Rroxscaffold_6G00423960

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001970
Physical Location & Seq
Reverse (-)
45235591 .. 45239722
4132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423960.1

Sequence Viewer

Length: 1275 bp
ATGGCGACCAATATGGTGGTCGAGGACACGAGCTTCGAGGACGATCAGCTGGCCGCGATGACCACCGACGATATTGTCAGAGCCACTCGTCTTCTCGACAACGAGATCCGAATTCTCAAGGAAGAATTGCAAAGAACAAATTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAAGCTCAATAAGCAGTTGCCCTACCTGGTCGGCAACATTGTTGAGATATTAGAAATGAATCCAGAAGATGAAGCTGAGGAAGATGGGGCAAACATCGATCTTGACTCACAAAGAAAGGGCAAGTGTGTTGTTTTGAAAACATCTACTCGTCAGACAATCTTTCTGCCTGTTGTTGGGCTTGTTGACCCTGATAAATTAAAGCCTGGAGATCTTGTTGGTGTGAACAAAGATAGTTACCTAATCTTGGATACTCTGCCATCCGAGTATGATTCCCGAGTGAAGGCTATGGAGGTTGATGAGAAACCAACTGAAGATTACAATGATATTGGAGGGCTAGAGAAACAGATTCAAGAACTGGTTGAGGCAATTGTTTTACCCATGACCCACAAGGAGCGTTTTCAGAAATTAGGGGTTCGCCCACCAAAGGGAGTGCTTTTGTATGGACCTCCTGGAACTGGTAAAACTTTAATGGCCCGGGCTTGTGCTGCACAAACGAATGCCACTTTTCTGAAACTTGCAGGCCCACAACTGGTTCAGATGTTCATTGGGGATGGAGCAAAACTTGTTCGCGATGCCTTTCAACTTGCAAAAGAGAAATCTCCTTGCATCATTTTCATAGATGAAATTGATGCAATTGGCACAAAGCGGTTTGATAGCGAAGTGAGTGGTGATAGGGAGGTGCAGCGTACAATGCTTGAATTGCTTAATCAACTTGATGGCTTTAGTAGCGATGACCGGATCAAGGTGATAGCAGCGACAAATCGTGCTGACATCCTTGATCCTGCTCTTATGCGTTCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCTAGAGCTCGGATTCTGCAGATTCACTCTAGGAAGATGAATGTTCACCCGGACGTCAATTTTGAAGAATTAGCTCGCTCTACTGATGATTTCAATGGTGCACAACTAAAAGCAGTTTGTGTGGAGGCAGGCATGCTGGCCCTTCGCCGTGATGCAACTGAGGTAAACCACGAAGATTTCAATGAAGGTATTATACAAGTTCAAGCAAAGAAGAAGGCTAGCCTCAACTATTATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

424

Amino Acids

47.6

Weight (kDa)

