AT3G05530

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001970
Physical Location & Seq
Forward (+)
1603359 .. 1606243
2885 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05530.1

Sequence Viewer

Length: 1275 bp
ATGGCAACTCCTATGGTTGAAGATACGTCAAGCTTCGAAGAGGATCAGCTTGCTTCCATGTCCACCGAAGATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTGGTGACTTGGTTGGAGTTAACAAAGATAGCTACTTGATTTTGGATACCTTGCCATCCGAGTATGACTCTAGGGTTAAAGCCATGGAGGTCGATGAAAAACCAACTGAAGATTACAATGACATTGGAGGACTAGAGAAGCAGATCCAAGAGCTTGTAGAGGCAATTGTGCTTCCCATGACGCACAAGGAACGTTTTGAGAAGCTGGGTGTTCGTCCACCAAAGGGAGTGCTCTTGTATGGTCCCCCAGGGACTGGTAAAACTTTAATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAGGCCCTCAATTGGTCCAGATGTTCATTGGAGACGGAGCAAAGCTTGTCCGTGATGCCTTTCAACTTGCCAAAGAGAAAGCTCCGTGCATTATCTTCATAGATGAAATCGATGCCATTGGTACAAAGCGTTTCGACAGTGAAGTCAGCGGAGACAGGGAAGTGCAGAGGACTATGTTGGAGTTGCTCAATCAACTTGACGGATTCAGTAGCGATGAACGTATTAAGGTGATTGCAGCTACTAACCGTGCAGATATTCTGGACCCAGCACTCATGCGTTCTGGTCGATTAGACAGAAAGATTGAGTTCCCACACCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAGATTCACTCAAGGAAGATGAATGTCCACCCAGACGTCAACTTTGAGGAGCTTGCACGATCAACAGATGATTTCAATGGAGCTCAGCTGAAAGCAGTGTGTGTAGAGGCAGGCATGTTAGCTCTTCGCCGTGATGCCACAGAGGTGAACCATGAAGACTTCAATGAAGGTATCATCCAAGTCCAGGCCAAGAAGAAAGCAAGCTTGAACTACTACGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

424

Amino Acids

47.48

Weight (kDa)

