Rw7G030160

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0013457
Physical Location & Seq
Reverse (-)
42562171 .. 42563240
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030160.1

Sequence Viewer

Length: 948 bp
ATGTCGTCGTCCTCGGTTCGTCCTCGTCCTCGTGTTATGGTCAATGGAATAAGAAGAATGAGAACCTTTCGTTTCTTCTGGTGCCGCCATTGCCAACATACTGTAAGAATTGCCTCTTCCAACCCATATGGATTTCAATGTCACTATTGCTCCAATGAGCTCAATCATGAGCTCGATGTATTGAGGCCTGCTGCCTCTATCAGTAACTACCTTCAAGCCCTAGAACCTTCCCCGGCTGCCCGCTTACTTCAAAACCTAGCTCTCGTCCTCGATCCTTCCCCTCTGAGGCACCACGGACGACTTCGATGGCAAATCGAAACCGACAATGAGCCAGTTGATCATCCACGGTCTTGGATCACCCTCCAGTTCGAGAGACCGCCAAGACTTGTAGTTCCCGTACCACAAAATGCCACCCTCGACGAGGATCATACTAATGACGCTGCTACTTTCGAGGGAACAATAAACGAGGTTCCGAATGAGCGTCGGGGGCCATCACCGGCGCCCAGTTGGGCAATCGAAGGATTGCCTACGGTGAAAGTCACGGAAGAGCGGTTGGTGAAGGAACCCGGTTGCCCGGTTTGCAAGGAAGGTTTTGTGGTTGGTGGAGAAGTAACGGAAATGCCATGCAAACATGTGTATCATTCTGATTGCATAGTCCCTTGGCTGAGCTTACACAATACTTGTCCAGTTTGCCGATATGAGCTAAACAATGCGATCGATCAGTTTGGAGATCGTAATGAAAATTATTACGCAGAGGAGGAAGAAGAGGTGACGTCACGACATTGGTTGTGGAATCAGTTTCTTTCCGTCTGGCCATTTCGTGCATTAGTTCAGTGGGGACAAAGTTACCTTGATCACCAGGCAAGGCGTCACGATAGAACCTGGTGGTCCTCTTGCATCGTTTCTATTACTTCTATAGCTCAATTAATAAGTGGTGATGTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

315

Amino Acids

36.33

Weight (kDa)

6.16

Isoelectric Point (pI)

