RchiOBHm_Chr7g0231361

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001970
Physical Location & Seq
Forward (+)
55008549 .. 55011072
2524 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20734

Sequence Viewer

Length: 516 bp
ATGGTGACCAATATGGTGGTCGAGGATGCGAGCTTCGAGGATGATCAGCTGGCCGCGATGACCACCGACGACATTGTCAGGGCCACCCGTCTTCTGGACAACGAGATCCGAATTCTCAAGGCCCCTTCTCTCTCTCTAACTCTTTCTGAAGAATTGCAAAGAACAAACTTGGAGCCGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAAGCTCAATAAGCAGTTGCCCTACTTGGTCGACAACATTGTTGAGATGATGAGTTTGTTGTTATTCAAAAATTACCTGGTTCTGACTGATGAAGCTGAGGAAGATAGGGCAAACATGGATCTTGACTCACAAAGAAAGGGCAAGTGTGTTGTTTTGAAAACATCTACTCGTCAGACAATCTTTCTGCCTGTTGTTGGGCTTGTTGACCTTGATAAAATAAAGCCTGGAGATCTTGTTGGTGTGAACAAAGATAGTTACCTGATCTTGGATACTCTGCCATCCGAGTATGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

171

Amino Acids

19.46

Weight (kDa)

4.53

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 121 - 166 1e-08 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 249
AccII CGCG 1 cut(s) 56
AciI CCGC 1 cut(s) 54
AclWI GGATC 2 cut(s) 100, 345
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 168
AfiI CCNNNNNNNGG 3 cut(s) 94, 413, 484
AgsI TTSAA 2 cut(s) 286, 376
AjnI CCWGG 2 cut(s) 294, 442
AluBI AGCT 4 cut(s) 33, 49, 223, 314
AluI AGCT 4 cut(s) 33, 49, 223, 314
AlwI GGATC 2 cut(s) 100, 345
AoxI GGCC 3 cut(s) 51, 81, 120
ApoI RAATTY 1 cut(s) 111
AspS9I GGNCC 2 cut(s) 81, 121
AsuHPI GGTGA 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 315
BccI CCATC 1 cut(s) 505
BciT130I CCWGG 2 cut(s) 296, 444
BciVI GTATCC 1 cut(s) 481
BclI TGATCA 1 cut(s) 43
BfuI GTATCC 1 cut(s) 481
BglII AGATCT 1 cut(s) 448
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 2 cut(s) 296, 444
BmgT120I GGNCC 2 cut(s) 81, 121
BmiI GGNNCC 2 cut(s) 123, 174
BmrFI CCNGG 2 cut(s) 296, 444
BmsI GCATC 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 465
Bpu10I CCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 438, 468
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 413, 484
BseBI CCWGG 2 cut(s) 296, 444
BseGI GGATG 3 cut(s) 31, 46, 497
BseLI CCNNNNNNNGG 3 cut(s) 94, 413, 484
BseMII CTCAG 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 3 cut(s) 53, 83, 122
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 3 cut(s) 94, 413, 484
BsnI GGCC 3 cut(s) 53, 83, 122
Bsp143I GATC 5 cut(s) 43, 105, 337, 448, 480
BspACI CCGC 1 cut(s) 54
BspANI GGCC 3 cut(s) 53, 83, 122
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 123, 174
BspPI GGATC 2 cut(s) 100, 345
BssMI GATC 5 cut(s) 43, 105, 337, 448, 480
Bst2UI CCWGG 2 cut(s) 296, 444
BstC8I GCNNGC 2 cut(s) 31, 51
BstDEI CTNAG 1 cut(s) 315
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 3 cut(s) 31, 46, 497
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 5 cut(s) 46, 108, 340, 451, 483
BstMBI GATC 5 cut(s) 43, 105, 337, 448, 480
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNI CCWGG 2 cut(s) 296, 444
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 2 cut(s) 294, 442
BstUI CGCG 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 3 cut(s) 105, 337, 448
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 3 cut(s) 105, 337, 448
