Rh7CG372500

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013457
Physical Location & Seq
Reverse (-)
46853756 .. 46855329
1574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG372500.1

Sequence Viewer

Length: 933 bp
ATGTCGTCGTCACTGGTTCGTCCTCGTCCTCGTATTATGGTCAATGGAATAAGAAGAATGAGAACCTTTCGTTTCTTCTGGTGCCGCCATTGCCAACATACTGTAAGAATTGCCTCTTCCAACCCATATGGATTTCAATGTCACTATTGCTCCAATGAGCTCGATGTATTGAGGCCTGCTGCCTCTATCAATAACCACCTTCAAGCCCTAGTACCTTCCCCGGCAGCCCGCTTACTTCAAAACCTAGCTCTCATCCTCGATCCTTCCCCTCTGAGGCACCACGGACGACTTCGATGGCAAATCGAAACCGACAATGAGCCAGTTGATCATCCACGGTCTTGGATCACCCTCCAGTTCGACAGACCGCCAAGACTTGTAGTTCCCGTACCACAAAATGCCACCCTCAACGAGGATCATACTAATAACGCTGCTACTTTCGAGGGAACAATAAACGAGGTTCCGAATGAGCGTCGCGGGCCATCACGGGCCCCCAGTTGGGCAATCGAAGGATTGCCAACAGTGAAAGTCACGGAAGAGGGGTTGGTGAAGGAACCCGGTTGCCCGGTTTGCAAGGAAGGGTTTGTGGTTGGTGGAGAAGTAAGAGAAATGCCATGCAAGCATGTGTATCATTCAGGTTGCATAGTCCCTTGGCTGAGTTTACACAATACTTGTCCAGTTTGCCGATATGAGCTAAATAATGGGATCGATCAGTTTGGAGATCGTAATGAAAATTATTACGCAGAGGAGGAAGAAGAGGTGACGTCACCACATTGGTGGTGGAATCAGTTTCTTTCCTTCTGGCCATTTCGTGCATTAGTTCATTGGAGACAAAGTTACCTTGATCACCAAGCAAGGCATCAAGATAGAACCTGGTGGTCCTCGATCTTAATTGGATCGTTCTATTACTTCTATAGCTCAATTAATAAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

310

Amino Acids

36.2

Weight (kDa)

7.66

Isoelectric Point (pI)