63.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 191 - 232 5e-13 Ring finger domain
zf-C3HC4_2 PF13923 191 - 231 5.1e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 191 - 218 2e-07 RING-like zinc finger
zf-C3HC4 PF00097 191 - 231 4e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 191 - 229 3.2e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68180
fragaria_vesca FvH4_5g29600 FvH4_5g29600
malus_domestica MD08G1228300.v1.1 MD15G1422200.v1.1
prunus_persica Prupe.1G567500_v2.0.a1 Prupe.1G567500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0222631
rosa_laevigata RLG00000002042
rosa_multiflora Rmu_sc0001498.1_g000010
rosa_roxburghii Rroxscaffold_3G00236580
rosa_rugosa Rorug07G0211600
rosa_samantha Rh7AG355200 Rh7BG343500 Rh7CG372500 Rh7DG349700
rosa_wichuraiana Rw7G029810 Rw7G030160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 776
AccB1I GGYRCC 3 cut(s) 81, 288, 499
AccBSI CCGCTC 1 cut(s) 550
AciI CCGC 4 cut(s) 85, 241, 377, 550
AclWI GGATC 3 cut(s) 266, 362, 432
AcoI YGGCCR 1 cut(s) 812
AcyI GRCGYC 3 cut(s) 500, 773, 868
AfaI GTAC 1 cut(s) 399
AfiI CCNNNNNNNGG 2 cut(s) 285, 421
AflIII ACRYGT 1 cut(s) 631
AgsI TTSAA 3 cut(s) 137, 215, 251
AjnI CCWGG 2 cut(s) 858, 881
AluBI AGCT 6 cut(s) 160, 172, 260, 669, 703, 920
AluI AGCT 6 cut(s) 160, 172, 260, 669, 703, 920
Alw21I GWGCWC 2 cut(s) 162, 174
Alw26I GTCTC 1 cut(s) 367
AlwI GGATC 3 cut(s) 266, 362, 432
AoxI GGCC 3 cut(s) 185, 488, 812
ApeKI GCWGC 3 cut(s) 191, 236, 440
AseI ATTAAT 1 cut(s) 926
AspLEI GCGC 1 cut(s) 502
AspS9I GGNCC 2 cut(s) 488, 888
AsuC2I CCSGG 3 cut(s) 233, 567, 575
AsuHPI GGTGA 7 cut(s) 349, 486, 544, 568, 781, 848, 947
AvaII GGWCC 1 cut(s) 888
BaeI ACNNNNGTAYC 2 cut(s) 620, 653
BalI TGGCCA 1 cut(s) 814
BanI GGYRCC 3 cut(s) 81, 288, 499
BanII GRGCYC 2 cut(s) 162, 174
BauI CACGAG 1 cut(s) 30
Bbv12I GWGCWC 2 cut(s) 162, 174
BbvI GCAGC 3 cut(s) 178, 223, 427
BccI CCATC 2 cut(s) 300, 499
BciT130I CCWGG 2 cut(s) 860, 883
BclI TGATCA 2 cut(s) 337, 853
BcnI CCSGG 3 cut(s) 233, 567, 575
BcoDI GTCTC 1 cut(s) 367
BfaI CTAG 2 cut(s) 221, 257
BfmI CTRYAG 1 cut(s) 915
BfoI RGCGCY 1 cut(s) 503
BisI GCNGC 4 cut(s) 85, 192, 237, 441
BlpI GCTNAGC 1 cut(s) 665
BlsI GCNGC 4 cut(s) 86, 193, 238, 442
Bme1390I CCNGG 5 cut(s) 233, 567, 575, 860, 883
Bme18I GGWCC 1 cut(s) 888
BmgT120I GGNCC 2 cut(s) 488, 888
BmiI GGNNCC 6 cut(s) 83, 290, 471, 489, 501, 564
BmrFI CCNGG 5 cut(s) 233, 567, 575, 860, 883
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 1 cut(s) 906
BmuI ACTGGG 1 cut(s) 498
BpmI CTGGAG 1 cut(s) 347
Bpu1102I GCTNAGC 1 cut(s) 665
BpuMI CCSGG 3 cut(s) 233, 567, 575
Bsa29I ATCGAT 1 cut(s) 717
BsaHI GRCGYC 3 cut(s) 500, 773, 868
BsaI GGTCTC 1 cut(s) 367
BsaJI CCNNGG 5 cut(s) 12, 231, 292, 344, 659
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 2 cut(s) 285, 421
