RLG00000019137

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001970
Physical Location & Seq
Reverse (-)
47185173 .. 47187020
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019137

Sequence Viewer

Length: 594 bp
ATGACCACCGACGACATTGTCAGGGCCACCCGTCTTCTGGACAACGAGATCCGAATTCTCAAGGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAAGCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATATTAGAAATGAATCCAGAAGATGAAGCTGAGGAAGATGGGCAAACATTGATCTTGACTCACAAAGAAAGGGCAAGTACAATCTTTCTGCCTGTTGTTGGGCTTGTTGACCCTGATAAATTAAAGCCTGGAGATCTTGTTGGTGTAAACAAAGATAGTTACCTGATCTTGGATACTCTGCCATTCGAGTATGATTCCCGAGTGAAGGCTATGGAGGTTGATGAGCACTGTGAAGATTTAATGCACATTTGTGATCTCGTTTTTCATTTTCATATTGTCCAGTCTGGTATGGTGAACCAGTTGGTGTGCAAGGACATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCGATGATCCGCCTGTTGCTCCTACAAGCAAGTTGATCATGTTCATGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

198

Amino Acids

22.39

Weight (kDa)

4.54

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 55 - 121 5e-07 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 17
AciI CCGC 1 cut(s) 551
AclWI GGATC 2 cut(s) 43, 542
AcsI RAATTY 1 cut(s) 54
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 4 cut(s) 37, 278, 349, 385
AjnI CCWGG 1 cut(s) 307
AleI CACNNNNGTG 1 cut(s) 429
AluBI AGCT 4 cut(s) 91, 139, 209, 530
AluI AGCT 4 cut(s) 91, 139, 209, 530
Alw21I GWGCWC 1 cut(s) 408
AlwI GGATC 2 cut(s) 43, 542
Ama87I CYCGRG 1 cut(s) 378
AoxI GGCC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 484
AsuNHI GCTAGC 1 cut(s) 530
AvaI CYCGRG 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 408
BbvCI CCTCAGC 1 cut(s) 210
BccI CCATC 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 523, 557
BciT130I CCWGG 1 cut(s) 309
BciVI GTATCC 1 cut(s) 346
BclI TGATCA 1 cut(s) 576
BfaI CTAG 2 cut(s) 509, 531
BfuI GTATCC 1 cut(s) 346
BglII AGATCT 1 cut(s) 313
Bme1390I CCNGG 1 cut(s) 309
BmeT110I CYCGRG 1 cut(s) 378
BmgT120I GGNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 309
BmrI ACTGGG 1 cut(s) 510
BmtI GCTAGC 1 cut(s) 534
BmuI ACTGGG 1 cut(s) 510
BpiI GAAGAC 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 330
Bpu10I CCTNAGC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 278, 349, 385
Bse1I ACTGG 3 cut(s) 460, 478, 505
BseBI CCWGG 1 cut(s) 309
BseLI CCNNNNNNNGG 4 cut(s) 37, 278, 349, 385
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 3 cut(s) 460, 478, 505
BshFI GGCC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 378
BslI CCNNNNNNNGG 4 cut(s) 37, 278, 349, 385
BsnI GGCC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 408
Bsp143I GATC 7 cut(s) 48, 231, 313, 345, 433, 547, 576
BspACI CCGC 1 cut(s) 551
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 202
BspOI GCTAGC 1 cut(s) 534
BspPI GGATC 2 cut(s) 43, 542
BsrI ACTGG 3 cut(s) 460, 478, 505
BssMI GATC 7 cut(s) 48, 231, 313, 345, 433, 547, 576
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 532
BstDEI CTNAG 1 cut(s) 210
BstKTI GATC 7 cut(s) 51, 234, 316, 348, 436, 550, 579
BstMBI GATC 7 cut(s) 48, 231, 313, 345, 433, 547, 576
BstMWI GCNNNNNNNGC 2 cut(s) 145, 527
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstV2I GAAGAC 1 cut(s) 26
BstX2I RGATCY 2 cut(s) 48, 313
BstYI RGATCY 2 cut(s) 48, 313
BsuI GTATCC 1 cut(s) 346
BsuRI GGCC 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 406