64.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 187 - 228 1.1e-12 Ring finger domain
zf-C3HC4_2 PF13923 187 - 227 5.1e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 187 - 214 3.5e-07 RING-like zinc finger
zf-C3HC4 PF00097 187 - 227 8.9e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68180
fragaria_vesca FvH4_5g29600 FvH4_5g29600
malus_domestica MD08G1228300.v1.1 MD15G1422200.v1.1
prunus_persica Prupe.1G567500_v2.0.a1 Prupe.1G567500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0222631
rosa_laevigata RLG00000002042
rosa_multiflora Rmu_sc0001498.1_g000010
rosa_roxburghii Rroxscaffold_3G00236580
rosa_rugosa Rorug07G0211600
rosa_samantha Rh7AG355200 Rh7BG343500 Rh7CG372500 Rh7DG349700
rosa_wichuraiana Rw7G029810 Rw7G030160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 764
AccB1I GGYRCC 2 cut(s) 81, 276
AccII CGCG 1 cut(s) 474
AciI CCGC 4 cut(s) 85, 229, 365, 474
AclWI GGATC 5 cut(s) 254, 350, 420, 710, 901
AcoI YGGCCR 1 cut(s) 800
AcyI GRCGYC 1 cut(s) 761
AfaI GTAC 2 cut(s) 213, 387
AfiI CCNNNNNNNGG 4 cut(s) 273, 409, 495, 496
AgsI TTSAA 3 cut(s) 137, 203, 239
AjnI CCWGG 1 cut(s) 869
AleI CACNNNNGTG 1 cut(s) 772
AluBI AGCT 4 cut(s) 160, 248, 691, 915
AluI AGCT 4 cut(s) 160, 248, 691, 915
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 820
AlwI GGATC 5 cut(s) 254, 350, 420, 710, 901
AoxI GGCC 4 cut(s) 173, 476, 486, 800
ApaI GGGCCC 1 cut(s) 490
ApeKI GCWGC 3 cut(s) 179, 224, 428
AseI ATTAAT 1 cut(s) 921
AspS9I GGNCC 4 cut(s) 476, 486, 487, 876
AsuC2I CCSGG 3 cut(s) 221, 555, 563
AsuHPI GGTGA 5 cut(s) 337, 556, 756, 769, 836
AvaII GGWCC 1 cut(s) 876
BaeGI GKGCMC 1 cut(s) 490
BalI TGGCCA 1 cut(s) 802
BanI GGYRCC 2 cut(s) 81, 276
BanII GRGCYC 2 cut(s) 162, 490
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 3 cut(s) 166, 236, 415
BccI CCATC 2 cut(s) 288, 487
BciT130I CCWGG 1 cut(s) 871
BclI TGATCA 2 cut(s) 325, 841
BcnI CCSGG 3 cut(s) 221, 555, 563
BcoDI GTCTC 1 cut(s) 820
BfaI CTAG 2 cut(s) 209, 245
BfmI CTRYAG 1 cut(s) 910
BisI GCNGC 4 cut(s) 85, 180, 225, 429
BlsI GCNGC 4 cut(s) 86, 181, 226, 430
Bme1390I CCNGG 4 cut(s) 221, 555, 563, 871
Bme18I GGWCC 1 cut(s) 876
BmgT120I GGNCC 4 cut(s) 476, 486, 487, 876
BmiI GGNNCC 6 cut(s) 83, 278, 459, 488, 489, 552
BmrFI CCNGG 4 cut(s) 221, 555, 563, 871
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 1 cut(s) 865
BmuI ACTGGG 1 cut(s) 486
BpmI CTGGAG 1 cut(s) 335
BpuMI CCSGG 3 cut(s) 221, 555, 563
Bsa29I ATCGAT 1 cut(s) 705
BsaHI GRCGYC 1 cut(s) 761
BsaJI CCNNGG 4 cut(s) 219, 280, 332, 647
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 817, 847
Bsc4I CCNNNNNNNGG 4 cut(s) 273, 409, 495, 496
Bse1I ACTGG 5 cut(s) 18, 320, 352, 492, 674
Bse3DI GCAATG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 871
BseCI ATCGAT 1 cut(s) 705
BseDI CCNNGG 4 cut(s) 219, 280, 332, 647
BseGI GGATG 2 cut(s) 252, 328
BseLI CCNNNNNNNGG 4 cut(s) 273, 409, 495, 496
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 263, 644
BseNI ACTGG 5 cut(s) 18, 320, 352, 492, 674
BseRI GAGGAG 1 cut(s) 758
BseSI GKGCMC 1 cut(s) 490
BseXI GCAGC 3 cut(s) 166, 236, 415
Bsh1236I CGCG 1 cut(s) 474
BshFI GGCC 4 cut(s) 175, 478, 488, 802
