Rh4CG078000

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001970
Physical Location & Seq
Forward (+)
14099376 .. 14101564
2189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG078000.1

Sequence Viewer

Length: 549 bp
ATGGAGGTTGATGAGAAACCAACTGAAGATTACAATGATATTGGACGGCTAGAGAAACAGATTCAAGAACTGGTTGAGGCAATTGTTTTACCCATGACCCACAAGGAGCGTTTTCAGAAATTAGGGGTTCGCCCACCAAAGGGAGTTCTTTTGTATGGACCTCCTGGAACTGGTAAAACTTTAATGGCCCGGGCTTGTGCTGCACAAACGAATGCCACTTTTCTGAAACTTGCAGGCCTACAACTGGTTCAGGATCATCTGTTTCTTAAAGTTATAATGTCCTTGCATTGTGAAAAATTGAATTATTTGTTCGAGATGTTTCTTAGATTTAAATGTTTGTTCTACAGATTTCCTTTGCCTTATCAACTTGATGGCTTACAATGCTTGAATTGCGTAATCAACTTGATGGCTTTAGTAGCAATGACCGGATCAAGGTTGGTGTGCAAGGACATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCGATGATCCGCCTGTTGCTCCTACAAGCAAGTTGATCATGTTCATGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

182

Amino Acids

20.45

Weight (kDa)

