Rh1AG219200

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001970
Physical Location & Seq
Forward (+)
41673519 .. 41677342
3824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG219200.1

Sequence Viewer

Length: 705 bp
ATGGCGACCAATATGGTGGTCGAGGATACGAGCTTCGAGGATGATCAGCTGGCCGCGATGACCACCGACGACATTGTCAGGGCCACCCGTCTTCTGGACAACGAGATCCGAATTCTCAAGGCCCCTTCTCTCTCTCTAACTCTCTCTGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAAGCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATGATGAGTTTGTTGTTATTCAAAAATTACCTGGTTCTGACTGATGAAGCTGAGGAAGATGGGGCAAACATTTATCTTGACTCACAAAGAAAGGGCAAGTGTGTTGTTTTGAAAACATCTACTCGTCAGACAATCTTTATGCCTGTTGTTGGGCTTGTTGACCCTGATAAATTAAAGCCTGGAGGTCTTGTTGGTGTGAACAAAGATAGTTACCTAATCTTGGATACTCTGCCATCCAAATTTCCTTTGCCTTATCAACTTGATGGCTTACAATGCTTGAATTGCTTAATCAACTTGATGGCTTTAGTAGCAATGACCGGATCAAGGTTGGTGTGCAAGGACATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCAATGATCCGCCTGTTGCTCCTACAAGCAAGTTGATCATGTTCATGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

234

Amino Acids

26.0

Weight (kDa)