4.98

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 74 - 150 3.8e-10 Proteasomal ATPase OB C-terminal domain
AAA_5 PF07728 207 - 327 1.9e-06 AAA domain (dynein-related subfamily)
AAA PF00004 208 - 340 4.9e-44 ATPase family associated with various cellular activities (AAA)
nSTAND3 PF20720 208 - 355 6.5e-07 Novel STAND NTPase 3
AAA_lid_3 PF17862 363 - 407 5.2e-15 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AatII GACGTC 1 cut(s) 1092
AccII CGCG 2 cut(s) 56, 762
AciI CCGC 2 cut(s) 54, 838
AclWI GGATC 4 cut(s) 100, 938, 965, 1008
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 2 cut(s) 111, 139
AcuI CTGAAG 2 cut(s) 522, 1050
AcyI GRCGYC 1 cut(s) 1089
AfaI GTAC 1 cut(s) 880
AfiI CCNNNNNNNGG 8 cut(s) 365, 436, 472, 616, 617, 647, 721, 934
AgsI TTSAA 8 cut(s) 328, 542, 773, 890, 1100, 1129, 1216, 1238
AjnI CCWGG 3 cut(s) 216, 394, 640
AluBI AGCT 8 cut(s) 33, 49, 148, 196, 266, 1037, 1043, 1109
AluI AGCT 8 cut(s) 33, 49, 148, 196, 266, 1037, 1043, 1109
Alw21I GWGCWC 2 cut(s) 1045, 1138
Alw44I GTGCAC 1 cut(s) 1134
AlwI GGATC 4 cut(s) 100, 938, 965, 1008
Ama87I CYCGRG 2 cut(s) 465, 666
AoxI GGCC 4 cut(s) 51, 663, 712, 1173
ApaLI GTGCAC 1 cut(s) 1134
ApeKI GCWGC 3 cut(s) 677, 874, 944
ApoI RAATTY 2 cut(s) 111, 139
ArsI GACNNNNNNTTYG 4 cut(s) 17, 49, 1079, 1111
AspS9I GGNCC 4 cut(s) 635, 664, 713, 1174
AsuC2I CCSGG 3 cut(s) 667, 668, 1085
AsuHPI GGTGA 3 cut(s) 872, 949, 1073
AsuNHI GCTAGC 1 cut(s) 1253
AvaI CYCGRG 2 cut(s) 465, 666
AvaII GGWCC 1 cut(s) 635
BaeGI GKGCMC 1 cut(s) 1138
BanII GRGCYC 1 cut(s) 1045
BarI GAAGNNNNNNTAC 2 cut(s) 1212, 1244
BauI CACGAG 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 2 cut(s) 1045, 1138
BbvCI CCTCAGC 1 cut(s) 267
BbvI GCAGC 3 cut(s) 664, 886, 956
BccI CCATC 4 cut(s) 269, 457, 737, 902
BceAI ACGGC 1 cut(s) 1167
BciT130I CCWGG 3 cut(s) 218, 396, 642
BciVI GTATCC 1 cut(s) 433
BcnI CCSGG 3 cut(s) 667, 668, 1085
BfaI CTAG 4 cut(s) 527, 1038, 1065, 1254
BfmI CTRYAG 1 cut(s) 1052
BfuI GTATCC 1 cut(s) 433
BglII AGATCT 1 cut(s) 400
BisI GCNGC 4 cut(s) 54, 678, 875, 945
BlsI GCNGC 4 cut(s) 55, 679, 876, 946
Bme1390I CCNGG 6 cut(s) 218, 396, 642, 667, 668, 1085
Bme18I GGWCC 1 cut(s) 635
BmeT110I CYCGRG 2 cut(s) 465, 666
BmgT120I GGNCC 4 cut(s) 635, 664, 713, 1174
BmrFI CCNGG 6 cut(s) 218, 396, 642, 667, 668, 1085
BmsI GCATC 4 cut(s) 754, 807, 811, 1177
BmtI GCTAGC 1 cut(s) 1257
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 417
Bpu10I CCTNAGC 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 3 cut(s) 667, 668, 1085
