Rh7CG440100

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001970
Physical Location & Seq
Forward (+)
57644270 .. 57647463
3194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG440100.1

Sequence Viewer

Length: 732 bp
ATGGCGACCAATATGGTGGTCGAGGATGCGAGCTTCGAGGATGATCAGCTGGCCGCGATGACCACCAACGACATTGTCAGGGCCACCCGTCTTCTGGACAACGAGATCCGAATTCTCAAGGCCCCTTCTCTCTCTCTAACTCTCTCTGAAGAATTGCAAAGAACAAACTTGGAGCCGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAAGCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATGATGAGTTTGTTGTTATTCAAAAATTACCTGGTTCTGACTGATGAAGCTGAGGAAGATGGGGCAAACATTGATCTTGACTCACAAAGAAAGGGCAAGTGTGTTGTTTTGAAAACATCTACTCGTCAGACAATCTTTCTGCCTGTTGTTGGGCTTGTTGACCCTGATAAAATAAAGCCTGGAGATCTTGCTATGGAGGTTGATGAGAAACCAACTGAAGATTACAATGATATTGGAGGGCTAGAGAAACAGATTCAAGAACTGGTTGAGGCAATTGTTTTACCCAGGACCCACAAGGAGCGTTTTCAGAAATTAGGGGTTCGCCCACCAAAGGGAGTTCTTTTGTATGGACCTCCTGGAACTGGTAAAACTTTAATGGCCCGGGCTTGTGCTGCACAAACGAATGCCACTTTTCTGAAACTTGCAGGCCCACAACTGGTTCAGATTTCCTTTGCCTTATCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

243

Amino Acids

27.01

Weight (kDa)

