Rh7AG420300

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001970
Physical Location & Seq
Forward (+)
56451003 .. 56454704
3702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG420300.1

Sequence Viewer

Length: 756 bp
ATGGCGACCAATATGGTGGTCGAGGATGCGAGCTTCGAGGATGATCAGCTGGCCGCGATGACCACCAACGACATTGTCAGGGCCACCCGTCTTCTGGACAACGAGATCCGAATTCTCAAGGCCCCTTCTCTCTCTCTAACTCTCTCTGAAGAATTGCAAAGAACAAACTTGGAGCCGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAAGCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATGATGAGTTTGTTGTTATTCAAAAATTACCTGGTTCTGACTGATGAAGCTGAGGAAGATGGGGCAAACATTGATCTTGACTCACAAAGAAAGGGCAAGTGTGTTGTTTTGAAAACATCTACTCGTCAGACAATCTTTCTGCCTGTTGTTGGGCTTGTTGACCCTGATAAAATAAAGCCTGGAGATCTTGCTATGGAGGTTGATGAGAAACCAACTGAAGATTACAATGATATTGGAGGGCTAGAGAAACAGATTCAAGAACTGGTTGAGGCAATTGTTTTACCCAGGACCCACAAGGAGCGTTTTCAGAAATTAGGGGCCCACAACTGGTTCAGATTTCCTTTGCCTTATCAACTTGATGGCTTACAATGCTGGAATTGCTTAATCAACTTGATGGCTTTAGTAGCAATGACCGGATCAAGATTCAATTTGTTAATGGACGTGTACCACAATCTATATCAGAAATACGAGGGTTGGTGTGCAAGGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

251

Amino Acids

28.78

Weight (kDa)