4.91

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 74 - 150 1.3e-09 Proteasomal ATPase OB C-terminal domain
AAA_5 PF07728 207 - 327 4.2e-06 AAA domain (dynein-related subfamily)
AAA PF00004 208 - 340 3.8e-44 ATPase family associated with various cellular activities (AAA)
nSTAND3 PF20720 208 - 355 7.1e-07 Novel STAND NTPase 3
AAA_lid_3 PF17862 363 - 407 5.2e-15 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 851
AatII GACGTC 1 cut(s) 1092
Acc16I TGCGCA 1 cut(s) 676
AccB7I CCANNNNNTGG 2 cut(s) 365, 647
AccI GTMKAC 1 cut(s) 335
AccII CGCG 1 cut(s) 128
AciI CCGC 1 cut(s) 858
AclI AACGTT 1 cut(s) 586
AclWI GGATC 4 cut(s) 51, 371, 384, 532
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 522
AcyI GRCGYC 1 cut(s) 1089
AfaI GTAC 1 cut(s) 832
AfiI CCNNNNNNNGG 6 cut(s) 365, 617, 647, 706, 721, 1237
AgsI TTSAA 7 cut(s) 20, 328, 391, 773, 1129, 1216, 1261
AjnI CCWGG 3 cut(s) 394, 640, 1236
AjuI GAANNNNNNNTTGG 2 cut(s) 680, 712
AleI CACNNNNGTG 1 cut(s) 1196
Alw21I GWGCWC 2 cut(s) 627, 1138
Alw26I GTCTC 2 cut(s) 735, 855
AlwI GGATC 4 cut(s) 51, 371, 384, 532
AlwNI CAGNNNCTG 1 cut(s) 647
AoxI GGCC 2 cut(s) 712, 1239
ApeKI GCWGC 4 cut(s) 205, 208, 677, 944
ApoI RAATTY 1 cut(s) 111
ArsI GACNNNNNNTTYG 2 cut(s) 1079, 1111
AspLEI GCGC 2 cut(s) 130, 677
AspS9I GGNCC 4 cut(s) 635, 713, 724, 970
AsuHPI GGTGA 3 cut(s) 410, 949, 1210
AsuII TTCGAA 2 cut(s) 36, 109
AvaII GGWCC 3 cut(s) 635, 724, 970
BamHI GGATCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 1138
BauI CACGAG 2 cut(s) 371, 666
BbsI GAAGAC 3 cut(s) 83, 129, 1215
Bbv12I GWGCWC 2 cut(s) 627, 1138
BbvCI CCTCAGC 1 cut(s) 267
BbvI GCAGC 4 cut(s) 195, 217, 689, 956
BccI CCATC 3 cut(s) 269, 356, 457
BceAI ACGGC 2 cut(s) 356, 1167
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BciT130I CCWGG 3 cut(s) 396, 642, 1238
BciVI GTATCC 1 cut(s) 433
BcoDI GTCTC 2 cut(s) 735, 855
BfaI CTAG 4 cut(s) 78, 143, 465, 527
BfuI GTATCC 1 cut(s) 433
BisI GCNGC 4 cut(s) 206, 209, 678, 945
BlpI GCTNAGC 1 cut(s) 1137
BlsI GCNGC 4 cut(s) 207, 210, 679, 946
Bme1390I CCNGG 3 cut(s) 396, 642, 1238
Bme18I GGWCC 3 cut(s) 635, 724, 970
BmgT120I GGNCC 4 cut(s) 635, 713, 724, 970
BmiI GGNNCC 3 cut(s) 378, 637, 972
BmrFI CCNGG 3 cut(s) 396, 642, 1238
BmsI GCATC 4 cut(s) 253, 754, 811, 1177
BpiI GAAGAC 3 cut(s) 83, 129, 1215
BplI GAGNNNNNCTC 2 cut(s) 446, 478
Bpu10I CCTNAGC 1 cut(s) 267
Bpu1102I GCTNAGC 1 cut(s) 1137
Bpu14I TTCGAA 2 cut(s) 36, 109
BpuEI CTTGAG 2 cut(s) 101, 1048
Bsa29I ATCGAT 1 cut(s) 819
BsaHI GRCGYC 1 cut(s) 1089
BsaJI CCNNGG 3 cut(s) 477, 640, 641
Bsc4I CCNNNNNNNGG 6 cut(s) 365, 617, 647, 706, 721, 1237
Bse1I ACTGG 2 cut(s) 359, 652
BseBI CCWGG 3 cut(s) 396, 642, 1238
BseCI ATCGAT 1 cut(s) 819
BseDI CCNNGG 3 cut(s) 477, 640, 641
BseGI GGATG 2 cut(s) 449, 1227
BseLI CCNNNNNNNGG 6 cut(s) 365, 617, 647, 706, 721, 1237
