Rw0G014490

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00649
OG0001970
Physical Location & Seq
Forward (+)
13571 .. 17123
3553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G014490.1

Sequence Viewer

Length: 900 bp
ATGGCGACCAATATGGTGGTCGAGGATACGAGCTTCGAGGATGATCAGCTGGCCGCGATGACCACCGACGATATTGTCAGGGCCACCCATCTTCTGGACAACGAGATCCGAATTCTCAAGGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAAGCTCAATAAGCAGTTGCCCTGCTTGGTCGGCAACATTGTTGAGATATGCTGTTTAGCTTTTAAAGTATCAACTACAATCTTTCTGCCTGCTGTTGGGCTTGTTGACCCTGATAAATTAAAGCCTGGAGGTCTTGTTGGTGTGAACAAAGATAGTTACCTGATCTTGGATACTCTGCCATCCGAGCGTGGGCTGCTGACTTGCTCACTGTTTGTATCCCCCCAAACATTTTGGATTCCGTACCCTAATACCTTTTTTTTTTTTGTGTGGCTGCAACAGATTGAAGAACTGGTTGAGGCAATTGTTTTACCCATGACCCACAAGGAGCGTTTTCAGAAATTAGGGGTTCGCCCACCAAAGGAAGTTCTTTTGTATGGACCTCCTGGAACTGGTAAAACTTTAATGGCCCGGGCTTGTGCTGCACAAACGAATGCCACTTTTCTGAAACTTGCAGGCCCACAACTGGTTCAGCAAGGAAGGTCATCACAGCAAAATGGAGCTGAAGTTGTAGAGCAGCAATTAGTTAGTGAAGAGTCTAAGCGTGATGGTGGTAGTCATCTTCAGCAGGGAAAACTGGTAGCTCACAGTGATGTGGATGATGAGTATCTTGCATCCCACTTAGCTGATAAAGAGAAAGAAATGAATGTTGTCCATGAAGCTGCAACTTGTCAGTTGAAGGGAGATGTCAACAAAAGAATCGAGCCAATG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

300

Amino Acids

33.51

Weight (kDa)

