RLG00000002042

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013457
Physical Location & Seq
Forward (+)
24661667 .. 24663109
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002042

Sequence Viewer

Length: 948 bp
ATGTCGTCGTCACTGGTTCGTCCTCGTCCTCGTGTTATGGTCAATGGAATAAGAAGAATGAGAACCTTTCGTTTCTTCTGGTGCCGCCATTGCCAACATACTGTAAGAATTGCCTCTTCCAACGCGTATGGATTTCAATGTCACTATTGCTCCAATGAGCTCAATCATGAGCTCGATGTATTGAGGCCTGCTGCCTCTATCAATAACCACCTTCAAGCCCTAGAACCTTCCCCGGCAGCCCGCTTACTTCAAAACCTAGCTCTCGTCCTCGATCCTTCCCCTCTGAGGCACCACGGACGACTTCGATGGCAAATCGAAACCGAAAATGAGCCAGTTGATCATCCACGGTCGTGGATCACCCTCCAGTTCGACAGACCACCAAGACTTGTAGTTCCCGTACCACAAAATGCCACCCTCGACGAGGATCATACTAATAACACTGCTACTTTCGAGGGAACAATAAACGAGGTTCTGAATGAGCATCGGGGGCCATCACCGGTGCCCAGTTGGGCAATCGAAGGATTGCCTACGGTGAAAGTCACGGAAGAGGGGTTGGTGAAGGAACCCGGTTGCCCGGTTTGCAAGGAAGGGTTTGTGGTTGGTGGAGAAGTAAGAGAAATGCCATGCAAGCATGTGTATCATTCTGATTGCATAGTCCCTTGGCTTAGCTTACACAATACTTGTCCAGTTTGCCGATATGAGCTAAATAATGGGATCGATCAGTTTGGAGATTGTAATGAAAATTATTACGCAGAGGAGGAAGAAGAGGTGACGTCACGACATTGGTGGTGGAATCAGTTTCTTTCCTTCTGGCCATTTCGTGCATTAGTTCATTGGGGACAAAGTTACCTTGATCACCAAGCAAGGCGTCAAGATAGAACCTGGTGCTCCTCTTGGATCGTTTCTATTACTTCTATAGCTCAATTAATAAGTGGTGATGTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

316

Amino Acids

36.39

Weight (kDa)

