RLG00000011618

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001970
Physical Location & Seq
Reverse (-)
11051897 .. 11053744
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011618

Sequence Viewer

Length: 528 bp
ATGACCACCGACGACATTGTCAGGGCCACCAGTCTTCTGGACAACGAGATCCGAATTCTCAAGGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGAAGAATCAGGAAAAGATTAAGCTCGATAAGCAGTTGCCCTACTTGGTTGGCAACATTGTTGAGATATTAGAAATGAATCCTGAAGATGAAGCTGAGGAAGATGGGGCAAACATTGATCTTGACTCACAAAGAAAGGGCAAGTGTGTTGTTTTGAAAACATCTACTCGTCAGACAATCTTTCTGCCTGTTGTTGGGCTTGTTGACCCTGATAAATTAAAGCCTGGAGATCTTGTTGGTGTAAACAAAGATAGTTACCTGATCTTGGATACTCTGCCATCCGAGTATGATTCCCGAGTGAAGGCTATGGAGGACATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCGATGATCCGCCTGTTGCTCCTACAAGCAAGTTGATCATGTTCATGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

176

Amino Acids

19.6

Weight (kDa)

4.51

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 55 - 131 7e-11 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 17
AciI CCGC 1 cut(s) 485
AclWI GGATC 2 cut(s) 43, 476
AcsI RAATTY 1 cut(s) 54
AcuI CTGAAG 1 cut(s) 219
AfiI CCNNNNNNNGG 3 cut(s) 308, 379, 415
AgsI TTSAA 1 cut(s) 271
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 4 cut(s) 91, 139, 209, 464
AluI AGCT 4 cut(s) 91, 139, 209, 464
AlwI GGATC 2 cut(s) 43, 476
Ama87I CYCGRG 1 cut(s) 408
AoxI GGCC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 24
AsuNHI GCTAGC 1 cut(s) 464
AvaI CYCGRG 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 26
BbvCI CCTCAGC 1 cut(s) 210
BccI CCATC 2 cut(s) 212, 400
BcgI CGANNNNNNTGC 2 cut(s) 457, 491
BciT130I CCWGG 1 cut(s) 339
BciVI GTATCC 1 cut(s) 376
BclI TGATCA 1 cut(s) 510
BfaI CTAG 2 cut(s) 443, 465
BfuI GTATCC 1 cut(s) 376
BglII AGATCT 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 339
BmeT110I CYCGRG 1 cut(s) 408
BmgT120I GGNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 339
BmrI ACTGGG 1 cut(s) 444
BmtI GCTAGC 1 cut(s) 468
BmuI ACTGGG 1 cut(s) 444
BpiI GAAGAC 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 360
Bpu10I CCTNAGC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 379, 415
Bse1I ACTGG 2 cut(s) 30, 439
BseBI CCWGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 392
BseLI CCNNNNNNNGG 3 cut(s) 308, 379, 415
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 30, 439
BshFI GGCC 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 408
BslI CCNNNNNNNGG 3 cut(s) 308, 379, 415
BsnI GGCC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 408
Bsp143I GATC 6 cut(s) 48, 232, 343, 375, 481, 510
BspACI CCGC 1 cut(s) 485
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 202
BspOI GCTAGC 1 cut(s) 468
BspPI GGATC 2 cut(s) 43, 476
BsrI ACTGG 2 cut(s) 30, 439
BssMI GATC 6 cut(s) 48, 232, 343, 375, 481, 510
Bst2UI CCWGG 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 392
BstKTI GATC 6 cut(s) 51, 235, 346, 378, 484, 513
BstMBI GATC 6 cut(s) 48, 232, 343, 375, 481, 510
BstMWI GCNNNNNNNGC 2 cut(s) 145, 461
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 26
BstX2I RGATCY 2 cut(s) 48, 343
BstXI CCANNNNNNTGG 1 cut(s) 37
