Rw7G037120

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001970
Physical Location & Seq
Forward (+)
56405122 .. 56407644
2523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037120.1

Sequence Viewer

Length: 483 bp
ATGGCGACCAATATGGTGGTCAAGGATACGAGCTTCGAGGATGATCAGCTGGCAGCGATGACCACCGACGACATTGTTAGGGCCACCCGTCTTCTGGACAACGAGATCCGAATTCTCAAGGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAAGCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATGATGAGTTTGTTGTTATTCAAAAATTACCTGGTTCTGACTGATGAAGCTGAGGAAGATGGGGCAAACATTTATCTTGACTCACAAAGAAAGGTCAAGTGTGTTGTTTTGAAAACATCTACTCGTCAGACAATCTTTCTGCCTGCTGTTGGGCTTGTTGACCCTGATAAATTAAAGCCTGGAGGTCTTGTTGGTGTGAACAAAGATAGTTACCTGATCTTGGATACTCTGCAGTATGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

160

Amino Acids

18.23

Weight (kDa)

4.8

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 112 - 156 1.3e-06 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 100
AcsI RAATTY 1 cut(s) 111
AfiI CCNNNNNNNGG 3 cut(s) 94, 386, 457
AgsI TTSAA 2 cut(s) 259, 349
AjnI CCWGG 2 cut(s) 267, 415
AluBI AGCT 5 cut(s) 33, 49, 148, 196, 287
AluI AGCT 5 cut(s) 33, 49, 148, 196, 287
AlwI GGATC 1 cut(s) 100
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 65
BccI CCATC 1 cut(s) 290
BciT130I CCWGG 2 cut(s) 269, 417
BciVI GTATCC 2 cut(s) 19, 454
BclI TGATCA 1 cut(s) 43
BfmI CTRYAG 1 cut(s) 467
BfuI GTATCC 2 cut(s) 19, 454
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 2 cut(s) 269, 417
BmgT120I GGNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 269, 417
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 438
Bpu10I CCTNAGC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 386, 457
BseBI CCWGG 2 cut(s) 269, 417
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 3 cut(s) 94, 386, 457
BseMII CTCAG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 65
BshFI GGCC 1 cut(s) 83
BslI CCNNNNNNNGG 3 cut(s) 94, 386, 457
BsnI GGCC 1 cut(s) 83
Bsp143I GATC 3 cut(s) 43, 105, 453
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 280
BspMAI CTGCAG 1 cut(s) 471
BspPI GGATC 1 cut(s) 100
BssMI GATC 3 cut(s) 43, 105, 453
Bst2UI CCWGG 2 cut(s) 269, 417
BstC8I GCNNGC 2 cut(s) 51, 381
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 3 cut(s) 46, 108, 456
BstMBI GATC 3 cut(s) 43, 105, 453
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstNI CCWGG 2 cut(s) 269, 417
BstSCI CCNGG 2 cut(s) 267, 415
BstSFI CTRYAG 1 cut(s) 467
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 1 cut(s) 105
BsuI GTATCC 2 cut(s) 19, 454
BsuRI GGCC 1 cut(s) 83
BtgZI GCGATG 1 cut(s) 71
BtsCI GGATG 1 cut(s) 46
Cac8I GCNNGC 2 cut(s) 51, 381
Cfr13I GGNCC 1 cut(s) 81
CsiI ACCWGGT 1 cut(s) 267
CviJI RGCY 8 cut(s) 33, 49, 83, 148, 196, 287, 391, 415
CviKI_1 RGCY 8 cut(s) 33, 49, 83, 148, 196, 287, 391, 415
DdeI CTNAG 1 cut(s) 288
DpnI GATC 3 cut(s) 45, 107, 455
DpnII GATC 3 cut(s) 43, 105, 453
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 267, 415
FaiI YATR 3 cut(s) 14, 157, 474
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 438
HaeIII GGCC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 4 cut(s) 152, 178, 317, 476
Hpy166II GTNNAC 2 cut(s) 397, 436
Hpy188I TCNGA 3 cut(s) 110, 276, 366
Hpy188III TCNNGA 4 cut(s) 95, 182, 314, 480
Hpy8I GTNNAC 2 cut(s) 397, 436
Hpy99I CGWCG 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 130, 469
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 288
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 3 cut(s) 43, 105, 453
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 1 cut(s) 65
MabI ACCWGGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 446
MalI GATC 3 cut(s) 45, 107, 455
MboI GATC 3 cut(s) 43, 105, 453
MboII GAAGA 3 cut(s) 83, 134, 305
MflI RGATCY 1 cut(s) 105
MluCI AATT 4 cut(s) 111, 125, 262, 407
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 3 cut(s) 31, 283, 413
MseI TTAA 2 cut(s) 192, 410
MspA1I CMGCKG 1 cut(s) 49
MspR9I CCNGG 2 cut(s) 269, 417
MvaI CCWGG 2 cut(s) 269, 417
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 3 cut(s) 43, 105, 453
PfeI GAWTC 3 cut(s) 152, 178, 476
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
Psp6I CCWGG 2 cut(s) 267, 415
PspGI CCWGG 2 cut(s) 267, 415
PspPI GGNCC 1 cut(s) 81
PstI CTGCAG 1 cut(s) 471
PsuI RGATCY 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 49
SaqAI TTAA 2 cut(s) 192, 410
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 3 cut(s) 43, 105, 453
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 269, 417
SetI ASST 9 cut(s) 35, 51, 150, 198, 270, 289, 333, 424, 453
SexAI ACCWGGT 1 cut(s) 267
SfcI CTRYAG 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 4 cut(s) 111, 125, 262, 407
StyD4I CCNGG 2 cut(s) 267, 415
TaqI TCGA 1 cut(s) 36
TasI AATT 4 cut(s) 111, 125, 262, 407
TfiI GAWTC 3 cut(s) 152, 178, 476
Tru1I TTAA 2 cut(s) 192, 410
Tru9I TTAA 2 cut(s) 192, 410
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 2 cut(s) 144, 297
XapI RAATTY 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.