BshNI GGYRCC 2 cut(s) 81, 276
BshVI ATCGAT 1 cut(s) 705
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 3 cut(s) 221, 555, 563
BslFI GGGAC 1 cut(s) 629
BslI CCNNNNNNNGG 4 cut(s) 273, 409, 495, 496
BsmAI GTCTC 1 cut(s) 820
BsmFI GGGAC 1 cut(s) 629
BsnI GGCC 4 cut(s) 175, 478, 488, 802
Bsp120I GGGCCC 1 cut(s) 486
Bsp1286I GDGCHC 2 cut(s) 162, 490
BspACI CCGC 4 cut(s) 85, 229, 365, 474
BspANI GGCC 4 cut(s) 175, 478, 488, 802
BspCNI CTCAG 2 cut(s) 264, 645
BspDI ATCGAT 1 cut(s) 705
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 6 cut(s) 83, 278, 459, 488, 489, 552
BspPI GGATC 5 cut(s) 254, 350, 420, 710, 901
BspT107I GGYRCC 2 cut(s) 81, 276
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 5 cut(s) 18, 320, 352, 492, 674
BssECI CCNNGG 4 cut(s) 219, 280, 332, 647
BssNI GRCGYC 1 cut(s) 761
BssT1I CCWWGG 1 cut(s) 647
Bst2UI CCWGG 1 cut(s) 871
Bst4CI ACNGT 3 cut(s) 103, 336, 520
Bst6I CTCTTC 3 cut(s) 121, 528, 747
BstACI GRCGYC 1 cut(s) 761
BstC8I GCNNGC 4 cut(s) 177, 229, 476, 617
BstDEI CTNAG 2 cut(s) 272, 653
BstDSI CCRYGG 2 cut(s) 280, 332
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 2 cut(s) 252, 328
BstFNI CGCG 1 cut(s) 474
BstMAI GTCTC 1 cut(s) 820
BstMWI GCNNNNNNNGC 4 cut(s) 90, 475, 567, 616
BstNI CCWGG 1 cut(s) 871
BstNSI RCATGY 1 cut(s) 623
BstSCI CCNGG 4 cut(s) 219, 553, 561, 869
BstSFI CTRYAG 1 cut(s) 910
BstSLI GKGCMC 1 cut(s) 490
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 3 cut(s) 166, 236, 415
BstXI CCANNNNNNTGG 2 cut(s) 339, 774
Bsu15I ATCGAT 1 cut(s) 705
BsuRI GGCC 4 cut(s) 175, 478, 488, 802
BsuTUI ATCGAT 1 cut(s) 705
BtgI CCRYGG 2 cut(s) 280, 332
BtsCI GGATG 2 cut(s) 252, 328
BtsIMutI CAGTG 2 cut(s) 11, 525
Cac8I GCNNGC 4 cut(s) 177, 229, 476, 617
Cfr13I GGNCC 4 cut(s) 476, 486, 487, 876
ClaI ATCGAT 1 cut(s) 705
CseI GACGC 1 cut(s) 458
CsiI ACCWGGT 1 cut(s) 869
Csp6I GTAC 2 cut(s) 212, 386
CviAII CATG 2 cut(s) 612, 620
CviQI GTAC 2 cut(s) 212, 386
DdeI CTNAG 2 cut(s) 272, 653
EaeI YGGCCR 1 cut(s) 800
Eam1104I CTCTTC 3 cut(s) 121, 528, 747
EarI CTCTTC 3 cut(s) 121, 528, 747
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 647
Eco147I AGGCCT 1 cut(s) 175
Eco24I GRGCYC 2 cut(s) 162, 490
Eco47I GGWCC 1 cut(s) 876
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 487
EcoRII CCWGG 1 cut(s) 869
EcoT14I CCWWGG 1 cut(s) 647
EcoT38I GRGCYC 2 cut(s) 162, 490
ErhI CCWWGG 1 cut(s) 647
FaeI CATG 2 cut(s) 615, 623
FaqI GGGAC 1 cut(s) 629
FatI CATG 2 cut(s) 611, 619
FauI CCCGC 2 cut(s) 236, 467
FauNDI CATATG 1 cut(s) 127
FbaI TGATCA 2 cut(s) 325, 841
Fnu4HI GCNGC 4 cut(s) 85, 180, 225, 429
FokI GGATG 2 cut(s) 239, 315
FriOI GRGCYC 2 cut(s) 162, 490
Fsp4HI GCNGC 4 cut(s) 85, 180, 225, 429
FspBI CTAG 2 cut(s) 209, 245
GluI GCNGC 4 cut(s) 85, 180, 225, 429
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 4 cut(s) 175, 478, 488, 802
HapII CCGG 3 cut(s) 221, 555, 563
HgaI GACGC 1 cut(s) 458
Hin1I GRCGYC 1 cut(s) 761
Hin1II CATG 2 cut(s) 615, 623
HinfI GANTC 1 cut(s) 781
HpaII CCGG 3 cut(s) 221, 555, 563
HphI GGTGA 5 cut(s) 337, 556, 756, 769, 836
Hpy166II GTNNAC 1 cut(s) 659
Hpy188I TCNGA 2 cut(s) 273, 462
Hpy188III TCNNGA 1 cut(s) 860
