Rh7DG349700

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013457
Physical Location & Seq
Reverse (-)
46378570 .. 46380164
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG349700.1

Sequence Viewer

Length: 954 bp
ATGTCGTCGTCATTGGTTCGTCCTCGTCCTCGTGTTATGGTCAATGGAATAAGAAGAATGAGAACCTTTCGTTTCTTCTGGTGCCGCCATTGCCAACATACTGTAAGAATTGCCTCTTCCAACCCATATGGATTTCAATGTCACTATTGCTCCAATGAGCTCAATCATGAGCTCGATGTATTGAGGCCTGCTGCCTCTATCAATAACTACCTTCAAGCCCTAGAACCTTCCCCGGCTGCCCGCTTACTTCAAAACCTAGCTCTCGTCCTCGATCCTTCCCCTCTGAGGCACCACGGACGACTTCGATGGCAAATCGAAACCAACAATGAGCCAGTTGATCATCCACGGTCTTGGATCACCCTCCAGTTCGAGAGACCGCCAAGACTTGTAGTTCCCGTACCACAAAATGCCACCCTCGACGAGGATCATACTAATAACGCTGCTACTTTCGAGGGAACAATAAACGAGGTTCCGAATGAGCGTCGGGGGCCATCACCGGCGCCCAGTTGGGCAATCGAAGGATTGCCTACGGTGAAAGTCACGGAAGAGGGGTTGGTGAAGGAACCCGGTTGCCCGGTTTGCAAGGAAGGGTTTGTGGTTGGTGGAGAAGTAAGAGAAATGCCATGCAAGCATGTGTATCATTCTGGTTGCATAGTCCCTTGGCTGAGCTTACACAATACTTGTCCAGTTTGTCGATATGAACTAAATAATGGGATCGATCAGTTTGGAGATCGTAATGAAAATTATTACGTAGAGGAGGAAGAAGAGGTGACGTCACGACATTGGTGGTGGAATCAGTTTCTTTCCGTCTGGCCATTTCGTGCATTAGTTCATTATTGGAGACAAAGTTACCTTGATAACCAAGCAAGGCGTCAAGATAGAACCCGGTGGTCCTCGATCTTGGATCGTTCTATCACTTCTATAGCTCAATTAATAAGTGGTGATGTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

317

Amino Acids

36.76

Weight (kDa)

6.89

Isoelectric Point (pI)