5.2

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 186 - 227 1.9e-10 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccB7I CCANNNNNTGG 1 cut(s) 94
AccII CGCG 1 cut(s) 56
AciI CCGC 1 cut(s) 54
AclWI GGATC 1 cut(s) 100
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 2 cut(s) 714, 737
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 7 cut(s) 94, 287, 358, 381, 550, 581, 655
AgsI TTSAA 2 cut(s) 476, 868
AjnI CCWGG 2 cut(s) 316, 574
AluBI AGCT 9 cut(s) 33, 49, 148, 196, 251, 692, 773, 815, 851
AluI AGCT 9 cut(s) 33, 49, 148, 196, 251, 692, 773, 815, 851
AlwI GGATC 1 cut(s) 100
Ama87I CYCGRG 1 cut(s) 600
AoxI GGCC 4 cut(s) 51, 81, 597, 646
ApeKI GCWGC 5 cut(s) 385, 463, 611, 706, 851
ApoI RAATTY 1 cut(s) 111
AspS9I GGNCC 4 cut(s) 81, 569, 598, 647
AsuC2I CCSGG 2 cut(s) 601, 602
AvaI CYCGRG 1 cut(s) 600
AvaII GGWCC 1 cut(s) 569
BbvI GCAGC 5 cut(s) 372, 450, 598, 718, 838
BccI CCATC 3 cut(s) 96, 379, 731
BciT130I CCWGG 2 cut(s) 318, 576
BciVI GTATCC 3 cut(s) 19, 355, 418
BclI TGATCA 1 cut(s) 43
BcnI CCSGG 2 cut(s) 601, 602
BfuI GTATCC 3 cut(s) 19, 355, 418
BisI GCNGC 6 cut(s) 54, 386, 464, 612, 707, 852
BlsI GCNGC 6 cut(s) 55, 387, 465, 613, 708, 853
Bme1390I CCNGG 4 cut(s) 318, 576, 601, 602
Bme18I GGWCC 1 cut(s) 569
BmeT110I CYCGRG 1 cut(s) 600
BmgT120I GGNCC 4 cut(s) 81, 569, 598, 647
BmrFI CCNGG 4 cut(s) 318, 576, 601, 602
BmsI GCATC 1 cut(s) 812
BpmI CTGGAG 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 601, 602
BsaBI GATNNNNATC 1 cut(s) 795
BsaJI CCNNGG 1 cut(s) 600
BsaXI ACNNNNNCTCC 4 cut(s) 312, 342, 681, 711
Bsc4I CCNNNNNNNGG 7 cut(s) 94, 287, 358, 381, 550, 581, 655
Bse1I ACTGG 4 cut(s) 486, 586, 660, 771
Bse8I GATNNNNATC 1 cut(s) 795
BseBI CCWGG 2 cut(s) 318, 576
BseDI CCNNGG 1 cut(s) 600
BseGI GGATG 4 cut(s) 46, 371, 793, 803
BseJI GATNNNNATC 1 cut(s) 795
BseLI CCNNNNNNNGG 7 cut(s) 94, 287, 358, 381, 550, 581, 655
BseNI ACTGG 4 cut(s) 486, 586, 660, 771
BseXI GCAGC 5 cut(s) 372, 450, 598, 718, 838
BsgI GTGCAG 1 cut(s) 597
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 4 cut(s) 53, 83, 599, 648
BsiHKCI CYCGRG 1 cut(s) 600
BsiSI CCGG 1 cut(s) 601
BslI CCNNNNNNNGG 7 cut(s) 94, 287, 358, 381, 550, 581, 655
BsmI GAATGC 1 cut(s) 628
BsnI GGCC 4 cut(s) 53, 83, 599, 648
BsoBI CYCGRG 1 cut(s) 600
Bsp143I GATC 3 cut(s) 43, 105, 354
BspACI CCGC 1 cut(s) 54
BspANI GGCC 4 cut(s) 53, 83, 599, 648
BspFNI CGCG 1 cut(s) 56
BspPI GGATC 1 cut(s) 100
BsrI ACTGG 4 cut(s) 486, 586, 660, 771
BssECI CCNNGG 1 cut(s) 600
BssMI GATC 3 cut(s) 43, 105, 354
Bst2UI CCWGG 2 cut(s) 318, 576
Bst4CI ACNGT 2 cut(s) 402, 779
Bst6I CTCTTC 1 cut(s) 717
BstC8I GCNNGC 3 cut(s) 51, 282, 646
BstDEI CTNAG 2 cut(s) 729, 811
BstF5I GGATG 4 cut(s) 46, 371, 793, 803
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 3 cut(s) 46, 108, 357
BstMBI GATC 3 cut(s) 43, 105, 354
BstMWI GCNNNNNNNGC 5 cut(s) 202, 222, 376, 385, 611
BstNI CCWGG 2 cut(s) 318, 576
BstSCI CCNGG 4 cut(s) 316, 574, 599, 600
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 5 cut(s) 372, 450, 598, 718, 838
BstX2I RGATCY 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 1 cut(s) 105
BsuI GTATCC 3 cut(s) 19, 355, 418
BsuRI GGCC 4 cut(s) 53, 83, 599, 648
BtgZI GCGATG 1 cut(s) 71
BtsCI GGATG 4 cut(s) 46, 371, 793, 803
BtsIMutI CAGTG 2 cut(s) 398, 784
Cac8I GCNNGC 3 cut(s) 51, 282, 646
Cfr13I GGNCC 4 cut(s) 81, 569, 598, 647
Cfr9I CCCGGG 1 cut(s) 600
Csp6I GTAC 1 cut(s) 433
CviAII CATG 2 cut(s) 505, 845
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 2 cut(s) 729, 811
DpnI GATC 3 cut(s) 45, 107, 356
DpnII GATC 3 cut(s) 43, 105, 354
DraI TTTAAA 1 cut(s) 256
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