Hpy8I GTNNAC 1 cut(s) 659
Hpy99I CGWCG 2 cut(s) 10, 474
HpyAV CCTTC 7 cut(s) 209, 225, 273, 500, 541, 569, 805
HpyCH4III ACNGT 3 cut(s) 103, 336, 520
HpyCH4IV ACGT 1 cut(s) 761
HpyCH4V TGCA 4 cut(s) 570, 615, 639, 812
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 475, 567, 616
HpyF3I CTNAG 2 cut(s) 272, 653
HpySE526I ACGT 1 cut(s) 761
Hsp92I GRCGYC 1 cut(s) 761
Hsp92II CATG 2 cut(s) 615, 623
Ksp22I TGATCA 2 cut(s) 325, 841
LmnI GCTCC 1 cut(s) 155
Lsp1109I GCAGC 3 cut(s) 166, 236, 415
LweI GCATC 1 cut(s) 865
MabI ACCWGGT 1 cut(s) 869
MaeI CTAG 2 cut(s) 209, 245
MaeII ACGT 1 cut(s) 761
MaeIII GTNAC 6 cut(s) 9, 140, 526, 757, 762, 833
MboII GAAGA 6 cut(s) 66, 67, 108, 545, 761, 764
MhlI GDGCHC 2 cut(s) 162, 490
MlsI TGGCCA 1 cut(s) 802
MluCI AATT 4 cut(s) 108, 730, 888, 918
MluNI TGGCCA 1 cut(s) 802
MmeI TCCRAC 1 cut(s) 144
Mox20I TGGCCA 1 cut(s) 802
MscI TGGCCA 1 cut(s) 802
MseI TTAA 2 cut(s) 887, 921
MslI CAYNNNNRTG 1 cut(s) 772
Msp20I TGGCCA 1 cut(s) 802
MspI CCGG 3 cut(s) 221, 555, 563
MspR9I CCNGG 4 cut(s) 221, 555, 563, 871
MvaI CCWGG 1 cut(s) 871
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 4 cut(s) 90, 475, 567, 616
NciI CCSGG 3 cut(s) 221, 555, 563
NdeI CATATG 1 cut(s) 127
NlaIII CATG 2 cut(s) 615, 623
NlaIV GGNNCC 6 cut(s) 83, 278, 459, 488, 489, 552
NmuCI GTSAC 5 cut(s) 9, 140, 526, 757, 762
NspI RCATGY 1 cut(s) 623
OliI CACNNNNGTG 1 cut(s) 772
PceI AGGCCT 1 cut(s) 175
PfeI GAWTC 1 cut(s) 781
PkrI GCNGC 4 cut(s) 86, 181, 226, 430
PshBI ATTAAT 1 cut(s) 921
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 869
PspGI CCWGG 1 cut(s) 869
PspN4I GGNNCC 6 cut(s) 83, 278, 459, 488, 489, 552
PspOMI GGGCCC 1 cut(s) 486
PspPI GGNCC 4 cut(s) 476, 486, 487, 876
RsaI GTAC 2 cut(s) 213, 387
RsaNI GTAC 2 cut(s) 212, 386
RseI CAYNNNNRTG 1 cut(s) 772
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 887, 921
SatI GCNGC 4 cut(s) 85, 180, 225, 429
Sau96I GGNCC 4 cut(s) 476, 486, 487, 876
ScrFI CCNGG 4 cut(s) 221, 555, 563, 871
SduI GDGCHC 2 cut(s) 162, 490
SexAI ACCWGGT 1 cut(s) 869
SfaNI GCATC 1 cut(s) 865
SfcI CTRYAG 1 cut(s) 910
SinI GGWCC 1 cut(s) 876
SmiMI CAYNNNNRTG 1 cut(s) 772
Sse9I AATT 4 cut(s) 108, 730, 888, 918
SseBI AGGCCT 1 cut(s) 175
SsiI CCGC 4 cut(s) 85, 229, 365, 474
SspMI CTAG 2 cut(s) 209, 245
SstI GAGCTC 1 cut(s) 162
StuI AGGCCT 1 cut(s) 175
StyD4I CCNGG 4 cut(s) 219, 553, 561, 869
StyI CCWWGG 1 cut(s) 647
TaaI ACNGT 3 cut(s) 103, 336, 520
TaiI ACGT 1 cut(s) 764
TaqI TCGA 9 cut(s) 162, 258, 292, 303, 357, 438, 504, 705, 881
TasI AATT 4 cut(s) 108, 730, 888, 918
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 1 cut(s) 781
Tru1I TTAA 2 cut(s) 887, 921
Tru9I TTAA 2 cut(s) 887, 921
TscAI CASTG 2 cut(s) 18, 525
TseFI GTSAC 5 cut(s) 9, 140, 526, 757, 762
TseI GCWGC 3 cut(s) 179, 224, 428
Tsp45I GTSAC 5 cut(s) 9, 140, 526, 757, 762
TspDTI ATGAA 2 cut(s) 741, 809
TspGWI ACGGA 2 cut(s) 297, 545
TspRI CASTG 2 cut(s) 18, 525
VpaK11BI GGWCC 1 cut(s) 876
VspI ATTAAT 1 cut(s) 921
XagI CCTNNNNNAGG 1 cut(s) 407
XceI RCATGY 1 cut(s) 623
XcmI CCANNNNNNNNNTGG 1 cut(s) 774
XspI CTAG 2 cut(s) 209, 245
ZraI GACGTC 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.