64.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 191 - 232 1.2e-12 Ring finger domain
zf-C3HC4_2 PF13923 191 - 231 5.2e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 191 - 218 3.6e-07 RING-like zinc finger
zf-C3HC4 PF00097 191 - 231 9.2e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68180
fragaria_vesca FvH4_5g29600 FvH4_5g29600
malus_domestica MD08G1228300.v1.1 MD15G1422200.v1.1
prunus_persica Prupe.1G567500_v2.0.a1 Prupe.1G567500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0222631
rosa_laevigata RLG00000002042
rosa_multiflora Rmu_sc0001498.1_g000010
rosa_roxburghii Rroxscaffold_3G00236580
rosa_rugosa Rorug07G0211600
rosa_samantha Rh7AG355200 Rh7BG343500 Rh7CG372500 Rh7DG349700
rosa_wichuraiana Rw7G029810 Rw7G030160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 776
AccB1I GGYRCC 3 cut(s) 81, 288, 499
AciI CCGC 3 cut(s) 85, 241, 377
AclWI GGATC 5 cut(s) 266, 362, 432, 722, 912
AcoI YGGCCR 1 cut(s) 812
AcyI GRCGYC 3 cut(s) 500, 773, 871
AfaI GTAC 1 cut(s) 399
AfiI CCNNNNNNNGG 2 cut(s) 285, 421
AgsI TTSAA 3 cut(s) 137, 215, 251
AluBI AGCT 5 cut(s) 160, 172, 260, 669, 926
AluI AGCT 5 cut(s) 160, 172, 260, 669, 926
Alw21I GWGCWC 2 cut(s) 162, 174
Alw26I GTCTC 2 cut(s) 367, 835
AlwI GGATC 5 cut(s) 266, 362, 432, 722, 912
AoxI GGCC 3 cut(s) 185, 488, 812
ApeKI GCWGC 3 cut(s) 191, 236, 440
AseI ATTAAT 1 cut(s) 932
AspLEI GCGC 1 cut(s) 502
AspS9I GGNCC 2 cut(s) 488, 891
AsuC2I CCSGG 4 cut(s) 233, 567, 575, 886
AsuHPI GGTGA 6 cut(s) 349, 486, 544, 568, 781, 953
AvaII GGWCC 1 cut(s) 891
BalI TGGCCA 1 cut(s) 814
BanI GGYRCC 3 cut(s) 81, 288, 499
BanII GRGCYC 2 cut(s) 162, 174
BauI CACGAG 1 cut(s) 30
Bbv12I GWGCWC 2 cut(s) 162, 174
BbvI GCAGC 3 cut(s) 178, 223, 427
BccI CCATC 2 cut(s) 300, 499
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 4 cut(s) 233, 567, 575, 886
BcoDI GTCTC 2 cut(s) 367, 835
BfaI CTAG 2 cut(s) 221, 257
BfmI CTRYAG 1 cut(s) 921
BfoI RGCGCY 1 cut(s) 503
BisI GCNGC 4 cut(s) 85, 192, 237, 441
BlpI GCTNAGC 1 cut(s) 665
BlsI GCNGC 4 cut(s) 86, 193, 238, 442
Bme1390I CCNGG 4 cut(s) 233, 567, 575, 886
Bme18I GGWCC 1 cut(s) 891
BmgT120I GGNCC 2 cut(s) 488, 891
BmiI GGNNCC 6 cut(s) 83, 290, 471, 489, 501, 564
BmrFI CCNGG 4 cut(s) 233, 567, 575, 886
BmrI ACTGGG 1 cut(s) 498
BmuI ACTGGG 1 cut(s) 498
BpmI CTGGAG 1 cut(s) 347
Bpu1102I GCTNAGC 1 cut(s) 665
BpuMI CCSGG 4 cut(s) 233, 567, 575, 886
Bsa29I ATCGAT 1 cut(s) 717
BsaAI YACGTR 1 cut(s) 751
BsaHI GRCGYC 3 cut(s) 500, 773, 871
BsaI GGTCTC 1 cut(s) 367
BsaJI CCNNGG 4 cut(s) 231, 292, 344, 659
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 832, 862