5.09

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 201 - 235 1.3e-09 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 56
AciI CCGC 1 cut(s) 54
AclWI GGATC 1 cut(s) 100
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 2 cut(s) 168, 501
AfiI CCNNNNNNNGG 6 cut(s) 94, 413, 595, 596, 626, 700
AgsI TTSAA 3 cut(s) 286, 376, 521
AjnI CCWGG 4 cut(s) 294, 442, 548, 619
AluBI AGCT 4 cut(s) 33, 49, 223, 314
AluI AGCT 4 cut(s) 33, 49, 223, 314
AlwI GGATC 1 cut(s) 100
Ama87I CYCGRG 1 cut(s) 645
AoxI GGCC 5 cut(s) 51, 81, 120, 642, 691
ApeKI GCWGC 1 cut(s) 656
ApoI RAATTY 1 cut(s) 111
AspS9I GGNCC 6 cut(s) 81, 121, 552, 614, 643, 692
AsuC2I CCSGG 2 cut(s) 646, 647
AvaI CYCGRG 1 cut(s) 645
AvaII GGWCC 2 cut(s) 552, 614
BbsI GAAGAC 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 643
BccI CCATC 1 cut(s) 317
BciT130I CCWGG 4 cut(s) 296, 444, 550, 621
BclI TGATCA 1 cut(s) 43
BcnI CCSGG 2 cut(s) 646, 647
BfaI CTAG 1 cut(s) 506
BglII AGATCT 1 cut(s) 448
BisI GCNGC 2 cut(s) 54, 657
BlsI GCNGC 2 cut(s) 55, 658
Bme1390I CCNGG 6 cut(s) 296, 444, 550, 621, 646, 647
Bme18I GGWCC 2 cut(s) 552, 614
BmeT110I CYCGRG 1 cut(s) 645
BmgT120I GGNCC 6 cut(s) 81, 121, 552, 614, 643, 692
BmiI GGNNCC 3 cut(s) 123, 174, 554
BmrFI CCNGG 6 cut(s) 296, 444, 550, 621, 646, 647
BmsI GCATC 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 465
Bpu10I CCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 646, 647
BsaJI CCNNGG 2 cut(s) 548, 645
Bsc4I CCNNNNNNNGG 6 cut(s) 94, 413, 595, 596, 626, 700
Bse1I ACTGG 3 cut(s) 531, 631, 705
BseBI CCWGG 4 cut(s) 296, 444, 550, 621
BseDI CCNNGG 2 cut(s) 548, 645
BseGI GGATG 2 cut(s) 31, 46
BseLI CCNNNNNNNGG 6 cut(s) 94, 413, 595, 596, 626, 700
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 3 cut(s) 531, 631, 705
BseXI GCAGC 1 cut(s) 643
BsgI GTGCAG 1 cut(s) 642
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 5 cut(s) 53, 83, 122, 644, 693
BsiHKCI CYCGRG 1 cut(s) 645
BsiSI CCGG 2 cut(s) 176, 646
BslI CCNNNNNNNGG 6 cut(s) 94, 413, 595, 596, 626, 700
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 5 cut(s) 53, 83, 122, 644, 693
BsoBI CYCGRG 1 cut(s) 645
Bsp143I GATC 4 cut(s) 43, 105, 337, 448
BspACI CCGC 1 cut(s) 54
BspANI GGCC 5 cut(s) 53, 83, 122, 644, 693
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 3 cut(s) 123, 174, 554
BspPI GGATC 1 cut(s) 100
BsrI ACTGG 3 cut(s) 531, 631, 705
BssECI CCNNGG 2 cut(s) 548, 645
BssMI GATC 4 cut(s) 43, 105, 337, 448
Bst2UI CCWGG 4 cut(s) 296, 444, 550, 621
BstC8I GCNNGC 3 cut(s) 31, 51, 691
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 2 cut(s) 31, 46
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 4 cut(s) 46, 108, 340, 451
BstMBI GATC 4 cut(s) 43, 105, 337, 448
BstMWI GCNNNNNNNGC 2 cut(s) 229, 656
BstNI CCWGG 4 cut(s) 296, 444, 550, 621
BstSCI CCNGG 6 cut(s) 294, 442, 548, 619, 644, 645
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 643
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 105, 448
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 2 cut(s) 105, 448
BsuRI GGCC 5 cut(s) 53, 83, 122, 644, 693
BtgZI GCGATG 1 cut(s) 71
BtsCI GGATG 2 cut(s) 31, 46
Cac8I GCNNGC 3 cut(s) 31, 51, 691
Cfr13I GGNCC 6 cut(s) 81, 121, 552, 614, 643, 692
Cfr9I CCCGGG 1 cut(s) 645
CsiI ACCWGGT 1 cut(s) 294
DdeI CTNAG 1 cut(s) 315
DpnI GATC 4 cut(s) 45, 107, 339, 450
DpnII GATC 4 cut(s) 43, 105, 337, 448
EaeI YGGCCR 1 cut(s) 51
Eco47I GGWCC 2 cut(s) 552, 614
Eco57I CTGAAG 2 cut(s) 168, 501
Eco88I CYCGRG 1 cut(s) 645
EcoO109I RGGNCCY 2 cut(s) 121, 552
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 4 cut(s) 294, 442, 548, 619
FaiI YATR 4 cut(s) 14, 184, 458, 612
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 54, 657
FokI GGATG 2 cut(s) 38, 53
Fsp4HI GCNGC 2 cut(s) 54, 657
FspBI CTAG 1 cut(s) 506
GluI GCNGC 2 cut(s) 54, 657
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 5 cut(s) 53, 83, 122, 644, 693
HapII CCGG 2 cut(s) 176, 646
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 4 cut(s) 179, 205, 344, 517
HpaII CCGG 2 cut(s) 176, 646
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 7 cut(s) 110, 148, 303, 393, 573, 681, 708
Hpy188III TCNNGA 4 cut(s) 95, 209, 341, 521
Hpy8I GTNNAC 1 cut(s) 424
HpyAV CCTTC 1 cut(s) 135
HpyCH4V TGCA 3 cut(s) 157, 659, 689
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 656
HpyF3I CTNAG 1 cut(s) 315
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 4 cut(s) 43, 105, 337, 448
LmnI GCTCC 2 cut(s) 172, 562
Lsp1109I GCAGC 1 cut(s) 643
LweI GCATC 1 cut(s) 16
MabI ACCWGGT 1 cut(s) 294
MaeI CTAG 1 cut(s) 506
MalI GATC 4 cut(s) 45, 107, 339, 450
MboI GATC 4 cut(s) 43, 105, 337, 448
MboII GAAGA 4 cut(s) 83, 161, 332, 494
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 2 cut(s) 105, 448
MluCI AATT 5 cut(s) 111, 152, 289, 537, 575
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 7 cut(s) 16, 31, 310, 454, 494, 526, 627
MseI TTAA 2 cut(s) 219, 638
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 2 cut(s) 176, 646
MspR9I CCNGG 6 cut(s) 296, 444, 550, 621, 646, 647
MunI CAATTG 1 cut(s) 537
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 4 cut(s) 296, 444, 550, 621
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 229, 656
NciI CCSGG 2 cut(s) 646, 647
NdeII GATC 4 cut(s) 43, 105, 337, 448
NlaIV GGNNCC 3 cut(s) 123, 174, 554
PctI GAATGC 1 cut(s) 673
PfeI GAWTC 3 cut(s) 179, 205, 517
PflFI GACNNNGTC 1 cut(s) 74
PfoI TCCNGGA 1 cut(s) 619
PkrI GCNGC 2 cut(s) 55, 658
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PpuMI RGGWCCY 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 552
Psp6I CCWGG 4 cut(s) 294, 442, 548, 619
PspGI CCWGG 4 cut(s) 294, 442, 548, 619
PspN4I GGNNCC 3 cut(s) 123, 174, 554
PspPI GGNCC 6 cut(s) 81, 121, 552, 614, 643, 692
PspPPI RGGWCCY 1 cut(s) 552
PsuI RGATCY 2 cut(s) 105, 448
PsyI GACNNNGTC 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 49
SaqAI TTAA 2 cut(s) 219, 638
SatI GCNGC 2 cut(s) 54, 657
Sau3AI GATC 4 cut(s) 43, 105, 337, 448
Sau96I GGNCC 6 cut(s) 81, 121, 552, 614, 643, 692
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 6 cut(s) 296, 444, 550, 621, 646, 647
SetI ASST 7 cut(s) 35, 51, 225, 297, 316, 465, 619
SexAI ACCWGGT 1 cut(s) 294
SfaNI GCATC 1 cut(s) 16
SinI GGWCC 2 cut(s) 552, 614
SmaI CCCGGG 1 cut(s) 647
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SrfI GCCCGGGC 1 cut(s) 647
Sse9I AATT 5 cut(s) 111, 152, 289, 537, 575
SsiI CCGC 1 cut(s) 54
SspMI CTAG 1 cut(s) 506
StyD4I CCNGG 6 cut(s) 294, 442, 548, 619, 644, 645
TaqI TCGA 2 cut(s) 21, 36
TasI AATT 5 cut(s) 111, 152, 289, 537, 575
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 3 cut(s) 179, 205, 517
Tru1I TTAA 2 cut(s) 219, 638
Tru9I TTAA 2 cut(s) 219, 638
TseI GCWGC 1 cut(s) 656
TspDTI ATGAA 2 cut(s) 171, 324
TspMI CCCGGG 1 cut(s) 645
Tth111I GACNNNGTC 1 cut(s) 74
VpaK11BI GGWCC 2 cut(s) 552, 614
XapI RAATTY 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XmaI CCCGGG 1 cut(s) 645
XspI CTAG 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.