RchiOBHm_Chr7g0231371

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001970
Physical Location & Seq
Forward (+)
55011082 .. 55011737
656 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20735

Sequence Viewer

Length: 366 bp
ATGGAGGTTGATGAGAAACCAACTGAAGATTACAATGATATTGGAGGGCTAGAGAAACAGGCGTGGGCTGCTGACTTGCTCACTGTTTGTATCCCCCCAAACATTTGGATTCCGTACCCTAATACCTTTTTTTTTTTGTGGCTGCAACATATTCAAGAACTAGTTGAGGCAATTGTTTTACCCATGACCCACAAGGAGCGTTTTCAAAAATTAGGGGTTTGCCCACCAAAGGGAGTTCTTTTGTATGGACCTCCTGGAACTGGTAAAACTTTAATGGCCCGGGCTTGTGCTGCACAAACGAATGCCACTTTTCTGAAACTTGCAGGCCCACAACTGGTTCAGATTTCCTTTGCCTTATCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

121

Amino Acids

13.43

Weight (kDa)

5.58

Isoelectric Point (pI)

36.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 79 - 113 3.6e-10 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 4 cut(s) 229, 230, 260, 334
AgsI TTSAA 2 cut(s) 155, 206
AhlI ACTAGT 1 cut(s) 160
AjnI CCWGG 1 cut(s) 253
Ama87I CYCGRG 1 cut(s) 279
AoxI GGCC 2 cut(s) 276, 325
ApeKI GCWGC 3 cut(s) 68, 142, 290
AspS9I GGNCC 3 cut(s) 248, 277, 326
AsuC2I CCSGG 2 cut(s) 280, 281
AvaI CYCGRG 1 cut(s) 279
AvaII GGWCC 1 cut(s) 248
BbvI GCAGC 3 cut(s) 55, 129, 277
BciT130I CCWGG 1 cut(s) 255
BciVI GTATCC 1 cut(s) 101
BcnI CCSGG 2 cut(s) 280, 281
BcuI ACTAGT 1 cut(s) 160
BfaI CTAG 2 cut(s) 50, 161
BfuI GTATCC 1 cut(s) 101
BisI GCNGC 3 cut(s) 69, 143, 291
BlsI GCNGC 3 cut(s) 70, 144, 292
Bme1390I CCNGG 3 cut(s) 255, 280, 281
Bme18I GGWCC 1 cut(s) 248
BmeT110I CYCGRG 1 cut(s) 279
BmgT120I GGNCC 3 cut(s) 248, 277, 326
BmrFI CCNGG 3 cut(s) 255, 280, 281
BpuMI CCSGG 2 cut(s) 280, 281
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 230, 260, 334
Bse1I ACTGG 2 cut(s) 265, 339
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 279
BseLI CCNNNNNNNGG 4 cut(s) 229, 230, 260, 334
BseNI ACTGG 2 cut(s) 265, 339
BseXI GCAGC 3 cut(s) 55, 129, 277
BsgI GTGCAG 1 cut(s) 276
BshFI GGCC 2 cut(s) 278, 327
BsiHKCI CYCGRG 1 cut(s) 279
BsiSI CCGG 1 cut(s) 280
BslI CCNNNNNNNGG 4 cut(s) 229, 230, 260, 334
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 2 cut(s) 278, 327
BsoBI CYCGRG 1 cut(s) 279
BspANI GGCC 2 cut(s) 278, 327
BsrI ACTGG 2 cut(s) 265, 339
BssECI CCNNGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 325
BstMWI GCNNNNNNNGC 2 cut(s) 68, 290
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 3 cut(s) 253, 278, 279
BstV1I GCAGC 3 cut(s) 55, 129, 277
BstXI CCANNNNNNTGG 1 cut(s) 105
BsuI GTATCC 1 cut(s) 101
BsuRI GGCC 2 cut(s) 278, 327
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 325
Cfr13I GGNCC 3 cut(s) 248, 277, 326
Cfr9I CCCGGG 1 cut(s) 279
Csp6I GTAC 1 cut(s) 115
CviAII CATG 1 cut(s) 184
CviJI RGCY 6 cut(s) 49, 68, 142, 278, 284, 327
CviKI_1 RGCY 6 cut(s) 49, 68, 142, 278, 284, 327
CviQI GTAC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 253
FaeI CATG 1 cut(s) 187
FaiI YATR 3 cut(s) 150, 185, 246
FatI CATG 1 cut(s) 183
Fnu4HI GCNGC 3 cut(s) 69, 143, 291
Fsp4HI GCNGC 3 cut(s) 69, 143, 291
FspBI CTAG 2 cut(s) 50, 161
GluI GCNGC 3 cut(s) 69, 143, 291
HaeIII GGCC 2 cut(s) 278, 327
HapII CCGG 1 cut(s) 280
Hin1II CATG 1 cut(s) 187
HinfI GANTC 1 cut(s) 109
HpaII CCGG 1 cut(s) 280
Hpy188I TCNGA 2 cut(s) 315, 342
Hpy188III TCNNGA 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 3 cut(s) 145, 293, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 290
Hsp92II CATG 1 cut(s) 187
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 7 cut(s) 44, 240, 246, 267, 293, 309, 320
Lsp1109I GCAGC 3 cut(s) 55, 129, 277
MaeI CTAG 2 cut(s) 50, 161
MboII GAAGA 1 cut(s) 38
MfeI CAATTG 1 cut(s) 171
MluCI AATT 2 cut(s) 171, 209
MnlI CCTC 3 cut(s) 38, 160, 261
MseI TTAA 1 cut(s) 272
MspI CCGG 1 cut(s) 280
MspR9I CCNGG 3 cut(s) 255, 280, 281
MunI CAATTG 1 cut(s) 171
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 68, 290
NciI CCSGG 2 cut(s) 280, 281
NlaIII CATG 1 cut(s) 187
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 109
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 3 cut(s) 70, 144, 292
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspPI GGNCC 3 cut(s) 248, 277, 326
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 3 cut(s) 69, 143, 291
Sau96I GGNCC 3 cut(s) 248, 277, 326
ScrFI CCNGG 3 cut(s) 255, 280, 281
SetI ASST 3 cut(s) 9, 128, 253
SinI GGWCC 1 cut(s) 248
SmaI CCCGGG 1 cut(s) 281
SpeI ACTAGT 1 cut(s) 160
SrfI GCCCGGGC 1 cut(s) 281
Sse9I AATT 2 cut(s) 171, 209
SspMI CTAG 2 cut(s) 50, 161
StyD4I CCNGG 3 cut(s) 253, 278, 279
TaaI ACNGT 1 cut(s) 85
TasI AATT 2 cut(s) 171, 209
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TscAI CASTG 1 cut(s) 88
TseI GCWGC 3 cut(s) 68, 142, 290
TspGWI ACGGA 1 cut(s) 102
TspMI CCCGGG 1 cut(s) 279
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 248
XmaI CCCGGG 1 cut(s) 279
XspI CTAG 2 cut(s) 50, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.