Bsc4I CCNNNNNNNGG 2 cut(s) 285, 421
Bse118I RCCGGY 1 cut(s) 496
Bse1I ACTGG 4 cut(s) 332, 364, 504, 686
Bse3DI GCAATG 1 cut(s) 88
BseCI ATCGAT 1 cut(s) 717
BseDI CCNNGG 4 cut(s) 231, 292, 344, 659
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 2 cut(s) 285, 421
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 275, 656
BseNI ACTGG 4 cut(s) 332, 364, 504, 686
BseRI GAGGAG 1 cut(s) 770
BseXI GCAGC 3 cut(s) 178, 223, 427
BshFI GGCC 3 cut(s) 187, 490, 814
BshNI GGYRCC 3 cut(s) 81, 288, 499
BshVI ATCGAT 1 cut(s) 717
BsiHKAI GWGCWC 2 cut(s) 162, 174
BsiSI CCGG 5 cut(s) 233, 497, 567, 575, 886
BslFI GGGAC 1 cut(s) 641
BslI CCNNNNNNNGG 2 cut(s) 285, 421
BsmAI GTCTC 2 cut(s) 367, 835
BsmFI GGGAC 1 cut(s) 641
BsnI GGCC 3 cut(s) 187, 490, 814
Bso31I GGTCTC 1 cut(s) 367
Bsp1286I GDGCHC 2 cut(s) 162, 174
Bsp143I GATC 9 cut(s) 271, 337, 354, 424, 714, 718, 730, 897, 904
Bsp1720I GCTNAGC 1 cut(s) 665
BspACI CCGC 3 cut(s) 85, 241, 377
BspANI GGCC 3 cut(s) 187, 490, 814
BspCNI CTCAG 2 cut(s) 276, 657
BspDI ATCGAT 1 cut(s) 717
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 6 cut(s) 83, 290, 471, 489, 501, 564
BspPI GGATC 5 cut(s) 266, 362, 432, 722, 912
BspT107I GGYRCC 3 cut(s) 81, 288, 499
BspTNI GGTCTC 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 496
BsrI ACTGG 4 cut(s) 332, 364, 504, 686
BssAI RCCGGY 1 cut(s) 496
BssECI CCNNGG 4 cut(s) 231, 292, 344, 659
BssMI GATC 9 cut(s) 271, 337, 354, 424, 714, 718, 730, 897, 904
BssNI GRCGYC 3 cut(s) 500, 773, 871
BssSI CACGAG 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 659
Bst2BI CACGAG 1 cut(s) 30
Bst4CI ACNGT 3 cut(s) 103, 348, 532
Bst6I CTCTTC 3 cut(s) 121, 540, 759
BstACI GRCGYC 3 cut(s) 500, 773, 871
BstBAI YACGTR 1 cut(s) 751
BstC8I GCNNGC 3 cut(s) 189, 241, 629
BstDEI CTNAG 2 cut(s) 284, 665
BstDSI CCRYGG 2 cut(s) 292, 344
BstENI CCTNNNNNAGG 1 cut(s) 419
BstF5I GGATG 1 cut(s) 340
BstH2I RGCGCY 1 cut(s) 503
BstHHI GCGC 1 cut(s) 502
BstKTI GATC 9 cut(s) 274, 340, 357, 427, 717, 721, 733, 900, 907
BstMAI GTCTC 2 cut(s) 367, 835
BstMBI GATC 9 cut(s) 271, 337, 354, 424, 714, 718, 730, 897, 904
BstMWI GCNNNNNNNGC 4 cut(s) 90, 487, 579, 628
BstNSI RCATGY 1 cut(s) 635
BstSCI CCNGG 4 cut(s) 231, 565, 573, 884
BstSFI CTRYAG 1 cut(s) 921
BstSNI TACGTA 1 cut(s) 751
BstV1I GCAGC 3 cut(s) 178, 223, 427
BstXI CCANNNNNNTGG 1 cut(s) 351
Bsu15I ATCGAT 1 cut(s) 717
BsuRI GGCC 3 cut(s) 187, 490, 814
BsuTUI ATCGAT 1 cut(s) 717
BtgI CCRYGG 2 cut(s) 292, 344
BtsCI GGATG 1 cut(s) 340
Cac8I GCNNGC 3 cut(s) 189, 241, 629
CciI TCATGA 1 cut(s) 166
CfoI GCGC 1 cut(s) 502