Bsa29I ATCGAT 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 1089
BsaJI CCNNGG 1 cut(s) 666
BsaWI WCCGGW 1 cut(s) 927
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 8 cut(s) 365, 436, 472, 616, 617, 647, 721, 934
Bse1I ACTGG 3 cut(s) 552, 652, 726
BseBI CCWGG 3 cut(s) 218, 396, 642
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 666
BseGI GGATG 4 cut(s) 449, 748, 963, 1021
BseLI CCNNNNNNNGG 8 cut(s) 365, 436, 472, 616, 617, 647, 721, 934
BseMII CTCAG 2 cut(s) 258, 1185
BseNI ACTGG 3 cut(s) 552, 652, 726
BseSI GKGCMC 1 cut(s) 1138
BseXI GCAGC 3 cut(s) 664, 886, 956
BsgI GTGCAG 2 cut(s) 663, 893
Bsh1236I CGCG 2 cut(s) 56, 762
BshFI GGCC 4 cut(s) 53, 665, 714, 1175
BshVI ATCGAT 1 cut(s) 288
BsiHKAI GWGCWC 2 cut(s) 1045, 1138
BsiHKCI CYCGRG 2 cut(s) 465, 666
BsiSI CCGG 3 cut(s) 667, 928, 1085
BslI CCNNNNNNNGG 8 cut(s) 365, 436, 472, 616, 617, 647, 721, 934
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 4 cut(s) 53, 665, 714, 1175
BsoBI CYCGRG 2 cut(s) 465, 666
Bsp1286I GDGCHC 2 cut(s) 1045, 1138
Bsp143I GATC 7 cut(s) 43, 105, 289, 400, 930, 970, 1000
Bsp68I TCGCGA 1 cut(s) 762
BspACI CCGC 2 cut(s) 54, 838
BspANI GGCC 4 cut(s) 53, 665, 714, 1175
BspCNI CTCAG 2 cut(s) 259, 1186
BspDI ATCGAT 1 cut(s) 288
BspFNI CGCG 2 cut(s) 56, 762
BspMAI CTGCAG 1 cut(s) 1056
BspOI GCTAGC 1 cut(s) 1257
BspPI GGATC 4 cut(s) 100, 938, 965, 1008
BsrI ACTGG 3 cut(s) 552, 652, 726
BssECI CCNNGG 1 cut(s) 666
BssMI GATC 7 cut(s) 43, 105, 289, 400, 930, 970, 1000
BssNI GRCGYC 1 cut(s) 1089
BssSI CACGAG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 28
Bst2UI CCWGG 3 cut(s) 218, 396, 642
BstACI GRCGYC 1 cut(s) 1089
BstC8I GCNNGC 7 cut(s) 51, 712, 1111, 1165, 1169, 1173, 1255
BstDEI CTNAG 2 cut(s) 267, 1194
BstF5I GGATG 4 cut(s) 449, 748, 963, 1021
BstFNI CGCG 2 cut(s) 56, 762
BstKTI GATC 7 cut(s) 46, 108, 292, 403, 933, 973, 1003
BstMBI GATC 7 cut(s) 43, 105, 289, 400, 930, 970, 1000
BstMWI GCNNNNNNNGC 5 cut(s) 202, 677, 883, 892, 918
BstNI CCWGG 3 cut(s) 218, 396, 642
BstNSI RCATGY 1 cut(s) 1171
BstSCI CCNGG 6 cut(s) 216, 394, 640, 665, 666, 1083
BstSFI CTRYAG 1 cut(s) 1052
BstSLI GKGCMC 1 cut(s) 1138
BstUI CGCG 2 cut(s) 56, 762
BstV1I GCAGC 3 cut(s) 664, 886, 956
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 105, 400
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 2 cut(s) 105, 400
Bsu15I ATCGAT 1 cut(s) 288
BsuI GTATCC 1 cut(s) 433
BsuRI GGCC 4 cut(s) 53, 665, 714, 1175
BsuTUI ATCGAT 1 cut(s) 288
BtgZI GCGATG 3 cut(s) 71, 777, 936
BtsCI GGATG 4 cut(s) 449, 748, 963, 1021