6.14

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 191 - 232 5.6e-13 Ring finger domain
zf-C3HC4_2 PF13923 191 - 231 1.4e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 191 - 218 8.9e-08 RING-like zinc finger
zf-C3HC4 PF00097 191 - 231 5.5e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68180
fragaria_vesca FvH4_5g29600 FvH4_5g29600
malus_domestica MD08G1228300.v1.1 MD15G1422200.v1.1
prunus_persica Prupe.1G567500_v2.0.a1 Prupe.1G567500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0222631
rosa_laevigata RLG00000002042
rosa_multiflora Rmu_sc0001498.1_g000010
rosa_roxburghii Rroxscaffold_3G00236580
rosa_rugosa Rorug07G0211600
rosa_samantha Rh7AG355200 Rh7BG343500 Rh7CG372500 Rh7DG349700
rosa_wichuraiana Rw7G029810 Rw7G030160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 776
AccB1I GGYRCC 3 cut(s) 81, 288, 499
AccII CGCG 1 cut(s) 125
AciI CCGC 2 cut(s) 85, 241
AclWI GGATC 5 cut(s) 266, 362, 432, 722, 905
AcoI YGGCCR 1 cut(s) 812
AcyI GRCGYC 2 cut(s) 773, 868
AfaI GTAC 1 cut(s) 399
AfiI CCNNNNNNNGG 2 cut(s) 285, 421
AflIII ACRYGT 1 cut(s) 123
AgeI ACCGGT 1 cut(s) 496
AgsI TTSAA 3 cut(s) 137, 215, 251
AjnI CCWGG 1 cut(s) 881
AleI CACNNNNGTG 1 cut(s) 349
AluBI AGCT 6 cut(s) 160, 172, 260, 669, 703, 920
AluI AGCT 6 cut(s) 160, 172, 260, 669, 703, 920
Alw21I GWGCWC 3 cut(s) 162, 174, 890
AlwI GGATC 5 cut(s) 266, 362, 432, 722, 905
AoxI GGCC 3 cut(s) 185, 488, 812
ApeKI GCWGC 2 cut(s) 191, 236
AseI ATTAAT 1 cut(s) 926
AsiGI ACCGGT 1 cut(s) 496
AspS9I GGNCC 1 cut(s) 488
AsuC2I CCSGG 3 cut(s) 233, 567, 575
AsuHPI GGTGA 7 cut(s) 349, 486, 544, 568, 781, 848, 947
BaeGI GKGCMC 1 cut(s) 504
BalI TGGCCA 1 cut(s) 814
BanI GGYRCC 3 cut(s) 81, 288, 499
BanII GRGCYC 2 cut(s) 162, 174
BauI CACGAG 1 cut(s) 30
Bbv12I GWGCWC 3 cut(s) 162, 174, 890
BbvI GCAGC 2 cut(s) 178, 248
BccI CCATC 2 cut(s) 300, 499
BciT130I CCWGG 1 cut(s) 883
BclI TGATCA 2 cut(s) 337, 853
BcnI CCSGG 3 cut(s) 233, 567, 575
BfaI CTAG 2 cut(s) 221, 257
BfmI CTRYAG 1 cut(s) 915
BisI GCNGC 3 cut(s) 85, 192, 237
BlpI GCTNAGC 1 cut(s) 665
BlsI GCNGC 3 cut(s) 86, 193, 238
Bme1390I CCNGG 4 cut(s) 233, 567, 575, 883
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 5 cut(s) 83, 290, 489, 501, 564
BmrFI CCNGG 4 cut(s) 233, 567, 575, 883
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 1 cut(s) 490
BmuI ACTGGG 1 cut(s) 498
BpmI CTGGAG 1 cut(s) 347
Bpu1102I GCTNAGC 1 cut(s) 665
BpuMI CCSGG 3 cut(s) 233, 567, 575
Bsa29I ATCGAT 1 cut(s) 717
BsaHI GRCGYC 2 cut(s) 773, 868
BsaJI CCNNGG 4 cut(s) 231, 292, 344, 659
BsaWI WCCGGW 1 cut(s) 496
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 2 cut(s) 285, 421
Bse118I RCCGGY 1 cut(s) 496
Bse1I ACTGG 5 cut(s) 18, 332, 364, 504, 686
Bse3DI GCAATG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 883
BseCI ATCGAT 1 cut(s) 717
BseDI CCNNGG 4 cut(s) 231, 292, 344, 659
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 2 cut(s) 285, 421
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 5 cut(s) 18, 332, 364, 504, 686
BseRI GAGGAG 2 cut(s) 770, 880
BseSI GKGCMC 1 cut(s) 504
BseXI GCAGC 2 cut(s) 178, 248
Bsh1236I CGCG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 350
BshFI GGCC 3 cut(s) 187, 490, 814
BshNI GGYRCC 3 cut(s) 81, 288, 499
BshTI ACCGGT 1 cut(s) 496
BshVI ATCGAT 1 cut(s) 717
BsiEI CGRYCG 1 cut(s) 350
BsiHKAI GWGCWC 3 cut(s) 162, 174, 890
BsiSI CCGG 4 cut(s) 233, 497, 567, 575
BslFI GGGAC 2 cut(s) 641, 852
BslI CCNNNNNNNGG 2 cut(s) 285, 421