Cfr10I RCCGGY 1 cut(s) 496
Cfr13I GGNCC 2 cut(s) 488, 891
ClaI ATCGAT 1 cut(s) 717
CseI GACGC 2 cut(s) 470, 860
Csp6I GTAC 1 cut(s) 398
CviAII CATG 3 cut(s) 167, 624, 632
CviQI GTAC 1 cut(s) 398
DdeI CTNAG 2 cut(s) 284, 665
DinI GGCGCC 1 cut(s) 501
DpnI GATC 9 cut(s) 273, 339, 356, 426, 716, 720, 732, 899, 906
DpnII GATC 9 cut(s) 271, 337, 354, 424, 714, 718, 730, 897, 904
EaeI YGGCCR 1 cut(s) 812
Eam1104I CTCTTC 3 cut(s) 121, 540, 759
EarI CTCTTC 3 cut(s) 121, 540, 759
Ecl136II GAGCTC 2 cut(s) 160, 172
Eco105I TACGTA 1 cut(s) 751
Eco130I CCWWGG 1 cut(s) 659
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 162, 174
Eco31I GGTCTC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 891
Eco53kI GAGCTC 2 cut(s) 160, 172
EcoICRI GAGCTC 2 cut(s) 160, 172
EcoNI CCTNNNNNAGG 1 cut(s) 419
EcoT14I CCWWGG 1 cut(s) 659
EcoT38I GRGCYC 2 cut(s) 162, 174
EgeI GGCGCC 1 cut(s) 501
EheI GGCGCC 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 659
FaeI CATG 3 cut(s) 170, 627, 635
FaqI GGGAC 1 cut(s) 641
FatI CATG 3 cut(s) 166, 623, 631
FauI CCCGC 1 cut(s) 248
FauNDI CATATG 1 cut(s) 127
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 4 cut(s) 85, 192, 237, 441
FokI GGATG 1 cut(s) 327
FriOI GRGCYC 2 cut(s) 162, 174
Fsp4HI GCNGC 4 cut(s) 85, 192, 237, 441
FspBI CTAG 2 cut(s) 221, 257
GlaI GCGC 1 cut(s) 501
GluI GCNGC 4 cut(s) 85, 192, 237, 441
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 503
HaeIII GGCC 3 cut(s) 187, 490, 814
HapII CCGG 5 cut(s) 233, 497, 567, 575, 886
HgaI GACGC 2 cut(s) 470, 860
HhaI GCGC 1 cut(s) 502
Hin1I GRCGYC 3 cut(s) 500, 773, 871
Hin1II CATG 3 cut(s) 170, 627, 635
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HinfI GANTC 1 cut(s) 793
HpaII CCGG 5 cut(s) 233, 497, 567, 575, 886
HphI GGTGA 6 cut(s) 349, 486, 544, 568, 781, 953
Hpy188I TCNGA 2 cut(s) 285, 474
Hpy188III TCNNGA 4 cut(s) 167, 370, 777, 875
Hpy99I CGWCG 3 cut(s) 10, 422, 486
HpyAV CCTTC 6 cut(s) 221, 237, 285, 512, 553, 581
HpyCH4III ACNGT 3 cut(s) 103, 348, 532
HpyCH4IV ACGT 2 cut(s) 750, 773
HpyCH4V TGCA 4 cut(s) 582, 627, 651, 824
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 487, 579, 628
HpyF3I CTNAG 2 cut(s) 284, 665
HpySE526I ACGT 2 cut(s) 750, 773
Hsp92I GRCGYC 3 cut(s) 500, 773, 871
Hsp92II CATG 3 cut(s) 170, 627, 635
HspAI GCGC 1 cut(s) 500
KasI GGCGCC 1 cut(s) 499
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 9 cut(s) 271, 337, 354, 424, 714, 718, 730, 897, 904
LmnI GCTCC 1 cut(s) 155
Lsp1109I GCAGC 3 cut(s) 178, 223, 427
MaeI CTAG 2 cut(s) 221, 257
MaeII ACGT 2 cut(s) 750, 773
MaeIII GTNAC 5 cut(s) 140, 538, 769, 774, 848
