Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001970

Physical Location & Seq

Genomic Coordinates Forward (+)

12433300 .. 12447054

Gene Structure 13755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG069800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAATATTAAGCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATGATGAGTTTGTTGTTATTCAAAAATTACCTGGTTCTGACTGATGAAGCTGAGGAAGATGGGGCAAACATTTATCTTGACTCACAAAGAAAGGGCAAGTGTGTTGTTTTGATAACATCTACTCGTCAGACAATCTTTCTGCCTGTTGTTGCGCTTGTTGACCCTGATAAATTAAAGCCTGGAGGTCTTGTTGGTGTGAACAAAGATAGTTACCTGATCTTGGATACTCTGCCATCCGAATTTCCTTTGCCTTATCAACTTGATGGCTTACAATGCTTGAATTGCGTAATCAACTTGATGGCTTTAGTAGCAATGACCGGATCAAGGTTGGTGTGCAAGGACATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCGATGATCCGCCTGTTGCTCCTACAAGCAAGTTGATCATGTTCATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

182

Amino Acids

20.09

Weight (kDa)

4.6

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prot_ATP_ID_OB_C	PF16450	69 - 114	5.2e-07	Proteasomal ATPase OB C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05530
fragaria_vesca	FvH4_6g06600 FvH4_6g06600
prunus_persica	Prupe.6G320300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0110751 RchiOBHm_Chr3g0455801 RchiOBHm_Chr7g0231361 RchiOBHm_Chr7g0231371
rosa_laevigata	RLG00000002415 RLG00000011618 RLG00000019137 RLG00000025331
rosa_multiflora	Rmu_sc0001294.1_g000017 Rmu_sc0020335.1_g000004 Rmu_sc0023945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423470 Rroxscaffold_6G00423960
rosa_rugosa	Rorug03G0011200 Rorug03G0164200 Rorug03G0164300 Rorug03G0164300 Rorug03G0164300 Rorug05G0270100 Rorug07G0211600
rosa_samantha	Rh1AG219200 Rh1CG203300 Rh2CG295700 Rh2DG332600 Rh3AG069700 Rh3BG072300 Rh3CG070500 Rh3DG072900 Rh4AG071900 Rh4AG072700 Rh4AG075000 Rh4BG069800 Rh4CG078000 Rh7AG420300 Rh7CG440100
rosa_wichuraiana	Rw0G014490 Rw1G022930 Rw3G005640 Rw3G005990 Rw3G013020 Rw7G037120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	506
AclWI	GGATC	2 cut(s)	436, 497
AcsI	RAATTY	1 cut(s)	347
AfiI	CCNNNNNNNGG	2 cut(s)	328, 432
AgsI	TTSAA	2 cut(s)	130, 388
AjnI	CCWGG	2 cut(s)	138, 286
AluBI	AGCT	4 cut(s)	19, 67, 158, 485
AluI	AGCT	4 cut(s)	19, 67, 158, 485
AlwI	GGATC	2 cut(s)	436, 497
ApoI	RAATTY	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	262
AsuNHI	GCTAGC	1 cut(s)	485
BbvCI	CCTCAGC	1 cut(s)	159
BccI	CCATC	4 cut(s)	161, 349, 365, 400
BcgI	CGANNNNNNTGC	2 cut(s)	478, 512
BciT130I	CCWGG	2 cut(s)	140, 288
BciVI	GTATCC	1 cut(s)	325
BclI	TGATCA	1 cut(s)	531
BfaI	CTAG	2 cut(s)	464, 486
BfuI	GTATCC	1 cut(s)	325
Bme1390I	CCNGG	2 cut(s)	140, 288
BmrFI	CCNGG	2 cut(s)	140, 288
BmrI	ACTGGG	1 cut(s)	465
BmtI	GCTAGC	1 cut(s)	489
BmuI	ACTGGG	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	425
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 432
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	140, 288
BseGI	GGATG	1 cut(s)	341
BseLI	CCNNNNNNNGG	2 cut(s)	328, 432
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	460
BsiSI	CCGG	1 cut(s)	426
BslI	CCNNNNNNNGG	2 cut(s)	328, 432
Bsp143I	GATC	4 cut(s)	324, 428, 502, 531
BspACI	CCGC	1 cut(s)	506
BspCNI	CTCAG	1 cut(s)	151
BspOI	GCTAGC	1 cut(s)	489
BspPI	GGATC	2 cut(s)	436, 497
