Prupe.6G320300_v2.0.a1

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001970
Physical Location & Seq
Reverse (-)
28357481 .. 28362059
4579 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G320300.1

Sequence Viewer

Length: 1272 bp
ATGGCTACCGGTATGGTAGAAGATACGAGCTTCGAGGACGAGCAGCTGGCCGCCATGACCACCGAGGACATTATCAGAGCCACTCGCCTTCTTGATAACGAGATCCGAATACTCAAGGAAGAAATGCAAAGAACAAATTTGGAGTTGGATTCATACAAGGAGAAGATAAAGGAGAATCAGGAAAAGATTAAGCTTAATAAGCAGTTGCCTTACTTGGTAGGCAACATTGTTGAGATTCTGGAAATGAACCCAGAAGACGAGGCTGAGGAGGATGGTGCAAATATTGATCTTGACTCACAAAGAAAGGGGAAGTGTGTTGTTTTGAAAACATCTACTCGCCAGACTATCTTCCTGCCTGTTGTTGGGCTTGTTGATCCTGATAAGTTGAAGCCTGGTGATCTTGTTGGTGTGAACAAGGATAGTTACCTGATCTTGGATACTTTGCCATCAGAGTACGATTCTCGAGTAAAGGCTATGGAGGTCGACGAAAAACCGACTGAAGACTACAATGACATTGGAGGGCTGGAGAAGCAGATTCAAGAACTGGTTGAGGCGATTGTTTTACCCATGACCCACAAAGAGCGGTTTCAGAAATTAGGGATTCGTCCACCAAAGGGAGTGCTATTGTATGGACCTCCTGGAACTGGTAAAACATTAATGGCTCGGGCTTGTGCTGCACAAACCAATGCTACTTTTCTGAAACTGGCAGGCCCACAACTGGTTCAGATGTTCATTGGGGATGGAGCAAAACTTGTTCGTGATGCCTTTCAGCTTGCAAAAGAGAAATCCCCCTGCATCATTTTCATAGACGAAATTGATGCAATTGGCACAAAGCGATTTGATAGTGAAGTGAGTGGAGATAGGGAGGTGCAACGTACGATGCTTGAACTGCTTAATCAGCTTGATGGCTTTAGTAGCGATGACCGGATCAAGGTGATAGCAGCAACAAATCGTGCTGACATCCTCGATCCTGCTCTTATGCGTTCTGGTCGGTTGGATCGTAAAATTGAGTTTCCACATCCCACGGAAGATGCAAGAGCTAGAATTCTGCAGATTCACTCGAGGAAGATGAATGTCCACCCAGATGTGAATTTTGAAGAATTAGCTCGGTCTACTGATGATTTCAACGGTGCACAACTAAAAGCAGTGTGTGTGGAGGCAGGCATGCTGGCTTTGCGTCGGGATGCAACTGAGGTCAACCACGAAGATTTTAATGAAGGTATCATTCAAGTTCAGGCGAAAAAGAAGGCGAGCCTAAACTATTACGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

424

Amino Acids

47.5

Weight (kDa)