MalI GATC 9 cut(s) 273, 339, 356, 426, 716, 720, 732, 899, 906
MboI GATC 9 cut(s) 271, 337, 354, 424, 714, 718, 730, 897, 904
MboII GAAGA 6 cut(s) 66, 67, 108, 557, 773, 776
MhlI GDGCHC 2 cut(s) 162, 174
MlsI TGGCCA 1 cut(s) 814
MluCI AATT 4 cut(s) 108, 742, 929, 949
MluNI TGGCCA 1 cut(s) 814
Mly113I GGCGCC 1 cut(s) 500
MmeI TCCRAC 1 cut(s) 144
Mox20I TGGCCA 1 cut(s) 814
MscI TGGCCA 1 cut(s) 814
MseI TTAA 2 cut(s) 932, 952
Msp20I TGGCCA 1 cut(s) 814
MspI CCGG 5 cut(s) 233, 497, 567, 575, 886
MspR9I CCNGG 4 cut(s) 233, 567, 575, 886
MwoI GCNNNNNNNGC 4 cut(s) 90, 487, 579, 628
NarI GGCGCC 1 cut(s) 500
NciI CCSGG 4 cut(s) 233, 567, 575, 886
NdeI CATATG 1 cut(s) 127
NdeII GATC 9 cut(s) 271, 337, 354, 424, 714, 718, 730, 897, 904
NlaIII CATG 3 cut(s) 170, 627, 635
NlaIV GGNNCC 6 cut(s) 83, 290, 471, 489, 501, 564
NmuCI GTSAC 4 cut(s) 140, 538, 769, 774
NspI RCATGY 1 cut(s) 635
PagI TCATGA 1 cut(s) 166
PceI AGGCCT 1 cut(s) 187
PfeI GAWTC 1 cut(s) 793
PkrI GCNGC 4 cut(s) 86, 193, 238, 442
PluTI GGCGCC 1 cut(s) 503
Ppu21I YACGTR 1 cut(s) 751
PshBI ATTAAT 1 cut(s) 932
Psp124BI GAGCTC 2 cut(s) 162, 174
PspN4I GGNNCC 6 cut(s) 83, 290, 471, 489, 501, 564
PspPI GGNCC 2 cut(s) 488, 891
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
SacI GAGCTC 2 cut(s) 162, 174
SaqAI TTAA 2 cut(s) 932, 952
SatI GCNGC 4 cut(s) 85, 192, 237, 441
Sau3AI GATC 9 cut(s) 271, 337, 354, 424, 714, 718, 730, 897, 904
Sau96I GGNCC 2 cut(s) 488, 891
ScrFI CCNGG 4 cut(s) 233, 567, 575, 886
SduI GDGCHC 2 cut(s) 162, 174
SfcI CTRYAG 1 cut(s) 921
SfoI GGCGCC 1 cut(s) 501
SgrAI CRCCGGYG 1 cut(s) 496
SinI GGWCC 1 cut(s) 891
SnaBI TACGTA 1 cut(s) 751
Sse9I AATT 4 cut(s) 108, 742, 929, 949
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 3 cut(s) 85, 241, 377
SspDI GGCGCC 1 cut(s) 499
SspMI CTAG 2 cut(s) 221, 257
SstI GAGCTC 2 cut(s) 162, 174
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 4 cut(s) 231, 565, 573, 884
StyI CCWWGG 1 cut(s) 659
TaaI ACNGT 3 cut(s) 103, 348, 532
TaiI ACGT 2 cut(s) 753, 776
TasI AATT 4 cut(s) 108, 742, 929, 949
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 1 cut(s) 793
Tru1I TTAA 2 cut(s) 932, 952
Tru9I TTAA 2 cut(s) 932, 952
TseFI GTSAC 4 cut(s) 140, 538, 769, 774
TseI GCWGC 3 cut(s) 191, 236, 440
Tsp45I GTSAC 4 cut(s) 140, 538, 769, 774
TspDTI ATGAA 3 cut(s) 714, 753, 821
TspGWI ACGGA 3 cut(s) 309, 557, 796
VpaK11BI GGWCC 1 cut(s) 891
VspI ATTAAT 1 cut(s) 932
XagI CCTNNNNNAGG 1 cut(s) 419
XceI RCATGY 1 cut(s) 635
XspI CTAG 2 cut(s) 221, 257
ZraI GACGTC 1 cut(s) 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.