BsuI GTATCC 1 cut(s) 481
BsuRI GGCC 3 cut(s) 53, 83, 122
BtgZI GCGATG 1 cut(s) 71
BtsCI GGATG 3 cut(s) 31, 46, 497
Cac8I GCNNGC 2 cut(s) 31, 51
Cfr13I GGNCC 2 cut(s) 81, 121
CsiI ACCWGGT 1 cut(s) 294
CviAII CATG 1 cut(s) 334
DdeI CTNAG 1 cut(s) 315
DpnI GATC 5 cut(s) 45, 107, 339, 450, 482
DpnII GATC 5 cut(s) 43, 105, 337, 448, 480
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 4
EcoO109I RGGNCCY 1 cut(s) 121
EcoO65I GGTNACC 1 cut(s) 4
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 294, 442
FaeI CATG 1 cut(s) 337
FaiI YATR 4 cut(s) 14, 184, 335, 507
FatI CATG 1 cut(s) 333
FbaI TGATCA 1 cut(s) 43
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 3 cut(s) 38, 53, 484
Fsp4HI GCNGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 3 cut(s) 53, 83, 122
HapII CCGG 1 cut(s) 176
Hin1II CATG 1 cut(s) 337
HincII GTYRAC 2 cut(s) 250, 424
HindII GTYRAC 2 cut(s) 250, 424
HinfI GANTC 4 cut(s) 179, 205, 344, 509
HpaII CCGG 1 cut(s) 176
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 3 cut(s) 250, 424, 463
Hpy188I TCNGA 5 cut(s) 110, 148, 303, 393, 502
Hpy188III TCNNGA 4 cut(s) 95, 209, 341, 513
Hpy8I GTNNAC 3 cut(s) 250, 424, 463
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 1 cut(s) 315
Hsp92II CATG 1 cut(s) 337
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 5 cut(s) 43, 105, 337, 448, 480
LmnI GCTCC 1 cut(s) 172
LweI GCATC 1 cut(s) 16
MabI ACCWGGT 1 cut(s) 294
MaeIII GTNAC 2 cut(s) 4, 473
MalI GATC 5 cut(s) 45, 107, 339, 450, 482
MboI GATC 5 cut(s) 43, 105, 337, 448, 480
MboII GAAGA 3 cut(s) 83, 161, 332
MflI RGATCY 3 cut(s) 105, 337, 448
MluCI AATT 3 cut(s) 111, 152, 289
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 3 cut(s) 16, 31, 310
MseI TTAA 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 2 cut(s) 296, 444
MvaI CCWGG 2 cut(s) 296, 444
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 229
NdeII GATC 5 cut(s) 43, 105, 337, 448, 480
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 2 cut(s) 123, 174
NmuCI GTSAC 1 cut(s) 4
PfeI GAWTC 3 cut(s) 179, 205, 509
PflFI GACNNNGTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Psp6I CCWGG 2 cut(s) 294, 442
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 2 cut(s) 294, 442
PspN4I GGNNCC 2 cut(s) 123, 174
PspPI GGNCC 2 cut(s) 81, 121
PsuI RGATCY 3 cut(s) 105, 337, 448
PsyI GACNNNGTC 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 49
SalI GTCGAC 1 cut(s) 248
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 5 cut(s) 43, 105, 337, 448, 480
Sau96I GGNCC 2 cut(s) 81, 121
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 2 cut(s) 296, 444
SetI ASST 7 cut(s) 35, 51, 225, 297, 316, 429, 480
SexAI ACCWGGT 1 cut(s) 294
SfaNI GCATC 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 3 cut(s) 111, 152, 289
SsiI CCGC 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 294, 442
TaqI TCGA 3 cut(s) 21, 36, 249
TasI AATT 3 cut(s) 111, 152, 289
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 3 cut(s) 179, 205, 509
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 171, 324
Tth111I GACNNNGTC 1 cut(s) 74
XapI RAATTY 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.