BtsIMutI CAGTG 1 cut(s) 1026
BtuMI TCGCGA 1 cut(s) 762
Cac8I GCNNGC 7 cut(s) 51, 712, 1111, 1165, 1169, 1173, 1255
Cfr13I GGNCC 4 cut(s) 635, 664, 713, 1174
Cfr9I CCCGGG 1 cut(s) 666
ClaI ATCGAT 1 cut(s) 288
CsiI ACCWGGT 1 cut(s) 216
Csp6I GTAC 1 cut(s) 879
CviAII CATG 2 cut(s) 571, 1168
CviQI GTAC 1 cut(s) 879
DdeI CTNAG 2 cut(s) 267, 1194
DpnI GATC 7 cut(s) 45, 107, 291, 402, 932, 972, 1002
DpnII GATC 7 cut(s) 43, 105, 289, 400, 930, 970, 1000
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 1043
Eco24I GRGCYC 1 cut(s) 1045
Eco47I GGWCC 1 cut(s) 635
Eco53kI GAGCTC 1 cut(s) 1043
Eco57I CTGAAG 2 cut(s) 522, 1050
Eco88I CYCGRG 2 cut(s) 465, 666
EcoICRI GAGCTC 1 cut(s) 1043
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 3 cut(s) 216, 394, 640
EcoT22I ATGCAT 1 cut(s) 1273
EcoT38I GRGCYC 1 cut(s) 1045
FaeI CATG 2 cut(s) 574, 1171
FatI CATG 2 cut(s) 570, 1167
Fnu4HI GCNGC 4 cut(s) 54, 678, 875, 945
FokI GGATG 4 cut(s) 436, 755, 950, 1008
FriOI GRGCYC 1 cut(s) 1045
Fsp4HI GCNGC 4 cut(s) 54, 678, 875, 945
FspBI CTAG 4 cut(s) 527, 1038, 1065, 1254
GluI GCNGC 4 cut(s) 54, 678, 875, 945
GsuI CTGGAG 1 cut(s) 417
HaeIII GGCC 4 cut(s) 53, 665, 714, 1175
HapII CCGG 3 cut(s) 667, 928, 1085
Hin1I GRCGYC 1 cut(s) 1089
Hin1II CATG 2 cut(s) 574, 1171
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 8 cut(s) 152, 178, 250, 296, 461, 538, 1048, 1057
HpaII CCGG 3 cut(s) 667, 928, 1085
HphI GGTGA 3 cut(s) 872, 949, 1073
Hpy166II GTNNAC 5 cut(s) 376, 415, 1081, 1136, 1201
Hpy188I TCNGA 8 cut(s) 80, 110, 345, 454, 594, 702, 729, 1047
Hpy188III TCNNGA 7 cut(s) 95, 182, 254, 293, 465, 542, 761
Hpy8I GTNNAC 5 cut(s) 376, 415, 1081, 1136, 1201
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 4 cut(s) 466, 1187, 1214, 1243
HpyCH4IV ACGT 1 cut(s) 1089
HpyF10VI GCNNNNNNNGC 5 cut(s) 202, 677, 883, 892, 918
HpyF3I CTNAG 2 cut(s) 267, 1194
HpySE526I ACGT 1 cut(s) 1089
Hsp92I GRCGYC 1 cut(s) 1089
Hsp92II CATG 2 cut(s) 574, 1171
Kzo9I GATC 7 cut(s) 43, 105, 289, 400, 930, 970, 1000
LmnI GCTCC 3 cut(s) 145, 583, 746
Lsp1109I GCAGC 3 cut(s) 664, 886, 956
LweI GCATC 4 cut(s) 754, 807, 811, 1177
MabI ACCWGGT 1 cut(s) 216
MaeI CTAG 4 cut(s) 527, 1038, 1065, 1254
MaeII ACGT 1 cut(s) 1089
MaeIII GTNAC 1 cut(s) 425
MalI GATC 7 cut(s) 45, 107, 291, 402, 932, 972, 1002
MboI GATC 7 cut(s) 43, 105, 289, 400, 930, 970, 1000
MfeI CAATTG 2 cut(s) 558, 825
MflI RGATCY 2 cut(s) 105, 400
MhlI GDGCHC 2 cut(s) 1045, 1138
MlyI GAGTC 1 cut(s) 290
Mph1103I ATGCAT 1 cut(s) 1273