BsmFI GGGAC 2 cut(s) 641, 852
BsnI GGCC 3 cut(s) 187, 490, 814
Bsp1286I GDGCHC 4 cut(s) 162, 174, 504, 890
Bsp143I GATC 8 cut(s) 271, 337, 354, 424, 714, 718, 853, 897
Bsp1720I GCTNAGC 1 cut(s) 665
BspACI CCGC 2 cut(s) 85, 241
BspANI GGCC 3 cut(s) 187, 490, 814
BspCNI CTCAG 1 cut(s) 276
BspDI ATCGAT 1 cut(s) 717
BspFNI CGCG 1 cut(s) 125
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 5 cut(s) 83, 290, 489, 501, 564
BspPI GGATC 5 cut(s) 266, 362, 432, 722, 905
BspT107I GGYRCC 3 cut(s) 81, 288, 499
BsrDI GCAATG 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 496
BsrI ACTGG 5 cut(s) 18, 332, 364, 504, 686
BssAI RCCGGY 1 cut(s) 496
BssECI CCNNGG 4 cut(s) 231, 292, 344, 659
BssMI GATC 8 cut(s) 271, 337, 354, 424, 714, 718, 853, 897
BssNI GRCGYC 2 cut(s) 773, 868
BssSI CACGAG 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 659
Bst2BI CACGAG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 883
Bst4CI ACNGT 3 cut(s) 103, 348, 532
Bst6I CTCTTC 3 cut(s) 121, 540, 759
BstACI GRCGYC 2 cut(s) 773, 868
BstC8I GCNNGC 3 cut(s) 189, 241, 629
BstDEI CTNAG 2 cut(s) 284, 665
BstDSI CCRYGG 2 cut(s) 292, 344
BstENI CCTNNNNNAGG 1 cut(s) 419
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 1 cut(s) 125
BstKTI GATC 8 cut(s) 274, 340, 357, 427, 717, 721, 856, 900
BstMBI GATC 8 cut(s) 271, 337, 354, 424, 714, 718, 853, 897
BstMCI CGRYCG 1 cut(s) 350
BstMWI GCNNNNNNNGC 4 cut(s) 90, 487, 579, 628
BstNI CCWGG 1 cut(s) 883
BstNSI RCATGY 1 cut(s) 635
BstSCI CCNGG 4 cut(s) 231, 565, 573, 881
BstSFI CTRYAG 1 cut(s) 915
BstSLI GKGCMC 1 cut(s) 504
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 2 cut(s) 178, 248
BstXI CCANNNNNNTGG 1 cut(s) 351
Bsu15I ATCGAT 1 cut(s) 717
BsuRI GGCC 3 cut(s) 187, 490, 814
BsuTUI ATCGAT 1 cut(s) 717
BtgI CCRYGG 2 cut(s) 292, 344
BtsCI GGATG 1 cut(s) 340
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 2 cut(s) 11, 438
Cac8I GCNNGC 3 cut(s) 189, 241, 629
CciI TCATGA 1 cut(s) 166
Cfr10I RCCGGY 1 cut(s) 496
Cfr13I GGNCC 1 cut(s) 488
ClaI ATCGAT 1 cut(s) 717
CseI GACGC 1 cut(s) 857
CsiI ACCWGGT 1 cut(s) 881
Csp6I GTAC 1 cut(s) 398
CspAI ACCGGT 1 cut(s) 496
CviAII CATG 3 cut(s) 167, 624, 632
CviQI GTAC 1 cut(s) 398
DdeI CTNAG 2 cut(s) 284, 665
DpnI GATC 8 cut(s) 273, 339, 356, 426, 716, 720, 855, 899
DpnII GATC 8 cut(s) 271, 337, 354, 424, 714, 718, 853, 897
EaeI YGGCCR 1 cut(s) 812
Eam1104I CTCTTC 3 cut(s) 121, 540, 759
EarI CTCTTC 3 cut(s) 121, 540, 759
Ecl136II GAGCTC 2 cut(s) 160, 172
Eco130I CCWWGG 1 cut(s) 659
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 162, 174
Eco53kI GAGCTC 2 cut(s) 160, 172
EcoICRI GAGCTC 2 cut(s) 160, 172
EcoNI CCTNNNNNAGG 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 881
EcoT14I CCWWGG 1 cut(s) 659
EcoT38I GRGCYC 2 cut(s) 162, 174
ErhI CCWWGG 1 cut(s) 659
FaeI CATG 3 cut(s) 170, 627, 635
FaqI GGGAC 2 cut(s) 641, 852
FatI CATG 3 cut(s) 166, 623, 631
FauI CCCGC 1 cut(s) 248
FbaI TGATCA 2 cut(s) 337, 853
Fnu4HI GCNGC 3 cut(s) 85, 192, 237
FokI GGATG 1 cut(s) 327
FriOI GRGCYC 2 cut(s) 162, 174
Fsp4HI GCNGC 3 cut(s) 85, 192, 237
FspBI CTAG 2 cut(s) 221, 257
GluI GCNGC 3 cut(s) 85, 192, 237
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 3 cut(s) 187, 490, 814
HapII CCGG 4 cut(s) 233, 497, 567, 575
HgaI GACGC 1 cut(s) 857
Hin1I GRCGYC 2 cut(s) 773, 868
Hin1II CATG 3 cut(s) 170, 627, 635
HinfI GANTC 1 cut(s) 793
HpaII CCGG 4 cut(s) 233, 497, 567, 575
HphI GGTGA 7 cut(s) 349, 486, 544, 568, 781, 848, 947