6.31

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 49 - 85 6.7e-10 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 275
AciI CCGC 1 cut(s) 506
AclWI GGATC 3 cut(s) 261, 436, 497
AcuI CTGAAG 1 cut(s) 45
AfiI CCNNNNNNNGG 5 cut(s) 139, 140, 170, 244, 432
AgsI TTSAA 3 cut(s) 65, 301, 388
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 1 cut(s) 485
AluI AGCT 1 cut(s) 485
AlwI GGATC 3 cut(s) 261, 436, 497
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 2 cut(s) 186, 235
ApeKI GCWGC 1 cut(s) 200
AspS9I GGNCC 2 cut(s) 158, 187
AsuC2I CCSGG 2 cut(s) 190, 191
AsuNHI GCTAGC 1 cut(s) 485
AvaI CYCGRG 1 cut(s) 189
AvaII GGWCC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 365, 400
BceAI ACGGC 1 cut(s) 62
BcgI CGANNNNNNTGC 2 cut(s) 478, 512
BciT130I CCWGG 1 cut(s) 165
BclI TGATCA 1 cut(s) 531
BcnI CCSGG 2 cut(s) 190, 191
BfaI CTAG 3 cut(s) 50, 464, 486
BfmI CTRYAG 1 cut(s) 343
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 3 cut(s) 165, 190, 191
Bme18I GGWCC 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 158, 187
BmrFI CCNGG 3 cut(s) 165, 190, 191
BmrI ACTGGG 1 cut(s) 465
BmtI GCTAGC 1 cut(s) 489
BmuI ACTGGG 1 cut(s) 465
BpuMI CCSGG 2 cut(s) 190, 191
BsaJI CCNNGG 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 425
Bsc4I CCNNNNNNNGG 5 cut(s) 139, 140, 170, 244, 432
Bse1I ACTGG 4 cut(s) 75, 175, 249, 460
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 189
BseLI CCNNNNNNNGG 5 cut(s) 139, 140, 170, 244, 432
BseMI GCAATG 1 cut(s) 426
BseNI ACTGG 4 cut(s) 75, 175, 249, 460
BseXI GCAGC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 2 cut(s) 188, 237
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 2 cut(s) 190, 426
BslI CCNNNNNNNGG 5 cut(s) 139, 140, 170, 244, 432
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 2 cut(s) 188, 237
BsoBI CYCGRG 1 cut(s) 189
Bsp143I GATC 4 cut(s) 253, 428, 502, 531
BspACI CCGC 1 cut(s) 506
BspANI GGCC 2 cut(s) 188, 237
BspOI GCTAGC 1 cut(s) 489
BspPI GGATC 3 cut(s) 261, 436, 497
BsrDI GCAATG 1 cut(s) 426
BsrI ACTGG 4 cut(s) 75, 175, 249, 460
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 4 cut(s) 253, 428, 502, 531
Bst2UI CCWGG 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 235, 487
BstDEI CTNAG 1 cut(s) 323
BstKTI GATC 4 cut(s) 256, 431, 505, 534
BstMBI GATC 4 cut(s) 253, 428, 502, 531
BstMWI GCNNNNNNNGC 5 cut(s) 200, 381, 390, 416, 482
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 3 cut(s) 163, 188, 189
BstSFI CTRYAG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 188, 237
Cac8I GCNNGC 2 cut(s) 235, 487
Cfr13I GGNCC 2 cut(s) 158, 187
Cfr9I CCCGGG 1 cut(s) 189
CviAII CATG 3 cut(s) 94, 535, 541
CviJI RGCY 7 cut(s) 49, 188, 194, 237, 375, 410, 485
CviKI_1 RGCY 7 cut(s) 49, 188, 194, 237, 375, 410, 485
DdeI CTNAG 1 cut(s) 323
DpnI GATC 4 cut(s) 255, 430, 504, 533
DpnII GATC 4 cut(s) 253, 428, 502, 531
DraI TTTAAA 1 cut(s) 331
EciI GGCGGA 1 cut(s) 495
Eco147I AGGCCT 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 163
FaeI CATG 3 cut(s) 97, 538, 544
FaiI YATR 6 cut(s) 95, 156, 275, 452, 536, 542
FatI CATG 3 cut(s) 93, 534, 540
FbaI TGATCA 1 cut(s) 531
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 3 cut(s) 50, 464, 486
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 188, 237
HapII CCGG 2 cut(s) 190, 426
Hin1II CATG 3 cut(s) 97, 538, 544
HinfI GANTC 1 cut(s) 61
HpaII CCGG 2 cut(s) 190, 426
Hpy188I TCNGA 2 cut(s) 117, 225
Hpy188III TCNNGA 4 cut(s) 65, 251, 313, 464
HpyCH4V TGCA 4 cut(s) 203, 233, 286, 444
HpyF10VI GCNNNNNNNGC 5 cut(s) 200, 381, 390, 416, 482
HpyF3I CTNAG 1 cut(s) 323
Hsp92II CATG 3 cut(s) 97, 538, 544
Ksp22I TGATCA 1 cut(s) 531
Kzo9I GATC 4 cut(s) 253, 428, 502, 531
LmnI GCTCC 2 cut(s) 106, 520
Lsp1109I GCAGC 1 cut(s) 187
MaeI CTAG 3 cut(s) 50, 464, 486
MalI GATC 4 cut(s) 255, 430, 504, 533
MboI GATC 4 cut(s) 253, 428, 502, 531
MboII GAAGA 1 cut(s) 38
MfeI CAATTG 1 cut(s) 81
MluCI AATT 6 cut(s) 81, 119, 296, 301, 388, 490
MnlI CCTC 3 cut(s) 70, 171, 460
MseI TTAA 3 cut(s) 182, 267, 330
MslI CAYNNNNRTG 1 cut(s) 539
MspI CCGG 2 cut(s) 190, 426
MspR9I CCNGG 3 cut(s) 165, 190, 191
MunI CAATTG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 5 cut(s) 200, 381, 390, 416, 482
NciI CCSGG 2 cut(s) 190, 191
NdeII GATC 4 cut(s) 253, 428, 502, 531
NheI GCTAGC 1 cut(s) 485
NlaIII CATG 3 cut(s) 97, 538, 544
PceI AGGCCT 1 cut(s) 237
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 61
PfoI TCCNGGA 1 cut(s) 163
PkrI GCNGC 1 cut(s) 202
PsiI TTATAA 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspPI GGNCC 2 cut(s) 158, 187
RseI CAYNNNNRTG 1 cut(s) 539
SaqAI TTAA 3 cut(s) 182, 267, 330
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 4 cut(s) 253, 428, 502, 531
Sau96I GGNCC 2 cut(s) 158, 187
ScrFI CCNGG 3 cut(s) 165, 190, 191
SetI ASST 4 cut(s) 9, 163, 437, 487
SfcI CTRYAG 1 cut(s) 343
SinI GGWCC 1 cut(s) 158
SmaI CCCGGG 1 cut(s) 191
SmiI ATTTAAAT 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 539
SrfI GCCCGGGC 1 cut(s) 191
Sse9I AATT 6 cut(s) 81, 119, 296, 301, 388, 490
SseBI AGGCCT 1 cut(s) 237
SsiI CCGC 1 cut(s) 506
SspMI CTAG 3 cut(s) 50, 464, 486
StuI AGGCCT 1 cut(s) 237
StyD4I CCNGG 3 cut(s) 163, 188, 189
SwaI ATTTAAAT 1 cut(s) 331
TaqI TCGA 2 cut(s) 312, 498
TasI AATT 6 cut(s) 81, 119, 296, 301, 388, 490
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 3 cut(s) 182, 267, 330
Tru9I TTAA 3 cut(s) 182, 267, 330
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 529
TspMI CCCGGG 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 158
XbaI TCTAGA 1 cut(s) 463
XmaI CCCGGG 1 cut(s) 189
XspI CTAG 3 cut(s) 50, 464, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.