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	460
BssMI	GATC	4 cut(s)	324, 428, 502, 531
Bst2UI	CCWGG	2 cut(s)	140, 288
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	4 cut(s)	327, 431, 505, 534
BstMBI	GATC	4 cut(s)	324, 428, 502, 531
BstMWI	GCNNNNNNNGC	5 cut(s)	73, 381, 390, 416, 482
BstNI	CCWGG	2 cut(s)	140, 288
BstSCI	CCNGG	2 cut(s)	138, 286
BsuI	GTATCC	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	487
CfoI	GCGC	1 cut(s)	262
CsiI	ACCWGGT	1 cut(s)	138
CviAII	CATG	2 cut(s)	535, 541
CviJI	RGCY	7 cut(s)	19, 67, 158, 286, 375, 410, 485
CviKI_1	RGCY	7 cut(s)	19, 67, 158, 286, 375, 410, 485
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	4 cut(s)	326, 430, 504, 533
DpnII	GATC	4 cut(s)	324, 428, 502, 531
EciI	GGCGGA	1 cut(s)	495
EcoRII	CCWGG	2 cut(s)	138, 286
FaeI	CATG	2 cut(s)	538, 544
FaiI	YATR	4 cut(s)	28, 452, 536, 542
FatI	CATG	2 cut(s)	534, 540
FbaI	TGATCA	1 cut(s)	531
FokI	GGATG	1 cut(s)	328
FspBI	CTAG	2 cut(s)	464, 486
GlaI	GCGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	309
HapII	CCGG	1 cut(s)	426
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	2 cut(s)	538, 544
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	3 cut(s)	23, 49, 188
HpaII	CCGG	1 cut(s)	426
Hpy166II	GTNNAC	2 cut(s)	268, 307
Hpy188I	TCNGA	3 cut(s)	147, 237, 346
Hpy188III	TCNNGA	3 cut(s)	53, 185, 464
Hpy8I	GTNNAC	2 cut(s)	268, 307
HpyCH4V	TGCA	1 cut(s)	444
HpyF10VI	GCNNNNNNNGC	5 cut(s)	73, 381, 390, 416, 482
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	538, 544
HspAI	GCGC	1 cut(s)	260
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	4 cut(s)	324, 428, 502, 531
LmnI	GCTCC	2 cut(s)	16, 520
MabI	ACCWGGT	1 cut(s)	138
MaeI	CTAG	2 cut(s)	464, 486
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	4 cut(s)	326, 430, 504, 533
MboI	GATC	4 cut(s)	324, 428, 502, 531
MboII	GAAGA	1 cut(s)	176
MluCI	AATT	5 cut(s)	133, 278, 347, 388, 490
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	3 cut(s)	154, 284, 460
MseI	TTAA	2 cut(s)	63, 281
MslI	CAYNNNNRTG	1 cut(s)	539
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	2 cut(s)	140, 288
MvaI	CCWGG	2 cut(s)	140, 288
MwoI	GCNNNNNNNGC	5 cut(s)	73, 381, 390, 416, 482
NdeII	GATC	4 cut(s)	324, 428, 502, 531
NheI	GCTAGC	1 cut(s)	485
NlaIII	CATG	2 cut(s)	538, 544
PfeI	GAWTC	2 cut(s)	23, 49
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	138, 286
PspGI	CCWGG	2 cut(s)	138, 286
RseI	CAYNNNNRTG	1 cut(s)	539
SaqAI	TTAA	2 cut(s)	63, 281
Sau3AI	GATC	4 cut(s)	324, 428, 502, 531
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	140, 288
SetI	ASST	8 cut(s)	21, 69, 141, 160, 295, 324, 437, 487
SexAI	ACCWGGT	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	539
Sse9I	AATT	5 cut(s)	133, 278, 347, 388, 490
SsiI	CCGC	1 cut(s)	506
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	2 cut(s)	464, 486
StyD4I	CCNGG	2 cut(s)	138, 286
TaqI	TCGA	1 cut(s)	498
TasI	AATT	5 cut(s)	133, 278, 347, 388, 490
TfiI	GAWTC	2 cut(s)	23, 49
Tru1I	TTAA	2 cut(s)	63, 281
Tru9I	TTAA	2 cut(s)	63, 281
TspDTI	ATGAA	3 cut(s)	15, 168, 529
XapI	RAATTY	1 cut(s)	347
XbaI	TCTAGA	1 cut(s)	463
XspI	CTAG	2 cut(s)	464, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.