BseMII CTCAG 2 cut(s) 258, 1151
BseNI ACTGG 2 cut(s) 359, 652
BseRI GAGGAG 1 cut(s) 1115
BseXI GCAGC 4 cut(s) 195, 217, 689, 956
BseYI CCCAGC 2 cut(s) 598, 973
BsgI GTGCAG 2 cut(s) 893, 978
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 2 cut(s) 714, 1241
BshVI ATCGAT 1 cut(s) 819
BsiHKAI GWGCWC 2 cut(s) 627, 1138
BslFI GGGAC 2 cut(s) 621, 658
BslI CCNNNNNNNGG 6 cut(s) 365, 617, 647, 706, 721, 1237
BsmAI GTCTC 2 cut(s) 735, 855
BsmBI CGTCTC 1 cut(s) 735
BsmFI GGGAC 2 cut(s) 621, 658
BsnI GGCC 2 cut(s) 714, 1241
Bsp119I TTCGAA 2 cut(s) 36, 109
Bsp1286I GDGCHC 2 cut(s) 627, 1138
Bsp143I GATC 5 cut(s) 43, 289, 376, 537, 1112
Bsp1720I GCTNAGC 1 cut(s) 1137
Bsp19I CCATGG 1 cut(s) 477
BspACI CCGC 1 cut(s) 858
BspANI GGCC 2 cut(s) 714, 1241
BspCNI CTCAG 2 cut(s) 259, 1150
BspDI ATCGAT 1 cut(s) 819
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 3 cut(s) 378, 637, 972
BspPI GGATC 4 cut(s) 51, 371, 384, 532
BspQI GCTCTTC 1 cut(s) 1182
BspT104I TTCGAA 2 cut(s) 36, 109
BsrI ACTGG 2 cut(s) 359, 652
BssECI CCNNGG 3 cut(s) 477, 640, 641
BssMI GATC 5 cut(s) 43, 289, 376, 537, 1112
BssNI GRCGYC 1 cut(s) 1089
BssSI CACGAG 2 cut(s) 371, 666
BssT1I CCWWGG 1 cut(s) 477
Bst2BI CACGAG 2 cut(s) 371, 666
Bst2UI CCWGG 3 cut(s) 396, 642, 1238
Bst4CI ACNGT 2 cut(s) 848, 956
Bst6I CTCTTC 2 cut(s) 33, 1182
BstACI GRCGYC 1 cut(s) 1089
BstBI TTCGAA 2 cut(s) 36, 109
BstC8I GCNNGC 6 cut(s) 51, 673, 712, 1107, 1165, 1255
BstDEI CTNAG 2 cut(s) 267, 1137
BstDSI CCRYGG 1 cut(s) 477
BstF5I GGATG 2 cut(s) 449, 1227
BstFNI CGCG 1 cut(s) 128
BstHHI GCGC 2 cut(s) 130, 677
BstKTI GATC 5 cut(s) 46, 292, 379, 540, 1115
BstMAI GTCTC 2 cut(s) 735, 855
BstMBI GATC 5 cut(s) 43, 289, 376, 537, 1112
BstMWI GCNNNNNNNGC 1 cut(s) 677
BstNI CCWGG 3 cut(s) 396, 642, 1238
BstNSI RCATGY 1 cut(s) 1171
BstSCI CCNGG 3 cut(s) 394, 640, 1236
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 4 cut(s) 195, 217, 689, 956
BstV2I GAAGAC 3 cut(s) 83, 129, 1215
BstX2I RGATCY 2 cut(s) 376, 537
BstYI RGATCY 2 cut(s) 376, 537
Bsu15I ATCGAT 1 cut(s) 819
BsuI GTATCC 1 cut(s) 433
BsuRI GGCC 2 cut(s) 714, 1241
BsuTUI ATCGAT 1 cut(s) 819
BtgI CCRYGG 1 cut(s) 477
BtgZI GCGATG 1 cut(s) 936
BtsCI GGATG 2 cut(s) 449, 1227
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 2 cut(s) 853, 1155
Cac8I GCNNGC 6 cut(s) 51, 673, 712, 1107, 1165, 1255
CaiI CAGNNNCTG 1 cut(s) 647
CfoI GCGC 2 cut(s) 130, 677
Cfr13I GGNCC 4 cut(s) 635, 713, 724, 970
ClaI ATCGAT 1 cut(s) 819
CseI GACGC 2 cut(s) 134, 583
CsiI ACCWGGT 1 cut(s) 394
Csp6I GTAC 1 cut(s) 831
CviAII CATG 6 cut(s) 58, 478, 571, 982, 1168, 1205
CviQI GTAC 1 cut(s) 831
DdeI CTNAG 2 cut(s) 267, 1137
DpnI GATC 5 cut(s) 45, 291, 378, 539, 1114
DpnII GATC 5 cut(s) 43, 289, 376, 537, 1112
DrdI GACNNNNNNGTC 1 cut(s) 851
DseDI GACNNNNNNGTC 1 cut(s) 851
Eam1104I CTCTTC 2 cut(s) 33, 1182