Bse118I RCCGGY 1 cut(s) 496
Bse1I ACTGG 4 cut(s) 332, 364, 504, 686
Bse3DI GCAATG 1 cut(s) 88
BseBI CCWGG 2 cut(s) 860, 883
BseCI ATCGAT 1 cut(s) 717
BseDI CCNNGG 5 cut(s) 12, 231, 292, 344, 659
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 2 cut(s) 285, 421
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 275, 656
BseNI ACTGG 4 cut(s) 332, 364, 504, 686
BseRI GAGGAG 1 cut(s) 770
BseXI GCAGC 3 cut(s) 178, 223, 427
Bsh1285I CGRYCG 1 cut(s) 717
BshFI GGCC 3 cut(s) 187, 490, 814
BshNI GGYRCC 3 cut(s) 81, 288, 499
BshVI ATCGAT 1 cut(s) 717
BsiEI CGRYCG 1 cut(s) 717
BsiHKAI GWGCWC 2 cut(s) 162, 174
BsiSI CCGG 4 cut(s) 233, 497, 567, 575
BslFI GGGAC 2 cut(s) 641, 852
BslI CCNNNNNNNGG 2 cut(s) 285, 421
BsmAI GTCTC 1 cut(s) 367
BsmFI GGGAC 2 cut(s) 641, 852
BsnI GGCC 3 cut(s) 187, 490, 814
Bso31I GGTCTC 1 cut(s) 367
Bsp1286I GDGCHC 2 cut(s) 162, 174
Bsp143I GATC 8 cut(s) 271, 337, 354, 424, 714, 718, 730, 853
Bsp1720I GCTNAGC 1 cut(s) 665
BspACI CCGC 4 cut(s) 85, 241, 377, 550
BspANI GGCC 3 cut(s) 187, 490, 814
BspCNI CTCAG 2 cut(s) 276, 657
BspDI ATCGAT 1 cut(s) 717
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 6 cut(s) 83, 290, 471, 489, 501, 564
BspPI GGATC 3 cut(s) 266, 362, 432
BspQI GCTCTTC 1 cut(s) 540
BspT107I GGYRCC 3 cut(s) 81, 288, 499
BspTNI GGTCTC 1 cut(s) 367
BsrBI CCGCTC 1 cut(s) 550
BsrDI GCAATG 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 496
BsrI ACTGG 4 cut(s) 332, 364, 504, 686
BssAI RCCGGY 1 cut(s) 496
BssECI CCNNGG 5 cut(s) 12, 231, 292, 344, 659
BssMI GATC 8 cut(s) 271, 337, 354, 424, 714, 718, 730, 853
BssNI GRCGYC 3 cut(s) 500, 773, 868
BssSI CACGAG 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 659
Bst2BI CACGAG 1 cut(s) 30
Bst2UI CCWGG 2 cut(s) 860, 883
Bst4CI ACNGT 3 cut(s) 103, 348, 532
Bst6I CTCTTC 3 cut(s) 121, 540, 759
BstACI GRCGYC 3 cut(s) 500, 773, 868
BstC8I GCNNGC 2 cut(s) 189, 241
BstDEI CTNAG 2 cut(s) 284, 665
BstDSI CCRYGG 2 cut(s) 292, 344
BstENI CCTNNNNNAGG 1 cut(s) 419
BstF5I GGATG 1 cut(s) 340
BstH2I RGCGCY 1 cut(s) 503
BstHHI GCGC 1 cut(s) 502
BstKTI GATC 8 cut(s) 274, 340, 357, 427, 717, 721, 733, 856
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 8 cut(s) 271, 337, 354, 424, 714, 718, 730, 853
BstMCI CGRYCG 1 cut(s) 717
BstMWI GCNNNNNNNGC 3 cut(s) 90, 487, 579
BstNI CCWGG 2 cut(s) 860, 883
BstNSI RCATGY 1 cut(s) 635
BstSCI CCNGG 5 cut(s) 231, 565, 573, 858, 881
BstSFI CTRYAG 1 cut(s) 915
BstV1I GCAGC 3 cut(s) 178, 223, 427
BstXI CCANNNNNNTGG 1 cut(s) 351
Bsu15I ATCGAT 1 cut(s) 717
BsuRI GGCC 3 cut(s) 187, 490, 814
BsuTUI ATCGAT 1 cut(s) 717
BtgI CCRYGG 2 cut(s) 292, 344
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 839
Cac8I GCNNGC 2 cut(s) 189, 241
CciI TCATGA 1 cut(s) 166
CfoI GCGC 1 cut(s) 502
Cfr10I RCCGGY 1 cut(s) 496
Cfr13I GGNCC 2 cut(s) 488, 888
ClaI ATCGAT 1 cut(s) 717