MseI TTAA 4 cut(s) 192, 389, 659, 897
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 3 cut(s) 667, 928, 1085
MspR9I CCNGG 6 cut(s) 218, 396, 642, 667, 668, 1085
MunI CAATTG 2 cut(s) 558, 825
Mva1269I GAATGC 1 cut(s) 694
MvaI CCWGG 3 cut(s) 218, 396, 642
MvnI CGCG 2 cut(s) 56, 762
MwoI GCNNNNNNNGC 5 cut(s) 202, 677, 883, 892, 918
NciI CCSGG 3 cut(s) 667, 668, 1085
NdeII GATC 7 cut(s) 43, 105, 289, 400, 930, 970, 1000
NheI GCTAGC 1 cut(s) 1253
NlaIII CATG 2 cut(s) 574, 1171
NruI TCGCGA 1 cut(s) 762
NsiI ATGCAT 1 cut(s) 1273
NspI RCATGY 1 cut(s) 1171
PaeI GCATGC 1 cut(s) 1171
PcsI WCGNNNNNNNCGW 1 cut(s) 1000
PctI GAATGC 1 cut(s) 694
PfeI GAWTC 7 cut(s) 152, 178, 250, 461, 538, 1048, 1057
PfoI TCCNGGA 1 cut(s) 640
PkrI GCNGC 4 cut(s) 55, 679, 876, 946
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
Psp124BI GAGCTC 1 cut(s) 1045
Psp6I CCWGG 3 cut(s) 216, 394, 640
PspGI CCWGG 3 cut(s) 216, 394, 640
PspPI GGNCC 4 cut(s) 635, 664, 713, 1174
PstI CTGCAG 1 cut(s) 1056
PsuI RGATCY 2 cut(s) 105, 400
PvuII CAGCTG 1 cut(s) 49
RruI TCGCGA 1 cut(s) 762
RsaI GTAC 1 cut(s) 880
RsaNI GTAC 1 cut(s) 879
SacI GAGCTC 1 cut(s) 1045
SaqAI TTAA 4 cut(s) 192, 389, 659, 897
SatI GCNGC 4 cut(s) 54, 678, 875, 945
Sau3AI GATC 7 cut(s) 43, 105, 289, 400, 930, 970, 1000
Sau96I GGNCC 4 cut(s) 635, 664, 713, 1174
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 6 cut(s) 218, 396, 642, 667, 668, 1085
SduI GDGCHC 2 cut(s) 1045, 1138
SexAI ACCWGGT 1 cut(s) 216
SfaNI GCATC 4 cut(s) 754, 807, 811, 1177
SfcI CTRYAG 1 cut(s) 1052
SinI GGWCC 1 cut(s) 635
SmaI CCCGGG 1 cut(s) 668
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SphI GCATGC 1 cut(s) 1171
SrfI GCCCGGGC 1 cut(s) 668
SsiI CCGC 2 cut(s) 54, 838
SspMI CTAG 4 cut(s) 527, 1038, 1065, 1254
SstI GAGCTC 1 cut(s) 1045
StyD4I CCNGG 6 cut(s) 216, 394, 640, 665, 666, 1083
TaiI ACGT 1 cut(s) 1092
TaqI TCGA 5 cut(s) 21, 36, 96, 288, 994
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 7 cut(s) 152, 178, 250, 461, 538, 1048, 1057
Tru1I TTAA 4 cut(s) 192, 389, 659, 897
Tru9I TTAA 4 cut(s) 192, 389, 659, 897
TscAI CASTG 1 cut(s) 1033
TseI GCWGC 3 cut(s) 677, 874, 944
TspDTI ATGAA 8 cut(s) 144, 263, 276, 724, 796, 828, 1088, 1233
TspMI CCCGGG 1 cut(s) 666
TspRI CASTG 1 cut(s) 1033
VneI GTGCAC 1 cut(s) 1134
VpaK11BI GGWCC 1 cut(s) 635
XapI RAATTY 2 cut(s) 111, 139
XceI RCATGY 1 cut(s) 1171
XmaI CCCGGG 1 cut(s) 666
XspI CTAG 4 cut(s) 527, 1038, 1065, 1254
ZraI GACGTC 1 cut(s) 1090
Zsp2I ATGCAT 1 cut(s) 1273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.