Hpy188I TCNGA 3 cut(s) 285, 474, 646
Hpy188III TCNNGA 3 cut(s) 167, 777, 872
Hpy99I CGWCG 2 cut(s) 10, 422
HpyAV CCTTC 7 cut(s) 221, 237, 285, 512, 553, 581, 817
HpyCH4III ACNGT 3 cut(s) 103, 348, 532
HpyCH4IV ACGT 1 cut(s) 773
HpyCH4V TGCA 4 cut(s) 582, 627, 651, 824
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 487, 579, 628
HpyF3I CTNAG 2 cut(s) 284, 665
HpySE526I ACGT 1 cut(s) 773
Hsp92I GRCGYC 2 cut(s) 773, 868
Hsp92II CATG 3 cut(s) 170, 627, 635
Ksp22I TGATCA 2 cut(s) 337, 853
Kzo9I GATC 8 cut(s) 271, 337, 354, 424, 714, 718, 853, 897
LmnI GCTCC 2 cut(s) 155, 893
Lsp1109I GCAGC 2 cut(s) 178, 248
LweI GCATC 1 cut(s) 490
MabI ACCWGGT 1 cut(s) 881
MaeI CTAG 2 cut(s) 221, 257
MaeII ACGT 1 cut(s) 773
MaeIII GTNAC 6 cut(s) 9, 140, 538, 769, 774, 845
MalI GATC 8 cut(s) 273, 339, 356, 426, 716, 720, 855, 899
MboI GATC 8 cut(s) 271, 337, 354, 424, 714, 718, 853, 897
MboII GAAGA 6 cut(s) 66, 67, 108, 557, 773, 776
MhlI GDGCHC 4 cut(s) 162, 174, 504, 890
MlsI TGGCCA 1 cut(s) 814
MluCI AATT 4 cut(s) 108, 742, 923, 943
MluI ACGCGT 1 cut(s) 123
MluNI TGGCCA 1 cut(s) 814
MmeI TCCRAC 1 cut(s) 144
Mox20I TGGCCA 1 cut(s) 814
MscI TGGCCA 1 cut(s) 814
MseI TTAA 2 cut(s) 926, 946
MslI CAYNNNNRTG 1 cut(s) 349
Msp20I TGGCCA 1 cut(s) 814
MspI CCGG 4 cut(s) 233, 497, 567, 575
MspR9I CCNGG 4 cut(s) 233, 567, 575, 883
MvaI CCWGG 1 cut(s) 883
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 4 cut(s) 90, 487, 579, 628
NciI CCSGG 3 cut(s) 233, 567, 575
NdeII GATC 8 cut(s) 271, 337, 354, 424, 714, 718, 853, 897
NlaIII CATG 3 cut(s) 170, 627, 635
NlaIV GGNNCC 5 cut(s) 83, 290, 489, 501, 564
NmuCI GTSAC 5 cut(s) 9, 140, 538, 769, 774
NspI RCATGY 1 cut(s) 635
OliI CACNNNNGTG 1 cut(s) 349
PagI TCATGA 1 cut(s) 166
PceI AGGCCT 1 cut(s) 187
PfeI GAWTC 1 cut(s) 793
PinAI ACCGGT 1 cut(s) 496
PkrI GCNGC 3 cut(s) 86, 193, 238
PshBI ATTAAT 1 cut(s) 926
Psp124BI GAGCTC 2 cut(s) 162, 174
Psp6I CCWGG 1 cut(s) 881
PspGI CCWGG 1 cut(s) 881
PspN4I GGNNCC 5 cut(s) 83, 290, 489, 501, 564
PspPI GGNCC 1 cut(s) 488
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 349
SacI GAGCTC 2 cut(s) 162, 174
SaqAI TTAA 2 cut(s) 926, 946
SatI GCNGC 3 cut(s) 85, 192, 237
Sau3AI GATC 8 cut(s) 271, 337, 354, 424, 714, 718, 853, 897
Sau96I GGNCC 1 cut(s) 488
ScrFI CCNGG 4 cut(s) 233, 567, 575, 883
SduI GDGCHC 4 cut(s) 162, 174, 504, 890
SexAI ACCWGGT 1 cut(s) 881
SfaNI GCATC 1 cut(s) 490
SfcI CTRYAG 1 cut(s) 915
SgrAI CRCCGGYG 1 cut(s) 496
SmiMI CAYNNNNRTG 1 cut(s) 349
Sse9I AATT 4 cut(s) 108, 742, 923, 943
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 2 cut(s) 85, 241
SspMI CTAG 2 cut(s) 221, 257
SstI GAGCTC 2 cut(s) 162, 174
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 4 cut(s) 231, 565, 573, 881
StyI CCWWGG 1 cut(s) 659
TaaI ACNGT 3 cut(s) 103, 348, 532
TaiI ACGT 1 cut(s) 776
TaqI TCGA 9 cut(s) 174, 270, 304, 315, 369, 417, 450, 516, 717
TasI AATT 4 cut(s) 108, 742, 923, 943
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 1 cut(s) 793
Tru1I TTAA 2 cut(s) 926, 946
Tru9I TTAA 2 cut(s) 926, 946
TscAI CASTG 2 cut(s) 18, 445
TseFI GTSAC 5 cut(s) 9, 140, 538, 769, 774
TseI GCWGC 2 cut(s) 191, 236
Tsp45I GTSAC 5 cut(s) 9, 140, 538, 769, 774
TspDTI ATGAA 2 cut(s) 753, 821
TspGWI ACGGA 2 cut(s) 309, 557
TspRI CASTG 2 cut(s) 18, 445
VspI ATTAAT 1 cut(s) 926
XagI CCTNNNNNAGG 1 cut(s) 419
XceI RCATGY 1 cut(s) 635
XspI CTAG 2 cut(s) 221, 257
ZraI GACGTC 1 cut(s) 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.