4.94

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 56
AciI CCGC 1 cut(s) 54
AclWI GGATC 2 cut(s) 100, 688
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 2 cut(s) 168, 501
AfaI GTAC 1 cut(s) 710
AfiI CCNNNNNNNGG 3 cut(s) 94, 413, 591
AflIII ACRYGT 1 cut(s) 705
AgsI TTSAA 4 cut(s) 286, 376, 521, 691
AjiI CACGTC 1 cut(s) 706
AjnI CCWGG 3 cut(s) 294, 442, 548
AluBI AGCT 4 cut(s) 33, 49, 223, 314
AluI AGCT 4 cut(s) 33, 49, 223, 314
AlwI GGATC 2 cut(s) 100, 688
AoxI GGCC 4 cut(s) 51, 81, 120, 582
ApaI GGGCCC 1 cut(s) 586
ApoI RAATTY 1 cut(s) 111
AspS9I GGNCC 5 cut(s) 81, 121, 552, 582, 583
AvaII GGWCC 1 cut(s) 552
BaeGI GKGCMC 1 cut(s) 586
BanII GRGCYC 1 cut(s) 586
BbsI GAAGAC 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 315
BccI CCATC 3 cut(s) 317, 617, 652
BciT130I CCWGG 3 cut(s) 296, 444, 550
BclI TGATCA 1 cut(s) 43
BfaI CTAG 1 cut(s) 506
BglII AGATCT 1 cut(s) 448
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 3 cut(s) 296, 444, 550
Bme18I GGWCC 1 cut(s) 552
BmgBI CACGTC 1 cut(s) 706
BmgT120I GGNCC 5 cut(s) 81, 121, 552, 582, 583
BmiI GGNNCC 5 cut(s) 123, 174, 554, 583, 584
BmrFI CCNGG 3 cut(s) 296, 444, 550
BmsI GCATC 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 465
Bpu10I CCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 548
BsaWI WCCGGW 1 cut(s) 677
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 413, 591
Bse1I ACTGG 2 cut(s) 531, 596
Bse3DI GCAATG 1 cut(s) 678
BseBI CCWGG 3 cut(s) 296, 444, 550
BseDI CCNNGG 1 cut(s) 548
BseGI GGATG 2 cut(s) 31, 46
BseLI CCNNNNNNNGG 3 cut(s) 94, 413, 591
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 2 cut(s) 531, 596
BseSI GKGCMC 1 cut(s) 586
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 4 cut(s) 53, 83, 122, 584
BsiSI CCGG 2 cut(s) 176, 678
BslI CCNNNNNNNGG 3 cut(s) 94, 413, 591
BsnI GGCC 4 cut(s) 53, 83, 122, 584
Bsp120I GGGCCC 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 5 cut(s) 43, 105, 337, 448, 680
BspACI CCGC 1 cut(s) 54
BspANI GGCC 4 cut(s) 53, 83, 122, 584
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 5 cut(s) 123, 174, 554, 583, 584
BspPI GGATC 2 cut(s) 100, 688
BsrDI GCAATG 1 cut(s) 678
BsrI ACTGG 2 cut(s) 531, 596
BssECI CCNNGG 1 cut(s) 548
BssMI GATC 5 cut(s) 43, 105, 337, 448, 680
Bst2UI CCWGG 3 cut(s) 296, 444, 550
BstC8I GCNNGC 2 cut(s) 31, 51
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 2 cut(s) 31, 46
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 5 cut(s) 46, 108, 340, 451, 683
BstMBI GATC 5 cut(s) 43, 105, 337, 448, 680
BstMWI GCNNNNNNNGC 4 cut(s) 229, 633, 642, 668
BstNI CCWGG 3 cut(s) 296, 444, 550
BstSCI CCNGG 3 cut(s) 294, 442, 548
BstSLI GKGCMC 1 cut(s) 586
BstUI CGCG 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 105, 448
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 2 cut(s) 105, 448
BsuRI GGCC 4 cut(s) 53, 83, 122, 584
BtgZI GCGATG 1 cut(s) 71
BtrI CACGTC 1 cut(s) 706
BtsCI GGATG 2 cut(s) 31, 46
Cac8I GCNNGC 2 cut(s) 31, 51
Cfr13I GGNCC 5 cut(s) 81, 121, 552, 582, 583
CsiI ACCWGGT 1 cut(s) 294
Csp6I GTAC 1 cut(s) 709
CviQI GTAC 1 cut(s) 709
DdeI CTNAG 1 cut(s) 315
DpnI GATC 5 cut(s) 45, 107, 339, 450, 682
DpnII GATC 5 cut(s) 43, 105, 337, 448, 680
EaeI YGGCCR 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 552
Eco57I CTGAAG 2 cut(s) 168, 501
EcoO109I RGGNCCY 3 cut(s) 121, 552, 582
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 3 cut(s) 294, 442, 548
EcoT38I GRGCYC 1 cut(s) 586
FaiI YATR 5 cut(s) 14, 184, 458, 721, 754
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 2 cut(s) 38, 53
FriOI GRGCYC 1 cut(s) 586
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 506
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 4 cut(s) 53, 83, 122, 584
HapII CCGG 2 cut(s) 176, 678
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 5 cut(s) 179, 205, 344, 517, 687
HpaII CCGG 2 cut(s) 176, 678
Hpy166II GTNNAC 2 cut(s) 424, 709
Hpy188I TCNGA 7 cut(s) 110, 148, 303, 393, 573, 599, 726
Hpy188III TCNNGA 5 cut(s) 95, 209, 341, 521, 684
Hpy8I GTNNAC 2 cut(s) 424, 709
HpyAV CCTTC 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 705
HpyCH4V TGCA 2 cut(s) 157, 746
HpyF10VI GCNNNNNNNGC 4 cut(s) 229, 633, 642, 668
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 1 cut(s) 705
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 5 cut(s) 43, 105, 337, 448, 680
LmnI GCTCC 2 cut(s) 172, 562
LweI GCATC 1 cut(s) 16
MabI ACCWGGT 1 cut(s) 294
MaeI CTAG 1 cut(s) 506
MaeII ACGT 1 cut(s) 705
MalI GATC 5 cut(s) 45, 107, 339, 450, 682
MboI GATC 5 cut(s) 43, 105, 337, 448, 680
MboII GAAGA 4 cut(s) 83, 161, 332, 494
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 2 cut(s) 105, 448
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 7 cut(s) 111, 152, 289, 537, 575, 640, 691
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 7 cut(s) 16, 31, 310, 454, 494, 526, 727
MseI TTAA 3 cut(s) 219, 647, 698
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 2 cut(s) 176, 678
MspR9I CCNGG 3 cut(s) 296, 444, 550
MunI CAATTG 1 cut(s) 537
MvaI CCWGG 3 cut(s) 296, 444, 550
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 4 cut(s) 229, 633, 642, 668
NdeII GATC 5 cut(s) 43, 105, 337, 448, 680
NlaIV GGNNCC 5 cut(s) 123, 174, 554, 583, 584
PfeI GAWTC 4 cut(s) 179, 205, 517, 687
PflFI GACNNNGTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PpuMI RGGWCCY 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 552
Psp6I CCWGG 3 cut(s) 294, 442, 548
PspGI CCWGG 3 cut(s) 294, 442, 548
PspN4I GGNNCC 5 cut(s) 123, 174, 554, 583, 584
PspOMI GGGCCC 1 cut(s) 582
PspPI GGNCC 5 cut(s) 81, 121, 552, 582, 583
PspPPI RGGWCCY 1 cut(s) 552
PsuI RGATCY 2 cut(s) 105, 448
PsyI GACNNNGTC 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 49
RsaI GTAC 1 cut(s) 710
RsaNI GTAC 1 cut(s) 709
SaqAI TTAA 3 cut(s) 219, 647, 698
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 5 cut(s) 43, 105, 337, 448, 680
Sau96I GGNCC 5 cut(s) 81, 121, 552, 582, 583
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 3 cut(s) 296, 444, 550
SduI GDGCHC 1 cut(s) 586
SetI ASST 7 cut(s) 35, 51, 225, 297, 316, 465, 708
SexAI ACCWGGT 1 cut(s) 294
SfaNI GCATC 1 cut(s) 16
SinI GGWCC 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 7 cut(s) 111, 152, 289, 537, 575, 640, 691
SsiI CCGC 1 cut(s) 54
SspMI CTAG 1 cut(s) 506
StyD4I CCNGG 3 cut(s) 294, 442, 548
TaiI ACGT 1 cut(s) 708
TaqI TCGA 2 cut(s) 21, 36
TasI AATT 7 cut(s) 111, 152, 289, 537, 575, 640, 691
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 4 cut(s) 179, 205, 517, 687
Tru1I TTAA 3 cut(s) 219, 647, 698
Tru9I TTAA 3 cut(s) 219, 647, 698
TspDTI ATGAA 2 cut(s) 171, 324
Tth111I GACNNNGTC 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 552
XapI RAATTY 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XspI CTAG 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.