CseI GACGC 3 cut(s) 446, 470, 857
CsiI ACCWGGT 1 cut(s) 881
Csp6I GTAC 1 cut(s) 398
CviAII CATG 3 cut(s) 167, 624, 632
CviQI GTAC 1 cut(s) 398
DdeI CTNAG 2 cut(s) 284, 665
DinI GGCGCC 1 cut(s) 501
DpnI GATC 8 cut(s) 273, 339, 356, 426, 716, 720, 732, 855
DpnII GATC 8 cut(s) 271, 337, 354, 424, 714, 718, 730, 853
EaeI YGGCCR 1 cut(s) 812
Eam1104I CTCTTC 3 cut(s) 121, 540, 759
EarI CTCTTC 3 cut(s) 121, 540, 759
Ecl136II GAGCTC 2 cut(s) 160, 172
Eco130I CCWWGG 1 cut(s) 659
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 162, 174
Eco31I GGTCTC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 888
Eco53kI GAGCTC 2 cut(s) 160, 172
EcoICRI GAGCTC 2 cut(s) 160, 172
EcoNI CCTNNNNNAGG 1 cut(s) 419
EcoRII CCWGG 2 cut(s) 858, 881
EcoT14I CCWWGG 1 cut(s) 659
EcoT38I GRGCYC 2 cut(s) 162, 174
EgeI GGCGCC 1 cut(s) 501
EheI GGCGCC 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 659
FaeI CATG 3 cut(s) 170, 627, 635
FaqI GGGAC 2 cut(s) 641, 852
FatI CATG 3 cut(s) 166, 623, 631
FauI CCCGC 1 cut(s) 248
FauNDI CATATG 1 cut(s) 127
FbaI TGATCA 2 cut(s) 337, 853
Fnu4HI GCNGC 4 cut(s) 85, 192, 237, 441
FokI GGATG 1 cut(s) 327
FriOI GRGCYC 2 cut(s) 162, 174
Fsp4HI GCNGC 4 cut(s) 85, 192, 237, 441
FspBI CTAG 2 cut(s) 221, 257
GlaI GCGC 1 cut(s) 501
GluI GCNGC 4 cut(s) 85, 192, 237, 441
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 503
HaeIII GGCC 3 cut(s) 187, 490, 814
HapII CCGG 4 cut(s) 233, 497, 567, 575
HgaI GACGC 3 cut(s) 446, 470, 857
HhaI GCGC 1 cut(s) 502
Hin1I GRCGYC 3 cut(s) 500, 773, 868
Hin1II CATG 3 cut(s) 170, 627, 635
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HinfI GANTC 1 cut(s) 793
HpaII CCGG 4 cut(s) 233, 497, 567, 575
HphI GGTGA 7 cut(s) 349, 486, 544, 568, 781, 848, 947
Hpy188I TCNGA 3 cut(s) 285, 474, 646
Hpy188III TCNNGA 4 cut(s) 167, 370, 777, 872
Hpy99I CGWCG 3 cut(s) 10, 422, 486
HpyAV CCTTC 6 cut(s) 221, 237, 285, 512, 553, 581
HpyCH4III ACNGT 3 cut(s) 103, 348, 532
HpyCH4IV ACGT 1 cut(s) 773
HpyCH4V TGCA 5 cut(s) 582, 627, 651, 824, 897
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 487, 579
HpyF3I CTNAG 2 cut(s) 284, 665
HpySE526I ACGT 1 cut(s) 773
Hsp92I GRCGYC 3 cut(s) 500, 773, 868
Hsp92II CATG 3 cut(s) 170, 627, 635
HspAI GCGC 1 cut(s) 500
KasI GGCGCC 1 cut(s) 499
Ksp22I TGATCA 2 cut(s) 337, 853
Kzo9I GATC 8 cut(s) 271, 337, 354, 424, 714, 718, 730, 853
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 1 cut(s) 155
Lsp1109I GCAGC 3 cut(s) 178, 223, 427
LweI GCATC 1 cut(s) 906
MabI ACCWGGT 1 cut(s) 881
MaeI CTAG 2 cut(s) 221, 257
MaeII ACGT 1 cut(s) 773
MaeIII GTNAC 8 cut(s) 140, 203, 538, 610, 769, 774, 845, 869
MalI GATC 8 cut(s) 273, 339, 356, 426, 716, 720, 732, 855
MbiI CCGCTC 1 cut(s) 550
MboI GATC 8 cut(s) 271, 337, 354, 424, 714, 718, 730, 853
MboII GAAGA 6 cut(s) 66, 67, 108, 557, 773, 776
MhlI GDGCHC 2 cut(s) 162, 174
