RLG00000002415

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001970
Physical Location & Seq
Reverse (-)
33737338 .. 33739239
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002415

Sequence Viewer

Length: 654 bp
ATGGCGACCAATATGGTGGTCGAGGACACAAGCTTCGAGGACGATCAGCTGGCCGCGATGACCACCGACGACATTGTCAGGGCCACCCGTCTTCTGGACAACGAGATCCGAATTCTCAAGGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATTAAGGAGAATCAGGAAAAGATTAAGCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATATTAGAAATGAATCCAGAAGATGAAGCTGAGGAAGATGGGGCAAACATTGTTCTTGACTCACATAGAAAGGGCAAGTGTACAATCTTTCTGCCTGTTGTTGGGCTTGTTGACCCTGATAAATTAAAGCATGGAGATCTTGTTGGTGTAAACAAAGATAGTTACCTGATCTTGGATACTCTGCCATTCGAGGATGATTCCCGAGTGAAGGCTACGGAGGTTGATGAGCACTGTGAAGATTTAATGCACATTTGTGATCTCGATTTTCATTTTCATATTGTCCAGTCTGGTATGGTGAACCAGTTGGTGTACAAGGATATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCGATGATCCGCCTGTTGCTCCTACAAGCAAGTTGATCATGTTCATGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

218

Amino Acids

24.54

Weight (kDa)