EarI CTCTTC 2 cut(s) 33, 1182
Ecl136II GAGCTC 1 cut(s) 1136
Eco130I CCWWGG 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 1138
Eco32I GATATC 1 cut(s) 73
Eco47I GGWCC 3 cut(s) 635, 724, 970
Eco53kI GAGCTC 1 cut(s) 1136
Eco57I CTGAAG 1 cut(s) 522
EcoICRI GAGCTC 1 cut(s) 1136
EcoO109I RGGNCCY 1 cut(s) 713
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 3 cut(s) 394, 640, 1236
EcoRV GATATC 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 477
EcoT38I GRGCYC 1 cut(s) 1138
ErhI CCWWGG 1 cut(s) 477
Esp3I CGTCTC 1 cut(s) 735
FaeI CATG 6 cut(s) 61, 481, 574, 985, 1171, 1208
FaqI GGGAC 2 cut(s) 621, 658
FatI CATG 6 cut(s) 57, 477, 570, 981, 1167, 1204
FblI GTMKAC 1 cut(s) 335
Fnu4HI GCNGC 4 cut(s) 206, 209, 678, 945
FokI GGATG 2 cut(s) 436, 1214
FriOI GRGCYC 1 cut(s) 1138
Fsp4HI GCNGC 4 cut(s) 206, 209, 678, 945
FspBI CTAG 4 cut(s) 78, 143, 465, 527
FspI TGCGCA 1 cut(s) 676
GlaI GCGC 2 cut(s) 129, 676
GluI GCNGC 4 cut(s) 206, 209, 678, 945
GsaI CCCAGC 2 cut(s) 602, 977
HaeIII GGCC 2 cut(s) 714, 1241
HgaI GACGC 2 cut(s) 134, 583
HhaI GCGC 2 cut(s) 130, 677
Hin1I GRCGYC 1 cut(s) 1089
Hin1II CATG 6 cut(s) 61, 481, 574, 985, 1171, 1208
Hin6I GCGC 2 cut(s) 128, 675
HinP1I GCGC 2 cut(s) 128, 675
HincII GTYRAC 2 cut(s) 415, 1093
HindII GTYRAC 2 cut(s) 415, 1093
HindIII AAGCTT 3 cut(s) 31, 752, 1255
HpaI GTTAAC 1 cut(s) 415
HphI GGTGA 3 cut(s) 410, 949, 1210
Hpy166II GTNNAC 7 cut(s) 63, 336, 415, 611, 1081, 1093, 1201
Hpy188I TCNGA 1 cut(s) 454
Hpy188III TCNNGA 9 cut(s) 95, 143, 182, 235, 254, 293, 380, 727, 968
Hpy8I GTNNAC 7 cut(s) 63, 336, 415, 611, 1081, 1093, 1201
HpyAV CCTTC 2 cut(s) 706, 1214
HpyCH4III ACNGT 2 cut(s) 848, 956
HpyCH4IV ACGT 5 cut(s) 26, 332, 586, 928, 1089
HpyCH4V TGCA 7 cut(s) 281, 798, 874, 944, 959, 1054, 1109
HpyF10VI GCNNNNNNNGC 1 cut(s) 677
HpyF3I CTNAG 2 cut(s) 267, 1137
HpySE526I ACGT 5 cut(s) 26, 332, 586, 928, 1089
Hsp92I GRCGYC 1 cut(s) 1089
Hsp92II CATG 6 cut(s) 61, 481, 574, 985, 1171, 1208
HspAI GCGC 2 cut(s) 128, 675
KspAI GTTAAC 1 cut(s) 415
Kzo9I GATC 5 cut(s) 43, 289, 376, 537, 1112
LguI GCTCTTC 1 cut(s) 1182
LmnI GCTCC 4 cut(s) 746, 796, 1102, 1133
Lsp1109I GCAGC 4 cut(s) 195, 217, 689, 956
LweI GCATC 4 cut(s) 253, 754, 811, 1177
MabI ACCWGGT 1 cut(s) 394
MaeI CTAG 4 cut(s) 78, 143, 465, 527
MaeII ACGT 5 cut(s) 26, 332, 586, 928, 1089
MaeIII GTNAC 1 cut(s) 398
MalI GATC 5 cut(s) 45, 291, 378, 539, 1114
MboI GATC 5 cut(s) 43, 289, 376, 537, 1112
MfeI CAATTG 2 cut(s) 558, 719
MflI RGATCY 2 cut(s) 376, 537
MhlI GDGCHC 2 cut(s) 627, 1138
MluCI AATT 4 cut(s) 111, 558, 704, 719
MlyI GAGTC 3 cut(s) 290, 363, 455
MmeI TCCRAC 3 cut(s) 346, 388, 867
MseI TTAA 7 cut(s) 171, 192, 414, 471, 659, 702, 933
MslI CAYNNNNRTG 1 cut(s) 1196
MspA1I CMGCKG 3 cut(s) 208, 858, 1141
MspR9I CCNGG 3 cut(s) 396, 642, 1238
MunI CAATTG 2 cut(s) 558, 719