MlsI TGGCCA 1 cut(s) 814
MluCI AATT 4 cut(s) 108, 742, 923, 943
MluNI TGGCCA 1 cut(s) 814
Mly113I GGCGCC 1 cut(s) 500
MmeI TCCRAC 1 cut(s) 144
Mox20I TGGCCA 1 cut(s) 814
MscI TGGCCA 1 cut(s) 814
MseI TTAA 2 cut(s) 926, 946
MslI CAYNNNNRTG 1 cut(s) 432
Msp20I TGGCCA 1 cut(s) 814
MspI CCGG 4 cut(s) 233, 497, 567, 575
MspR9I CCNGG 5 cut(s) 233, 567, 575, 860, 883
MvaI CCWGG 2 cut(s) 860, 883
MwoI GCNNNNNNNGC 3 cut(s) 90, 487, 579
NarI GGCGCC 1 cut(s) 500
NciI CCSGG 3 cut(s) 233, 567, 575
NdeI CATATG 1 cut(s) 127
NdeII GATC 8 cut(s) 271, 337, 354, 424, 714, 718, 730, 853
NlaIII CATG 3 cut(s) 170, 627, 635
NlaIV GGNNCC 6 cut(s) 83, 290, 471, 489, 501, 564
NmuCI GTSAC 5 cut(s) 140, 538, 769, 774, 869
NspI RCATGY 1 cut(s) 635
PagI TCATGA 1 cut(s) 166
PceI AGGCCT 1 cut(s) 187
PciI ACATGT 1 cut(s) 631
PciSI GCTCTTC 1 cut(s) 540
PfeI GAWTC 1 cut(s) 793
PkrI GCNGC 4 cut(s) 86, 193, 238, 442
Ple19I CGATCG 1 cut(s) 717
PluTI GGCGCC 1 cut(s) 503
PscI ACATGT 1 cut(s) 631
PshBI ATTAAT 1 cut(s) 926
Psp124BI GAGCTC 2 cut(s) 162, 174
Psp6I CCWGG 2 cut(s) 858, 881
PspGI CCWGG 2 cut(s) 858, 881
PspN4I GGNNCC 6 cut(s) 83, 290, 471, 489, 501, 564
PspPI GGNCC 2 cut(s) 488, 888
PvuI CGATCG 1 cut(s) 717
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 432
SacI GAGCTC 2 cut(s) 162, 174
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 2 cut(s) 926, 946
SatI GCNGC 4 cut(s) 85, 192, 237, 441
Sau3AI GATC 8 cut(s) 271, 337, 354, 424, 714, 718, 730, 853
Sau96I GGNCC 2 cut(s) 488, 888
ScrFI CCNGG 5 cut(s) 233, 567, 575, 860, 883
SduI GDGCHC 2 cut(s) 162, 174
SexAI ACCWGGT 1 cut(s) 881
SfaNI GCATC 1 cut(s) 906
SfcI CTRYAG 1 cut(s) 915
SfoI GGCGCC 1 cut(s) 501
SgrAI CRCCGGYG 1 cut(s) 496
SinI GGWCC 1 cut(s) 888
SmiMI CAYNNNNRTG 1 cut(s) 432
Sse9I AATT 4 cut(s) 108, 742, 923, 943
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 4 cut(s) 85, 241, 377, 550
SspDI GGCGCC 1 cut(s) 499
SspMI CTAG 2 cut(s) 221, 257
SstI GAGCTC 2 cut(s) 162, 174
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 5 cut(s) 231, 565, 573, 858, 881
StyI CCWWGG 1 cut(s) 659
TaaI ACNGT 3 cut(s) 103, 348, 532
TaiI ACGT 1 cut(s) 776
TaqI TCGA 9 cut(s) 174, 270, 304, 315, 369, 417, 450, 516, 717
TasI AATT 4 cut(s) 108, 742, 923, 943
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 1 cut(s) 793
Tru1I TTAA 2 cut(s) 926, 946
Tru9I TTAA 2 cut(s) 926, 946
TscAI CASTG 1 cut(s) 839
TseFI GTSAC 5 cut(s) 140, 538, 769, 774, 869
TseI GCWGC 3 cut(s) 191, 236, 440
Tsp45I GTSAC 5 cut(s) 140, 538, 769, 774, 869
TspDTI ATGAA 1 cut(s) 753
TspGWI ACGGA 4 cut(s) 309, 557, 629, 796
TspRI CASTG 1 cut(s) 839
VpaK11BI GGWCC 1 cut(s) 888
VspI ATTAAT 1 cut(s) 926
XagI CCTNNNNNAGG 1 cut(s) 419
XceI RCATGY 1 cut(s) 635
XspI CTAG 2 cut(s) 221, 257
ZraI GACGTC 1 cut(s) 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.