4.98

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 583
AccI GTMKAC 2 cut(s) 483, 1112
AciI CCGC 2 cut(s) 51, 583
AclWI GGATC 5 cut(s) 97, 368, 935, 962, 1005
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 3 cut(s) 136, 1044, 1090
AcuI CTGAAG 1 cut(s) 519
AfaI GTAC 2 cut(s) 455, 877
AfiI CCNNNNNNNGG 6 cut(s) 362, 433, 614, 644, 718, 931
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 7 cut(s) 325, 388, 539, 887, 1097, 1126, 1229
AjnI CCWGG 2 cut(s) 391, 637
AluBI AGCT 7 cut(s) 30, 46, 193, 772, 901, 1040, 1106
AluI AGCT 7 cut(s) 30, 46, 193, 772, 901, 1040, 1106
Alw21I GWGCWC 1 cut(s) 1135
Alw44I GTGCAC 1 cut(s) 1131
AlwI GGATC 5 cut(s) 97, 368, 935, 962, 1005
Ama87I CYCGRG 3 cut(s) 462, 663, 1060
AoxI GGCC 2 cut(s) 48, 709
ApaLI GTGCAC 1 cut(s) 1131
ApeKI GCWGC 3 cut(s) 43, 674, 941
ApoI RAATTY 3 cut(s) 136, 1044, 1090
AseI ATTAAT 1 cut(s) 656
AsiGI ACCGGT 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 632, 710
AsuHPI GGTGA 2 cut(s) 407, 946
AvaI CYCGRG 3 cut(s) 462, 663, 1060
AvaII GGWCC 1 cut(s) 632
BaeGI GKGCMC 1 cut(s) 1135
BbsI GAAGAC 2 cut(s) 261, 507
Bbv12I GWGCWC 1 cut(s) 1135
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 3 cut(s) 55, 661, 953
BccI CCATC 4 cut(s) 266, 454, 734, 899
BcgI CGANNNNNNTGC 2 cut(s) 800, 834
BciT130I CCWGG 2 cut(s) 393, 639
BciVI GTATCC 1 cut(s) 430
BfaI CTAG 1 cut(s) 1041
BfmI CTRYAG 1 cut(s) 1049
BfuI GTATCC 1 cut(s) 430
BisI GCNGC 4 cut(s) 44, 51, 675, 942
BlsI GCNGC 4 cut(s) 45, 52, 676, 943
Bme1390I CCNGG 2 cut(s) 393, 639
Bme18I GGWCC 1 cut(s) 632
BmeT110I CYCGRG 3 cut(s) 462, 663, 1060
BmgT120I GGNCC 2 cut(s) 632, 710
BmrFI CCNGG 2 cut(s) 393, 639
BmsI GCATC 6 cut(s) 751, 804, 808, 870, 1021, 1174
BpiI GAAGAC 2 cut(s) 261, 507
BpmI CTGGAG 1 cut(s) 545
Bpu10I CCTNAGC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 63, 1023
BsaWI WCCGGW 2 cut(s) 8, 924
Bsc4I CCNNNNNNNGG 6 cut(s) 362, 433, 614, 644, 718, 931
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 4 cut(s) 549, 649, 708, 723
BseBI CCWGG 2 cut(s) 393, 639
BseDI CCNNGG 2 cut(s) 63, 1023
BseGI GGATG 5 cut(s) 277, 745, 960, 1018, 1189
BseLI CCNNNNNNNGG 6 cut(s) 362, 433, 614, 644, 718, 931
BseMII CTCAG 2 cut(s) 255, 1182
BseNI ACTGG 4 cut(s) 549, 649, 708, 723
BseRI GAGGAG 1 cut(s) 281
BseSI GKGCMC 1 cut(s) 1135
BseXI GCAGC 3 cut(s) 55, 661, 953
BsgI GTGCAG 1 cut(s) 660
BshFI GGCC 2 cut(s) 50, 711
BshTI ACCGGT 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 1135
BsiHKCI CYCGRG 3 cut(s) 462, 663, 1060
BsiSI CCGG 2 cut(s) 9, 925
BsiWI CGTACG 1 cut(s) 875
BslI CCNNNNNNNGG 6 cut(s) 362, 433, 614, 644, 718, 931
BsnI GGCC 2 cut(s) 50, 711
BsoBI CYCGRG 3 cut(s) 462, 663, 1060
Bsp1286I GDGCHC 1 cut(s) 1135
Bsp143I GATC 8 cut(s) 102, 286, 373, 397, 429, 927, 967, 997
BspACI CCGC 2 cut(s) 51, 583
BspANI GGCC 2 cut(s) 50, 711
BspCNI CTCAG 2 cut(s) 256, 1183
BspMAI CTGCAG 1 cut(s) 1053
BspPI GGATC 5 cut(s) 97, 368, 935, 962, 1005
BsrBI CCGCTC 1 cut(s) 583
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 4 cut(s) 549, 649, 708, 723