4.41

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 74 - 141 4.2e-06 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccII CGCG 1 cut(s) 56
AciI CCGC 2 cut(s) 54, 611
AclWI GGATC 2 cut(s) 100, 602
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 111
AfaI GTAC 2 cut(s) 319, 548
AfiI CCNNNNNNNGG 4 cut(s) 94, 338, 409, 445
AleI CACNNNNGTG 1 cut(s) 489
AluBI AGCT 6 cut(s) 33, 49, 148, 196, 266, 590
AluI AGCT 6 cut(s) 33, 49, 148, 196, 266, 590
Alw21I GWGCWC 1 cut(s) 468
AlwI GGATC 2 cut(s) 100, 602
Ama87I CYCGRG 1 cut(s) 438
AoxI GGCC 2 cut(s) 51, 81
ApoI RAATTY 1 cut(s) 111
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 544
AsuNHI GCTAGC 1 cut(s) 590
AvaI CYCGRG 1 cut(s) 438
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 468
BbvCI CCTCAGC 1 cut(s) 267
BccI CCATC 1 cut(s) 269
BcgI CGANNNNNNTGC 2 cut(s) 583, 617
BciVI GTATCC 1 cut(s) 406
BclI TGATCA 1 cut(s) 636
BfaI CTAG 2 cut(s) 569, 591
BfuI GTATCC 1 cut(s) 406
BglII AGATCT 1 cut(s) 373
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 438
BmgT120I GGNCC 1 cut(s) 81
BmrI ACTGGG 1 cut(s) 570
BmtI GCTAGC 1 cut(s) 594
BmuI ACTGGG 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 4 cut(s) 94, 338, 409, 445
Bse1I ACTGG 3 cut(s) 520, 538, 565
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 4 cut(s) 94, 338, 409, 445
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 3 cut(s) 520, 538, 565
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 2 cut(s) 53, 83
BsiHKAI GWGCWC 1 cut(s) 468
BsiHKCI CYCGRG 1 cut(s) 438
BslI CCNNNNNNNGG 4 cut(s) 94, 338, 409, 445
BsnI GGCC 2 cut(s) 53, 83
BsoBI CYCGRG 1 cut(s) 438
Bsp1286I GDGCHC 1 cut(s) 468
Bsp1407I TGTACA 2 cut(s) 317, 546
Bsp143I GATC 7 cut(s) 43, 105, 373, 405, 493, 607, 636
BspACI CCGC 2 cut(s) 54, 611
BspANI GGCC 2 cut(s) 53, 83
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 1 cut(s) 56
BspOI GCTAGC 1 cut(s) 594
BspPI GGATC 2 cut(s) 100, 602
BsrGI TGTACA 2 cut(s) 317, 546
BsrI ACTGG 3 cut(s) 520, 538, 565
BssMI GATC 7 cut(s) 43, 105, 373, 405, 493, 607, 636
Bst4CI ACNGT 1 cut(s) 470
BstAUI TGTACA 2 cut(s) 317, 546
BstC8I GCNNGC 2 cut(s) 51, 592
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 436
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 7 cut(s) 46, 108, 376, 408, 496, 610, 639
BstMBI GATC 7 cut(s) 43, 105, 373, 405, 493, 607, 636
BstMWI GCNNNNNNNGC 2 cut(s) 202, 587
BstUI CGCG 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 105, 373
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 2 cut(s) 105, 373
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 2 cut(s) 53, 83
BtgZI GCGATG 1 cut(s) 71
BtsCI GGATG 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 51, 592
Cfr13I GGNCC 1 cut(s) 81
Csp6I GTAC 2 cut(s) 318, 547
CviAII CATG 3 cut(s) 368, 640, 646
CviQI GTAC 2 cut(s) 318, 547
DdeI CTNAG 1 cut(s) 267
DpnI GATC 7 cut(s) 45, 107, 375, 407, 495, 609, 638
DpnII GATC 7 cut(s) 43, 105, 373, 405, 493, 607, 636
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 51
EciI GGCGGA 1 cut(s) 600
Eco88I CYCGRG 1 cut(s) 438
EcoRI GAATTC 1 cut(s) 111
FaeI CATG 3 cut(s) 371, 643, 649
FaiI YATR 9 cut(s) 14, 157, 303, 369, 513, 530, 557, 641, 647
FatI CATG 3 cut(s) 367, 639, 645
FbaI TGATCA 1 cut(s) 636
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 2 cut(s) 569, 591
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 2 cut(s) 53, 83
Hin1II CATG 3 cut(s) 371, 643, 649
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 5 cut(s) 152, 178, 250, 296, 434
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 5 cut(s) 318, 349, 388, 535, 547
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 7 cut(s) 95, 182, 254, 293, 438, 497, 569
Hpy8I GTNNAC 5 cut(s) 318, 349, 388, 535, 547
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4V TGCA 2 cut(s) 130, 484
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 587
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 3 cut(s) 371, 643, 649
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 7 cut(s) 43, 105, 373, 405, 493, 607, 636
LmnI GCTCC 2 cut(s) 145, 625
MaeI CTAG 2 cut(s) 569, 591
MaeIII GTNAC 1 cut(s) 398
MalI GATC 7 cut(s) 45, 107, 375, 407, 495, 609, 638
MboI GATC 7 cut(s) 43, 105, 373, 405, 493, 607, 636
MboII GAAGA 5 cut(s) 83, 134, 269, 284, 485
MflI RGATCY 2 cut(s) 105, 373
MhlI GDGCHC 1 cut(s) 468
MluCI AATT 4 cut(s) 111, 125, 359, 595
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 6 cut(s) 16, 31, 262, 421, 448, 565
MseI TTAA 4 cut(s) 171, 192, 362, 479
MslI CAYNNNNRTG 2 cut(s) 489, 644
MspA1I CMGCKG 1 cut(s) 49
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 202, 587
NdeII GATC 7 cut(s) 43, 105, 373, 405, 493, 607, 636
NheI GCTAGC 1 cut(s) 590
NlaIII CATG 3 cut(s) 371, 643, 649
OliI CACNNNNGTG 1 cut(s) 489
PfeI GAWTC 4 cut(s) 152, 178, 250, 434
PflFI GACNNNGTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PspPI GGNCC 1 cut(s) 81
PsuI RGATCY 2 cut(s) 105, 373
PsyI GACNNNGTC 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 49
RsaI GTAC 2 cut(s) 319, 548
RsaNI GTAC 2 cut(s) 318, 547
RseI CAYNNNNRTG 2 cut(s) 489, 644
SaqAI TTAA 4 cut(s) 171, 192, 362, 479
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 7 cut(s) 43, 105, 373, 405, 493, 607, 636
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 1 cut(s) 290
SduI GDGCHC 1 cut(s) 468
SetI ASST 8 cut(s) 35, 51, 150, 198, 268, 405, 459, 592
SmiMI CAYNNNNRTG 2 cut(s) 489, 644
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 4 cut(s) 111, 125, 359, 595
SsiI CCGC 2 cut(s) 54, 611
SspMI CTAG 2 cut(s) 569, 591
TaaI ACNGT 1 cut(s) 470
TaqI TCGA 5 cut(s) 21, 36, 426, 498, 603
TasI AATT 4 cut(s) 111, 125, 359, 595
TatI WGTACW 2 cut(s) 317, 546
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 4 cut(s) 152, 178, 250, 434
Tru1I TTAA 4 cut(s) 171, 192, 362, 479
Tru9I TTAA 4 cut(s) 171, 192, 362, 479
TscAI CASTG 1 cut(s) 473
TspDTI ATGAA 6 cut(s) 144, 263, 276, 494, 500, 634
TspGWI ACGGA 1 cut(s) 467
TspRI CASTG 1 cut(s) 473
Tth111I GACNNNGTC 1 cut(s) 74
XapI RAATTY 1 cut(s) 111
XbaI TCTAGA 1 cut(s) 568
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XspI CTAG 2 cut(s) 569, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.