Cac8I GCNNGC 1 cut(s) 532
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 258
CviAII CATG 2 cut(s) 580, 586
CviJI RGCY 8 cut(s) 26, 91, 139, 209, 283, 307, 389, 530
CviKI_1 RGCY 8 cut(s) 26, 91, 139, 209, 283, 307, 389, 530
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 1 cut(s) 210
DpnI GATC 7 cut(s) 50, 233, 315, 347, 435, 549, 578
DpnII GATC 7 cut(s) 48, 231, 313, 345, 433, 547, 576
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
EciI GGCGGA 1 cut(s) 540
Eco88I CYCGRG 1 cut(s) 378
EcoRI GAATTC 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 307
FaeI CATG 2 cut(s) 583, 589
FaiI YATR 8 cut(s) 100, 372, 392, 453, 470, 497, 581, 587
FatI CATG 2 cut(s) 579, 585
FbaI TGATCA 1 cut(s) 576
FspBI CTAG 2 cut(s) 509, 531
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 1 cut(s) 26
Hin1II CATG 2 cut(s) 583, 589
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 5 cut(s) 95, 121, 193, 238, 374
HphI GGTGA 1 cut(s) 484
Hpy166II GTNNAC 3 cut(s) 289, 328, 475
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 6 cut(s) 38, 125, 197, 235, 378, 509
Hpy8I GTNNAC 3 cut(s) 289, 328, 475
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 3 cut(s) 73, 424, 489
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 527
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 2 cut(s) 583, 589
Ksp22I TGATCA 1 cut(s) 576
Kzo9I GATC 7 cut(s) 48, 231, 313, 345, 433, 547, 576
LmnI GCTCC 2 cut(s) 88, 565
MaeI CTAG 2 cut(s) 509, 531
MaeIII GTNAC 1 cut(s) 338
MalI GATC 7 cut(s) 50, 233, 315, 347, 435, 549, 578
MboI GATC 7 cut(s) 48, 231, 313, 345, 433, 547, 576
MboII GAAGA 5 cut(s) 26, 77, 212, 227, 425
MflI RGATCY 2 cut(s) 48, 313
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 4 cut(s) 54, 68, 299, 535
MlyI GAGTC 1 cut(s) 232
MnlI CCTC 3 cut(s) 205, 388, 505
MseI TTAA 3 cut(s) 135, 302, 419
MslI CAYNNNNRTG 2 cut(s) 429, 584
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 2 cut(s) 145, 527
NdeII GATC 7 cut(s) 48, 231, 313, 345, 433, 547, 576
NheI GCTAGC 1 cut(s) 530
NlaIII CATG 2 cut(s) 583, 589
OliI CACNNNNGTG 1 cut(s) 429
PfeI GAWTC 4 cut(s) 95, 121, 193, 374
PflFI GACNNNGTC 1 cut(s) 17
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspPI GGNCC 1 cut(s) 24
PsuI RGATCY 2 cut(s) 48, 313
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
RseI CAYNNNNRTG 2 cut(s) 429, 584
SaqAI TTAA 3 cut(s) 135, 302, 419
Sau3AI GATC 7 cut(s) 48, 231, 313, 345, 433, 547, 576
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 408
SetI ASST 6 cut(s) 93, 141, 211, 345, 399, 532
SmiMI CAYNNNNRTG 2 cut(s) 429, 584
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 4 cut(s) 54, 68, 299, 535
SsiI CCGC 1 cut(s) 551
SspMI CTAG 2 cut(s) 509, 531
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 1 cut(s) 410
TaqI TCGA 2 cut(s) 366, 543
TasI AATT 4 cut(s) 54, 68, 299, 535
TatI WGTACW 1 cut(s) 257
TfiI GAWTC 4 cut(s) 95, 121, 193, 374
Tru1I TTAA 3 cut(s) 135, 302, 419
Tru9I TTAA 3 cut(s) 135, 302, 419
TscAI CASTG 1 cut(s) 413
TspDTI ATGAA 6 cut(s) 87, 206, 219, 434, 440, 574
TspRI CASTG 1 cut(s) 413
Tth111I GACNNNGTC 1 cut(s) 17
XapI RAATTY 1 cut(s) 54
XbaI TCTAGA 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XspI CTAG 2 cut(s) 509, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.