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 2 cut(s) 63, 1023
BssMI GATC 8 cut(s) 102, 286, 373, 397, 429, 927, 967, 997
Bst2UI CCWGG 2 cut(s) 393, 639
Bst4CI ACNGT 1 cut(s) 1130
BstC8I GCNNGC 7 cut(s) 48, 709, 774, 1162, 1166, 1170, 1252
BstDEI CTNAG 2 cut(s) 264, 1191
BstDSI CCRYGG 1 cut(s) 1023
BstF5I GGATG 5 cut(s) 277, 745, 960, 1018, 1189
BstKTI GATC 8 cut(s) 105, 289, 376, 400, 432, 930, 970, 1000
BstMBI GATC 8 cut(s) 102, 286, 373, 397, 429, 927, 967, 997
BstMWI GCNNNNNNNGC 7 cut(s) 199, 529, 674, 889, 898, 915, 1174
BstNI CCWGG 2 cut(s) 393, 639
BstNSI RCATGY 1 cut(s) 1168
BstSCI CCNGG 2 cut(s) 391, 637
BstSFI CTRYAG 1 cut(s) 1049
BstSLI GKGCMC 1 cut(s) 1135
BstV1I GCAGC 3 cut(s) 55, 661, 953
BstV2I GAAGAC 2 cut(s) 261, 507
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 2 cut(s) 50, 711
BtgI CCRYGG 1 cut(s) 1023
BtgZI GCGATG 1 cut(s) 933
BtsCI GGATG 5 cut(s) 277, 745, 960, 1018, 1189
BtsI GCAGTG 1 cut(s) 1152
BtsIMutI CAGTG 1 cut(s) 1152
Cac8I GCNNGC 7 cut(s) 48, 709, 774, 1162, 1166, 1170, 1252
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 632, 710
CseI GACGC 1 cut(s) 1166
Csp6I GTAC 2 cut(s) 454, 876
CspAI ACCGGT 1 cut(s) 8
CviAII CATG 3 cut(s) 55, 568, 1165
CviQI GTAC 2 cut(s) 454, 876
DdeI CTNAG 2 cut(s) 264, 1191
DpnI GATC 8 cut(s) 104, 288, 375, 399, 431, 929, 969, 999
DpnII GATC 8 cut(s) 102, 286, 373, 397, 429, 927, 967, 997
EaeI YGGCCR 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 632
Eco57I CTGAAG 1 cut(s) 519
Eco88I CYCGRG 3 cut(s) 462, 663, 1060
EcoRI GAATTC 1 cut(s) 1044
EcoRII CCWGG 2 cut(s) 391, 637
FaeI CATG 3 cut(s) 58, 571, 1168
FatI CATG 3 cut(s) 54, 567, 1164
FblI GTMKAC 2 cut(s) 483, 1112
Fnu4HI GCNGC 4 cut(s) 44, 51, 675, 942
FokI GGATG 5 cut(s) 284, 752, 947, 1005, 1196
Fsp4HI GCNGC 4 cut(s) 44, 51, 675, 942
FspBI CTAG 1 cut(s) 1041
GluI GCNGC 4 cut(s) 44, 51, 675, 942
GsuI CTGGAG 1 cut(s) 545
HaeIII GGCC 2 cut(s) 50, 711
HapII CCGG 2 cut(s) 9, 925
HgaI GACGC 1 cut(s) 1166
Hin1II CATG 3 cut(s) 58, 571, 1168
HincII GTYRAC 2 cut(s) 484, 1198
HindII GTYRAC 2 cut(s) 484, 1198
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 8 cut(s) 149, 175, 235, 293, 458, 535, 601, 1054
HpaII CCGG 2 cut(s) 9, 925
HphI GGTGA 2 cut(s) 407, 946
Hpy166II GTNNAC 7 cut(s) 412, 484, 608, 1078, 1113, 1133, 1198
Hpy188I TCNGA 6 cut(s) 77, 107, 451, 591, 699, 726
Hpy188III TCNNGA 9 cut(s) 92, 179, 239, 290, 377, 462, 539, 758, 1181
Hpy8I GTNNAC 7 cut(s) 412, 484, 608, 1078, 1113, 1133, 1198
Hpy99I CGWCG 2 cut(s) 488, 1182
HpyAV CCTTC 3 cut(s) 98, 1211, 1240
HpyCH4III ACNGT 1 cut(s) 1130
HpyCH4IV ACGT 1 cut(s) 874
HpyF10VI GCNNNNNNNGC 7 cut(s) 199, 529, 674, 889, 898, 915, 1174
HpyF3I CTNAG 2 cut(s) 264, 1191
HpySE526I ACGT 1 cut(s) 874
Hsp92II CATG 3 cut(s) 58, 571, 1168
Kzo9I GATC 8 cut(s) 102, 286, 373, 397, 429, 927, 967, 997
LmnI GCTCC 1 cut(s) 743
Lsp1109I GCAGC 3 cut(s) 55, 661, 953
LweI GCATC 6 cut(s) 751, 804, 808, 870, 1021, 1174
MaeI CTAG 1 cut(s) 1041
MaeII ACGT 1 cut(s) 874
MaeIII GTNAC 1 cut(s) 422