Eco47I GGWCC 1 cut(s) 569
Eco57I CTGAAG 2 cut(s) 714, 737
Eco88I CYCGRG 1 cut(s) 600
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 316, 574
FaeI CATG 2 cut(s) 508, 848
FaiI YATR 6 cut(s) 14, 157, 241, 506, 567, 846
FatI CATG 2 cut(s) 504, 844
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 6 cut(s) 54, 386, 464, 612, 707, 852
FokI GGATG 4 cut(s) 53, 358, 790, 800
Fsp4HI GCNGC 6 cut(s) 54, 386, 464, 612, 707, 852
GluI GCNGC 6 cut(s) 54, 386, 464, 612, 707, 852
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 4 cut(s) 53, 83, 599, 648
HapII CCGG 1 cut(s) 601
Hin1II CATG 2 cut(s) 508, 848
HincII GTYRAC 2 cut(s) 298, 880
HindII GTYRAC 2 cut(s) 298, 880
HinfI GANTC 5 cut(s) 152, 178, 427, 725, 888
HpaII CCGG 1 cut(s) 601
Hpy166II GTNNAC 3 cut(s) 298, 337, 880
Hpy188I TCNGA 4 cut(s) 110, 376, 528, 636
Hpy188III TCNNGA 2 cut(s) 95, 182
Hpy8I GTNNAC 3 cut(s) 298, 337, 880
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 663, 862
HpyCH4III ACNGT 2 cut(s) 402, 779
HpyCH4V TGCA 6 cut(s) 130, 466, 614, 644, 803, 854
HpyF10VI GCNNNNNNNGC 5 cut(s) 202, 222, 376, 385, 611
HpyF3I CTNAG 2 cut(s) 729, 811
Hsp92II CATG 2 cut(s) 508, 848
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 3 cut(s) 43, 105, 354
LmnI GCTCC 3 cut(s) 145, 517, 689
Lsp1109I GCAGC 5 cut(s) 372, 450, 598, 718, 838
LweI GCATC 1 cut(s) 812
MaeIII GTNAC 1 cut(s) 347
MalI GATC 3 cut(s) 45, 107, 356
MboI GATC 3 cut(s) 43, 105, 354
MboII GAAGA 5 cut(s) 83, 134, 488, 734, 743
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 1 cut(s) 105
MluCI AATT 6 cut(s) 111, 125, 308, 492, 530, 710
MlyI GAGTC 1 cut(s) 734
MnlI CCTC 5 cut(s) 16, 31, 314, 481, 582
MseI TTAA 4 cut(s) 192, 255, 311, 593
MslI CAYNNNNRTG 1 cut(s) 780
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 1 cut(s) 601
MspR9I CCNGG 4 cut(s) 318, 576, 601, 602
MunI CAATTG 1 cut(s) 492
Mva1269I GAATGC 1 cut(s) 628
MvaI CCWGG 2 cut(s) 318, 576
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 5 cut(s) 202, 222, 376, 385, 611
NciI CCSGG 2 cut(s) 601, 602
NdeII GATC 3 cut(s) 43, 105, 354
NlaIII CATG 2 cut(s) 508, 848
PctI GAATGC 1 cut(s) 628
PfeI GAWTC 4 cut(s) 152, 178, 427, 888
PflMI CCANNNNNTGG 1 cut(s) 94
PfoI TCCNGGA 1 cut(s) 574
PkrI GCNGC 6 cut(s) 55, 387, 465, 613, 708, 853
PleI GAGTC 1 cut(s) 733
PpsI GAGTC 1 cut(s) 733
Psp6I CCWGG 2 cut(s) 316, 574
PspGI CCWGG 2 cut(s) 316, 574
PspPI GGNCC 4 cut(s) 81, 569, 598, 647
PsuI RGATCY 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 49
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 1 cut(s) 780
SaqAI TTAA 4 cut(s) 192, 255, 311, 593
SatI GCNGC 6 cut(s) 54, 386, 464, 612, 707, 852
Sau3AI GATC 3 cut(s) 43, 105, 354
Sau96I GGNCC 4 cut(s) 81, 569, 598, 647
SchI GAGTC 1 cut(s) 734
ScrFI CCNGG 4 cut(s) 318, 576, 601, 602
SfaNI GCATC 1 cut(s) 812
SinI GGWCC 1 cut(s) 569
SmaI CCCGGG 1 cut(s) 602
SmiMI CAYNNNNRTG 1 cut(s) 780
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SrfI GCCCGGGC 1 cut(s) 602
Sse9I AATT 6 cut(s) 111, 125, 308, 492, 530, 710
SsiI CCGC 1 cut(s) 54
StyD4I CCNGG 4 cut(s) 316, 574, 599, 600
TaaI ACNGT 2 cut(s) 402, 779
TaqI TCGA 3 cut(s) 21, 36, 891
TasI AATT 6 cut(s) 111, 125, 308, 492, 530, 710
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 4 cut(s) 152, 178, 427, 888
Tru1I TTAA 4 cut(s) 192, 255, 311, 593
Tru9I TTAA 4 cut(s) 192, 255, 311, 593
TscAI CASTG 2 cut(s) 405, 784
TseI GCWGC 5 cut(s) 385, 463, 611, 706, 851
TspDTI ATGAA 3 cut(s) 144, 848, 861
TspGWI ACGGA 1 cut(s) 420
TspMI CCCGGG 1 cut(s) 600
TspRI CASTG 2 cut(s) 405, 784
Van91I CCANNNNNTGG 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XmaI CCCGGG 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.