BstYI RGATCY 2 cut(s) 48, 343
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 392
Cac8I GCNNGC 1 cut(s) 466
Cfr13I GGNCC 1 cut(s) 24
CviAII CATG 2 cut(s) 514, 520
CviJI RGCY 8 cut(s) 26, 91, 139, 209, 313, 337, 419, 464
CviKI_1 RGCY 8 cut(s) 26, 91, 139, 209, 313, 337, 419, 464
DdeI CTNAG 1 cut(s) 210
DpnI GATC 6 cut(s) 50, 234, 345, 377, 483, 512
DpnII GATC 6 cut(s) 48, 232, 343, 375, 481, 510
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
EciI GGCGGA 1 cut(s) 474
Eco57I CTGAAG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 408
EcoRI GAATTC 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 337
FaeI CATG 2 cut(s) 517, 523
FaiI YATR 6 cut(s) 100, 402, 422, 431, 515, 521
FatI CATG 2 cut(s) 513, 519
FbaI TGATCA 1 cut(s) 510
FokI GGATG 1 cut(s) 379
FspBI CTAG 2 cut(s) 443, 465
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 1 cut(s) 26
Hin1II CATG 2 cut(s) 517, 523
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 5 cut(s) 95, 121, 193, 239, 404
Hpy166II GTNNAC 2 cut(s) 319, 358
Hpy188I TCNGA 3 cut(s) 53, 288, 397
Hpy188III TCNNGA 6 cut(s) 38, 125, 197, 236, 408, 443
Hpy8I GTNNAC 2 cut(s) 319, 358
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 409
HpyCH4V TGCA 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 461
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 2 cut(s) 517, 523
Ksp22I TGATCA 1 cut(s) 510
Kzo9I GATC 6 cut(s) 48, 232, 343, 375, 481, 510
LmnI GCTCC 2 cut(s) 88, 499
MaeI CTAG 2 cut(s) 443, 465
MaeIII GTNAC 1 cut(s) 368
MalI GATC 6 cut(s) 50, 234, 345, 377, 483, 512
MboI GATC 6 cut(s) 48, 232, 343, 375, 481, 510
MboII GAAGA 5 cut(s) 26, 77, 130, 212, 227
MflI RGATCY 2 cut(s) 48, 343
MluCI AATT 4 cut(s) 54, 68, 329, 469
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 3 cut(s) 205, 418, 439
MseI TTAA 2 cut(s) 135, 332
MslI CAYNNNNRTG 1 cut(s) 518
MspR9I CCNGG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 2 cut(s) 145, 461
NdeII GATC 6 cut(s) 48, 232, 343, 375, 481, 510
NheI GCTAGC 1 cut(s) 464
NlaIII CATG 2 cut(s) 517, 523
PfeI GAWTC 4 cut(s) 95, 121, 193, 404
PflFI GACNNNGTC 1 cut(s) 17
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspPI GGNCC 1 cut(s) 24
PsuI RGATCY 2 cut(s) 48, 343
PsyI GACNNNGTC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 518
SaqAI TTAA 2 cut(s) 135, 332
Sau3AI GATC 6 cut(s) 48, 232, 343, 375, 481, 510
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 339
SetI ASST 5 cut(s) 93, 141, 211, 375, 466
SmiMI CAYNNNNRTG 1 cut(s) 518
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 4 cut(s) 54, 68, 329, 469
SsiI CCGC 1 cut(s) 485
SspMI CTAG 2 cut(s) 443, 465
StyD4I CCNGG 1 cut(s) 337
TaqI TCGA 2 cut(s) 141, 477
TasI AATT 4 cut(s) 54, 68, 329, 469
TfiI GAWTC 4 cut(s) 95, 121, 193, 404
Tru1I TTAA 2 cut(s) 135, 332
Tru9I TTAA 2 cut(s) 135, 332
TspDTI ATGAA 4 cut(s) 87, 206, 219, 508
Tth111I GACNNNGTC 1 cut(s) 17
XapI RAATTY 1 cut(s) 54
XbaI TCTAGA 1 cut(s) 442
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XspI CTAG 2 cut(s) 443, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.