, 59
TasI	AATT	2 cut(s)	24, 59
TfiI	GAWTC	3 cut(s)	86, 112, 184
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TspDTI	ATGAA	3 cut(s)	78, 197, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.