MalI GATC 8 cut(s) 104, 288, 375, 399, 431, 929, 969, 999
MbiI CCGCTC 1 cut(s) 583
MboI GATC 8 cut(s) 102, 286, 373, 397, 429, 927, 967, 997
MfeI CAATTG 1 cut(s) 822
MflI RGATCY 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 1135
MluCI AATT 8 cut(s) 136, 593, 813, 822, 1005, 1044, 1090, 1100
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 2 cut(s) 126, 975
MseI TTAA 5 cut(s) 189, 195, 656, 894, 1212
MslI CAYNNNNRTG 1 cut(s) 1083
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 2 cut(s) 9, 925
MspR9I CCNGG 2 cut(s) 393, 639
MunI CAATTG 1 cut(s) 822
MvaI CCWGG 2 cut(s) 393, 639
MwoI GCNNNNNNNGC 7 cut(s) 199, 529, 674, 889, 898, 915, 1174
NdeII GATC 8 cut(s) 102, 286, 373, 397, 429, 927, 967, 997
NlaIII CATG 3 cut(s) 58, 571, 1168
NspI RCATGY 1 cut(s) 1168
PaeI GCATGC 1 cut(s) 1168
PaeR7I CTCGAG 2 cut(s) 462, 1060
PcsI WCGNNNNNNNCGW 1 cut(s) 997
PfeI GAWTC 7 cut(s) 149, 175, 235, 458, 535, 601, 1054
Pfl23II CGTACG 1 cut(s) 875
PfoI TCCNGGA 1 cut(s) 637
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 4 cut(s) 45, 52, 676, 943
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PshBI ATTAAT 1 cut(s) 656
Psp6I CCWGG 2 cut(s) 391, 637
PspGI CCWGG 2 cut(s) 391, 637
PspLI CGTACG 1 cut(s) 875
PspPI GGNCC 2 cut(s) 632, 710
PspXI VCTCGAGB 1 cut(s) 1060
PstI CTGCAG 1 cut(s) 1053
PsuI RGATCY 1 cut(s) 102
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 2 cut(s) 455, 877
RsaNI GTAC 2 cut(s) 454, 876
RseI CAYNNNNRTG 1 cut(s) 1083
SalI GTCGAC 1 cut(s) 482
SaqAI TTAA 5 cut(s) 189, 195, 656, 894, 1212
SatI GCNGC 4 cut(s) 44, 51, 675, 942
Sau3AI GATC 8 cut(s) 102, 286, 373, 397, 429, 927, 967, 997
Sau96I GGNCC 2 cut(s) 632, 710
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 2 cut(s) 393, 639
SduI GDGCHC 1 cut(s) 1135
SfaNI GCATC 6 cut(s) 751, 804, 808, 870, 1021, 1174
SfcI CTRYAG 1 cut(s) 1049
Sfr274I CTCGAG 2 cut(s) 462, 1060
SinI GGWCC 1 cut(s) 632
SlaI CTCGAG 2 cut(s) 462, 1060
SmiMI CAYNNNNRTG 1 cut(s) 1083
SmlI CTYRAG 3 cut(s) 113, 462, 1060
SmoI CTYRAG 3 cut(s) 113, 462, 1060
SphI GCATGC 1 cut(s) 1168
Sse9I AATT 8 cut(s) 136, 593, 813, 822, 1005, 1044, 1090, 1100
SsiI CCGC 2 cut(s) 51, 583
SspI AATATT 1 cut(s) 283
SspMI CTAG 1 cut(s) 1041
StyD4I CCNGG 2 cut(s) 391, 637
TaaI ACNGT 1 cut(s) 1130
TaiI ACGT 1 cut(s) 877
TaqI TCGA 5 cut(s) 33, 463, 483, 966, 1061
TaqII GACCGA 1 cut(s) 1098
TasI AATT 8 cut(s) 136, 593, 813, 822, 1005, 1044, 1090, 1100
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 7 cut(s) 149, 175, 235, 458, 535, 601, 1054
Tru1I TTAA 5 cut(s) 189, 195, 656, 894, 1212
Tru9I TTAA 5 cut(s) 189, 195, 656, 894, 1212
TscAI CASTG 1 cut(s) 1152
TseI GCWGC 3 cut(s) 43, 674, 941
TspDTI ATGAA 6 cut(s) 141, 260, 721, 793, 1085, 1230
TspGWI ACGGA 1 cut(s) 1040
TspRI CASTG 1 cut(s) 1152
VneI GTGCAC 1 cut(s) 1131
VpaK11BI GGWCC 1 cut(s) 632
VspI ATTAAT 1 cut(s) 656
XapI RAATTY 3 cut(s) 136, 1044, 1090
XceI RCATGY 1 cut(s) 1168
XhoI CTCGAG 2 cut(s) 462, 1060
XmiI GTMKAC 2 cut(s) 483, 1112
XspI CTAG 1 cut(s) 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.