4.71

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 121 - 166 1.6e-07 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccII CGCG 1 cut(s) 56
AciI CCGC 2 cut(s) 54, 662
AclWI GGATC 3 cut(s) 100, 592, 653
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 2 cut(s) 111, 503
AcuI CTGAAG 1 cut(s) 168
AfiI CCNNNNNNNGG 4 cut(s) 94, 413, 484, 588
AgsI TTSAA 3 cut(s) 286, 376, 544
AjnI CCWGG 2 cut(s) 294, 442
AluBI AGCT 6 cut(s) 33, 49, 175, 223, 314, 641
AluI AGCT 6 cut(s) 33, 49, 175, 223, 314, 641
AlwI GGATC 3 cut(s) 100, 592, 653
AoxI GGCC 3 cut(s) 51, 81, 120
ApoI RAATTY 2 cut(s) 111, 503
AspS9I GGNCC 2 cut(s) 81, 121
AsuNHI GCTAGC 1 cut(s) 641
BbsI GAAGAC 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 315
BccI CCATC 4 cut(s) 317, 505, 521, 556
BciT130I CCWGG 2 cut(s) 296, 444
BciVI GTATCC 2 cut(s) 19, 481
BclI TGATCA 2 cut(s) 43, 687
BfaI CTAG 2 cut(s) 620, 642
BfuI GTATCC 2 cut(s) 19, 481
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 2 cut(s) 296, 444
BmgT120I GGNCC 2 cut(s) 81, 121
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 296, 444
BmrI ACTGGG 1 cut(s) 621
BmtI GCTAGC 1 cut(s) 645
BmuI ACTGGG 1 cut(s) 621
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 465
Bpu10I CCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 581
BsaXI ACNNNNNCTCC 2 cut(s) 438, 468
Bsc4I CCNNNNNNNGG 4 cut(s) 94, 413, 484, 588
Bse1I ACTGG 1 cut(s) 616
Bse3DI GCAATG 1 cut(s) 582
BseBI CCWGG 2 cut(s) 296, 444
BseGI GGATG 2 cut(s) 46, 497
BseLI CCNNNNNNNGG 4 cut(s) 94, 413, 484, 588
BseMI GCAATG 1 cut(s) 582
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 616
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 3 cut(s) 53, 83, 122
BsiSI CCGG 1 cut(s) 582
BslI CCNNNNNNNGG 4 cut(s) 94, 413, 484, 588
BsnI GGCC 3 cut(s) 53, 83, 122
Bsp143I GATC 5 cut(s) 43, 105, 584, 658, 687
BspACI CCGC 2 cut(s) 54, 662
BspANI GGCC 3 cut(s) 53, 83, 122
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 123
BspOI GCTAGC 1 cut(s) 645
BspPI GGATC 3 cut(s) 100, 592, 653
BsrDI GCAATG 1 cut(s) 582
BsrI ACTGG 1 cut(s) 616
BssMI GATC 5 cut(s) 43, 105, 584, 658, 687
Bst2UI CCWGG 2 cut(s) 296, 444
BstC8I GCNNGC 2 cut(s) 51, 643
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 2 cut(s) 46, 497
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 5 cut(s) 46, 108, 587, 661, 690
BstMBI GATC 5 cut(s) 43, 105, 584, 658, 687
BstMWI GCNNNNNNNGC 5 cut(s) 229, 537, 546, 572, 638
BstNI CCWGG 2 cut(s) 296, 444
BstSCI CCNGG 2 cut(s) 294, 442
BstUI CGCG 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 1 cut(s) 105
BsuI GTATCC 2 cut(s) 19, 481
BsuRI GGCC 3 cut(s) 53, 83, 122
BtgZI GCGATG 1 cut(s) 71
BtsCI GGATG 2 cut(s) 46, 497
Cac8I GCNNGC 2 cut(s) 51, 643
Cfr13I GGNCC 2 cut(s) 81, 121
CsiI ACCWGGT 1 cut(s) 294
CviAII CATG 2 cut(s) 691, 697
DdeI CTNAG 1 cut(s) 315
DpnI GATC 5 cut(s) 45, 107, 586, 660, 689
DpnII GATC 5 cut(s) 43, 105, 584, 658, 687
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 51
EciI GGCGGA 1 cut(s) 651
Eco57I CTGAAG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 294, 442
FaeI CATG 2 cut(s) 694, 700
FaiI YATR 6 cut(s) 14, 184, 404, 608, 692, 698
FatI CATG 2 cut(s) 690, 696
FbaI TGATCA 2 cut(s) 43, 687
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 2 cut(s) 53, 484
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 2 cut(s) 620, 642
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 3 cut(s) 53, 83, 122
HapII CCGG 1 cut(s) 582
Hin1II CATG 2 cut(s) 694, 700
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 3 cut(s) 179, 205, 344
HpaII CCGG 1 cut(s) 582
Hpy166II GTNNAC 2 cut(s) 424, 463
Hpy188I TCNGA 4 cut(s) 110, 148, 303, 393
Hpy188III TCNNGA 4 cut(s) 95, 209, 341, 620
Hpy8I GTNNAC 2 cut(s) 424, 463
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 157, 600
HpyF10VI GCNNNNNNNGC 5 cut(s) 229, 537, 546, 572, 638
HpyF3I CTNAG 1 cut(s) 315
Hsp92II CATG 2 cut(s) 694, 700
Ksp22I TGATCA 2 cut(s) 43, 687
Kzo9I GATC 5 cut(s) 43, 105, 584, 658, 687
LmnI GCTCC 2 cut(s) 172, 676
MabI ACCWGGT 1 cut(s) 294
MaeI CTAG 2 cut(s) 620, 642
MaeIII GTNAC 1 cut(s) 473
MalI GATC 5 cut(s) 45, 107, 586, 660, 689
MboI GATC 5 cut(s) 43, 105, 584, 658, 687
MboII GAAGA 3 cut(s) 83, 161, 332
MflI RGATCY 1 cut(s) 105
MluCI AATT 7 cut(s) 111, 152, 289, 434, 503, 544, 646
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 5 cut(s) 16, 31, 310, 440, 616
MseI TTAA 3 cut(s) 219, 437, 551
MslI CAYNNNNRTG 1 cut(s) 695
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 1 cut(s) 582
MspR9I CCNGG 2 cut(s) 296, 444
MvaI CCWGG 2 cut(s) 296, 444
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 5 cut(s) 229, 537, 546, 572, 638
NdeII GATC 5 cut(s) 43, 105, 584, 658, 687
NheI GCTAGC 1 cut(s) 641
NlaIII CATG 2 cut(s) 694, 700
NlaIV GGNNCC 1 cut(s) 123
PfeI GAWTC 2 cut(s) 179, 205
PflFI GACNNNGTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Psp6I CCWGG 2 cut(s) 294, 442
PspGI CCWGG 2 cut(s) 294, 442
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 2 cut(s) 81, 121
PsuI RGATCY 1 cut(s) 105
PsyI GACNNNGTC 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 695
SaqAI TTAA 3 cut(s) 219, 437, 551
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 5 cut(s) 43, 105, 584, 658, 687
Sau96I GGNCC 2 cut(s) 81, 121
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 2 cut(s) 296, 444
SexAI ACCWGGT 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 7 cut(s) 111, 152, 289, 434, 503, 544, 646
SsiI CCGC 2 cut(s) 54, 662
SspMI CTAG 2 cut(s) 620, 642
StyD4I CCNGG 2 cut(s) 294, 442
TaqI TCGA 2 cut(s) 21, 36
TasI AATT 7 cut(s) 111, 152, 289, 434, 503, 544, 646
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 179, 205
Tru1I TTAA 3 cut(s) 219, 437, 551
Tru9I TTAA 3 cut(s) 219, 437, 551
TspDTI ATGAA 3 cut(s) 171, 324, 685
Tth111I GACNNNGTC 1 cut(s) 74
XapI RAATTY 2 cut(s) 111, 503
XbaI TCTAGA 1 cut(s) 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XspI CTAG 2 cut(s) 620, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.