MvaI CCWGG 3 cut(s) 396, 642, 1238
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 677
NcoI CCATGG 1 cut(s) 477
NdeII GATC 5 cut(s) 43, 289, 376, 537, 1112
NlaIII CATG 6 cut(s) 61, 481, 574, 985, 1171, 1208
NlaIV GGNNCC 3 cut(s) 378, 637, 972
NmuCI GTSAC 1 cut(s) 398
NsbI TGCGCA 1 cut(s) 676
NspI RCATGY 1 cut(s) 1171
NspV TTCGAA 2 cut(s) 36, 109
OliI CACNNNNGTG 1 cut(s) 1196
PasI CCCWGGG 1 cut(s) 641
PciSI GCTCTTC 1 cut(s) 1182
PfeI GAWTC 7 cut(s) 106, 152, 178, 250, 912, 1047, 1057
PflMI CCANNNNNTGG 2 cut(s) 365, 647
PkrI GCNGC 4 cut(s) 207, 210, 679, 946
PleI GAGTC 3 cut(s) 290, 363, 455
PpsI GAGTC 3 cut(s) 290, 363, 455
Psp124BI GAGCTC 1 cut(s) 1138
Psp1406I AACGTT 1 cut(s) 586
Psp6I CCWGG 3 cut(s) 394, 640, 1236
PspFI CCCAGC 2 cut(s) 598, 973
PspGI CCWGG 3 cut(s) 394, 640, 1236
PspN4I GGNNCC 3 cut(s) 378, 637, 972
PspPI GGNCC 4 cut(s) 635, 713, 724, 970
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 2 cut(s) 376, 537
PvuII CAGCTG 2 cut(s) 208, 1141
RsaI GTAC 1 cut(s) 832
RsaNI GTAC 1 cut(s) 831
RseI CAYNNNNRTG 1 cut(s) 1196
SacI GAGCTC 1 cut(s) 1138
SapI GCTCTTC 1 cut(s) 1182
SaqAI TTAA 7 cut(s) 171, 192, 414, 471, 659, 702, 933
SatI GCNGC 4 cut(s) 206, 209, 678, 945
Sau3AI GATC 5 cut(s) 43, 289, 376, 537, 1112
Sau96I GGNCC 4 cut(s) 635, 713, 724, 970
SchI GAGTC 3 cut(s) 290, 363, 455
ScrFI CCNGG 3 cut(s) 396, 642, 1238
SduI GDGCHC 2 cut(s) 627, 1138
SexAI ACCWGGT 1 cut(s) 394
SfaNI GCATC 4 cut(s) 253, 754, 811, 1177
SfuI TTCGAA 2 cut(s) 36, 109
SinI GGWCC 3 cut(s) 635, 724, 970
SmiMI CAYNNNNRTG 1 cut(s) 1196
SmlI CTYRAG 2 cut(s) 116, 1063
SmoI CTYRAG 2 cut(s) 116, 1063
Sse9I AATT 4 cut(s) 111, 558, 704, 719
SsiI CCGC 1 cut(s) 858
SspI AATATT 1 cut(s) 286
SspMI CTAG 4 cut(s) 78, 143, 465, 527
SstI GAGCTC 1 cut(s) 1138
StyD4I CCNGG 3 cut(s) 394, 640, 1236
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 848, 956
TaiI ACGT 5 cut(s) 29, 335, 589, 931, 1092
TaqI TCGA 8 cut(s) 36, 96, 109, 234, 486, 819, 843, 994
TasI AATT 4 cut(s) 111, 558, 704, 719
TfiI GAWTC 7 cut(s) 106, 152, 178, 250, 912, 1047, 1057
Tru1I TTAA 7 cut(s) 171, 192, 414, 471, 659, 702, 933
Tru9I TTAA 7 cut(s) 171, 192, 414, 471, 659, 702, 933
TscAI CASTG 2 cut(s) 853, 1155
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 4 cut(s) 205, 208, 677, 944
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 9 cut(s) 263, 504, 724, 796, 828, 939, 1088, 1221, 1233
TspGWI ACGGA 5 cut(s) 319, 749, 759, 783, 924
TspRI CASTG 2 cut(s) 853, 1155
Van91I CCANNNNNTGG 2 cut(s) 365, 647
VpaK11BI GGWCC 3 cut(s) 635, 724, 970
XapI RAATTY 1 cut(s) 111
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 1 cut(s) 1171
XcmI CCANNNNNNNNNTGG 1 cut(s) 734
XmiI GTMKAC 1 cut(s) 335
XspI CTAG 4 cut(s) 78, 143, 465, 527
ZraI GACGTC 1 cut(s) 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.